EsuBft100_22a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft100_22a-0001
Unique NameEsuBft100_22a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_441contigScaffold_441:325003..328225 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LRR4
ProteomeIdEsuBft100_22
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsIPR021420
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length128
Hectar predicted targeting categoryother localisation
Evalue6.59e-151
EggNOG OGs2AH3C@1|root,2S9WY@2759|Eukaryota
Ec32 ortholog descriptionProtein of unknown function DUF3067
Ec32 orthologEc-08_002130.1
Date last modified2016-06-14
Date creation2016-06-14
DescriptionDomain of unknown function (DUF3067)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft100_22aEsuBft100_22aEctocarpus subulatus male Bft15bgeneScaffold_441 325003..328225 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_22a-0001EsuBft100_22Ectocarpus subulatus male Bft15bpolypeptideScaffold_441 325064..327673 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_22a-0001-exonagat-exon-35378Ectocarpus subulatus male Bft15bexonScaffold_441 325003..325192 +
EsuBft100_22a-0001-exonagat-exon-35379Ectocarpus subulatus male Bft15bexonScaffold_441 326540..326709 +
EsuBft100_22a-0001-exonEsuBft100_22a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_441 327053..327199 +
EsuBft100_22a-0001-exonagat-exon-35377Ectocarpus subulatus male Bft15bexonScaffold_441 327451..328225 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_22a-0001-exonagat-five_prime_utr-61Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_441 325003..325063 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_22a-0001-cdsEsuBft100_22a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_441 325064..325192 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft100_22a-0001-exonagat-three_prime_utr-100Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_441 327674..328225 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft100_22a-0001 ID=EsuBft100_22a-0001|Name=EsuBft100_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1282bp|location=Sequence derived from alignment at Scaffold_441:325003..328225+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTGCTAAATCTCACCCAGGCAGGACTCGCCCTTCCCCTCAACTCCAAGTC
ACGAAAGCGCTATGTTACGTCAATCGGTAGCAGCTGTCGTAGCAGCCGTC
GCGCTCGTGGGAGCAAGAAACAGATCGGCAGAAGGATTTCGAAATGTGGG
TGTCGCGCGGAGCGGTCGTGCCCGACCAGATCGGTGTCAGAGCGTGGGTA
AGCTCTCGGCAAGTCCAATGGAGAAGTTCATGAGTGGTTTGGAGAAGATG
ATGACCGGTCCGCAGCTCGAAGGGAGCATGGACACCCCCCAGGAGCAAGA
GCAGCAGGAAGAACCCCAAGACATGAGTGCTTTCCGAGAGAGCCTGATCA
GGCAGAGCAGGAAAGACAGCTTGAAGAAGAAGGAAGAGTTCACGGGTTAC
GACATGTACGACTTGATCGTCGACAAGTTCGACGTACCATATGACGTTCA
AATCAACAAAACAGTATGGATGGGCAAACCTGTCTTGTGTTTCAACATCA
TGTGGAAGCATCTGGGACAGAGCAGCTTTCCACTCAGCGAGCAGGAATAC
TTGGAGCACCTGCAGGCACTCGCGGAGCTTCTGATGGAGTGGGATCGCGT
GGATCAGTTCAAGCGATCACTCGCCGAGACCAAGAAGCGACCGCAATCGT
ATTTCGGCTACGCCGTCGCGCTCCCACTCGATCTCGATCCTGACACGATG
GTAGACTACTTCGACGACTCTTACTTTTAACTTTGGCTGGGAGAGCACCG
CGACCCTTACGAACCACGGCTGTATTGATATATCTTGCTTGGTTGGGCGG
CGCACGAGGGCGTTTGACGGTATATACGATTGTGTGTTGCTGGGCATTAG
TGGCATATGCCGTCCCGAAGGTTTGCCGCAATGCTTGTTTGTTGTCGTGT
GGCGCATTCCTAACCGTTGGTTGGAGAGGGGTCGTTGTACCAACTCGCCG
AGAAAAGGAATTGTAGAAAATCGTTACTCATTTGGACGTTCGGGTGGCGA
ACCAGAAGGTGCGGGGCCACACCTTCAGGCTTGAAACCGTATGTATATGC
CGGGAGAAAGGGTAATTTTGCGGAAGGCACGACGTGTGACTAGAGAAGCA
GAGATGCAGTGAGGTTCATATCAACGTAGGAAAGGGAGTACAGGGTTTTT
TAATTGACTTCTCGTGCATCACTCGAAGAATTCGCTTGCGTGAGTTACGT
ACATATTACAAGACTGTGTGGTGAACGCGAGACCCGCACACCATACACAC
ACCTCTTGCGGCCGTGAAATGCCCTCTTCTCG
back to top

protein sequence of EsuBft100_22a-0001

>EsuBft100_22 ID=EsuBft100_22|Name=EsuBft100_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=222bp
MLRQSVAAVVAAVALVGARNRSAEGFRNVGVARSGRARPDRCQSVGKLSA
SPMEKFMSGLEKMMTGPQLEGSMDTPQEQEQQEEPQDMSAFRESLIRQSR
KDSLKKKEEFTGYDMYDLIVDKFDVPYDVQINKTVWMGKPVLCFNIMWKH
LGQSSFPLSEQEYLEHLQALAELLMEWDRVDQFKRSLAETKKRPQSYFGY
AVALPLDLDPDTMVDYFDDSYF
back to top

mRNA from alignment at Scaffold_441:325003..328225+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft100_22a-0001 ID=EsuBft100_22a-0001|Name=EsuBft100_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3223bp|location=Sequence derived from alignment at Scaffold_441:325003..328225+ (Ectocarpus subulatus male Bft15b)
CTGCTAAATCTCACCCAGGCAGGACTCGCCCTTCCCCTCAACTCCAAGTC
ACGAAAGCGCTATGTTACGTCAATCGGTAGCAGCTGTCGTAGCAGCCGTC
GCGCTCGTGGGAGCAAGAAACAGATCGGCAGAAGGATTTCGAAATGTGGG
TGTCGCGCGGAGCGGTCGTGCCCGACCAGATCGGTGTCAGGTGAGGCCGT
ACGCGAGAGGGACAGGCACGCTCGTCGTCAGCACCGGTACGCATCGGAAC
GGGCAGTAGTAATAGGCTTTTGATGACTGCTGATGATGATAGAAGCGCCA
GAATACACCGCCGTGGTGACGCTACGCGCAAGCAAGCCGTCCCAAGTTGA
ACCGGCCAGTAACCTGCAAGGACCAGCGGCATTCCAGTCATCATGTAGTC
TATCGTCCGTAGATGTAAGCACAAAGACCACGCTACCACGCTGTACTCTT
TTGAGACATGTTTTGTTGGTGTTCAACACCGCTAGGTAAGGCGAATATTT
CCTTCCCTGCTAACATTGCCAGACGACACCACACGGGACGGGTGTGGGCG
TCCGGGTCAGGGGCTTCGCCAAACGCGGCGCGATCATTCAGGCCGTGTTC
CCCGCTCGTATTTCGAAGTGATTCGTACTTATCAGGCGGTGTCGGGGCAT
TGGCTTGTTGTATGCATAGGTCGATCATACATGTACATATTGCGAATGCC
ACCAGCAAAAAAATTGCCCCTAGCGTTTTGCCAGCAGCTGGAATGTCTGC
TGGGACGGTTGAAGCCGAAACATGCGGGGCATCATGTGGCACGGACGGTG
ACCGACCACCGGCGACGACAGTGTGCTTCCCTGGTATCCGTTGTGTACAC
AGTAAGAGTACGTGGAATAGAGAACGGTGCACGCGAAAGAGATGGCCACG
CGGCCCCAAGACGTCCGGGGTCAAACGCGAATATCTCTGCTTACTTTGAG
AAAGTCCACGAGCCGCGGTGTAGGCATAATGTATCTCCGAATGTTCTGCC
CAGGAGGTTGCATCAGTGCTGTTCATGTTGCGTCCAAGTCCTAATCGCGA
TCCAGTGAGACTACCAGCAGTACTGCTGGTGGGCAATCAGTGAGAGTCTT
AGATCGCTCGGGAACTAGAGTTACTAAAAGCACCCATTGTTGTGGAGACA
AACACTCCCACTTGTTGGATATGAGTGGATGGAGTCACAACTGAGCGTCA
CCCGTGCTTGCGTGCGGGATTTTTGTCGACGAACGCTGACACCATCCTTC
CTCGCAGGGGAGAAGCGGCCGAATTATCTTCACCTTTTGATATGCATACG
GAGAATTTGCCCTGGGACACGTGCACAGTACTTGAACCACATTGCTTGCA
TAGCGCACGGCCCGACTTTTCGTTTCCTCGACGCGTGCAGGACACCCTCC
TCTCGTCCTTGCTATGTAGGAACCTGTTTCGAAGTACTCTGCCAAAATGC
TGCTGTGTAGCATTACACCTCCACACAATATTGTTTCGACCAGTGCTGTC
AGCATTCCGTCATGTTCCGCTACTTGCACCTGCTCAGAGCGTGGGTAAGC
TCTCGGCAAGTCCAATGGAGAAGTTCATGAGTGGTTTGGAGAAGATGATG
ACCGGTCCGCAGCTCGAAGGGAGCATGGACACCCCCCAGGAGCAAGAGCA
GCAGGAAGAACCCCAAGACATGAGTGCTTTCCGAGAGAGCCTGATCAGGC
AGAGCAGGTTATCGCGCCCGTTGCAGTAGTAGTTGTGACTTTGGTGCAGC
AGCGATGCGCTTGATGTGGTGGAGTTTGTCTTGTGCATCTCACATCGACA
CCTTTGATGGTGGCCAGTCAAGAGGGGGCAGTTGATCGCCGAAAATCCGC
TCAAGGTGAAACAAGTTTTTTTTTTTATGTTCGCTGTTGATGAGACAAAC
AAAGAGCAACGGTGTCCAGATCTTCGTTGTTTCGAGGTATTGTTCCAGTG
ATATGCACACGTTTTACTTCGCTGTGAATGCTGCTACGCAGACGTGCCTT
TAACCTGACCTTCCTCCTCCGCGGTCGTGTTTCGCCACGCCTTGTTGCAG
GAAAGACAGCTTGAAGAAGAAGGAAGAGTTCACGGGTTACGACATGTACG
ACTTGATCGTCGACAAGTTCGACGTACCATATGACGTTCAAATCAACAAA
ACAGTATGGATGGGCAAACCTGTCTTGTGTTTCAACATCATGTGGAAGTG
AGTGGCGTCTGCCCTTGGGGTTGTAGTACGGTCGGGGTCAGGAGTGTGTA
TCTATGTTGCACATTCCCACGTGAGAGGTAGAACAACCTTGTCCTGAATT
CGCAACAAGCCTCGCCGGTGTCGCCAAAGCTGTCGCCACAAATTCGTCAT
TGGTTAACGGTAGAGCGAGCGTCCTTGAGGCGTGAACATTGAAGACGCGG
CTGTGTTCCCAAGACTCAACCCGGCACGGCTGCATTGTTCTCATCCAGGC
ATCTGGGACAGAGCAGCTTTCCACTCAGCGAGCAGGAATACTTGGAGCAC
CTGCAGGCACTCGCGGAGCTTCTGATGGAGTGGGATCGCGTGGATCAGTT
CAAGCGATCACTCGCCGAGACCAAGAAGCGACCGCAATCGTATTTCGGCT
ACGCCGTCGCGCTCCCACTCGATCTCGATCCTGACACGATGGTAGACTAC
TTCGACGACTCTTACTTTTAACTTTGGCTGGGAGAGCACCGCGACCCTTA
CGAACCACGGCTGTATTGATATATCTTGCTTGGTTGGGCGGCGCACGAGG
GCGTTTGACGGTATATACGATTGTGTGTTGCTGGGCATTAGTGGCATATG
CCGTCCCGAAGGTTTGCCGCAATGCTTGTTTGTTGTCGTGTGGCGCATTC
CTAACCGTTGGTTGGAGAGGGGTCGTTGTACCAACTCGCCGAGAAAAGGA
ATTGTAGAAAATCGTTACTCATTTGGACGTTCGGGTGGCGAACCAGAAGG
TGCGGGGCCACACCTTCAGGCTTGAAACCGTATGTATATGCCGGGAGAAA
GGGTAATTTTGCGGAAGGCACGACGTGTGACTAGAGAAGCAGAGATGCAG
TGAGGTTCATATCAACGTAGGAAAGGGAGTACAGGGTTTTTTAATTGACT
TCTCGTGCATCACTCGAAGAATTCGCTTGCGTGAGTTACGTACATATTAC
AAGACTGTGTGGTGAACGCGAGACCCGCACACCATACACACACCTCTTGC
GGCCGTGAAATGCCCTCTTCTCG
back to top

Coding sequence (CDS) from alignment at Scaffold_441:325003..328225+

>EsuBft100_22a-0001 ID=EsuBft100_22a-0001|Name=EsuBft100_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=669bp|location=Sequence derived from alignment at Scaffold_441:325003..328225+ (Ectocarpus subulatus male Bft15b)
ATGTTACGTCAATCGGTAGCAGCTGTCGTAGCAGCCGTCGCGCTCGTGGG
AGCAAGAAACAGATCGGCAGAAGGATTTCGAAATGTGGGTGTCGCGCGGA
GCGGTCGTGCCCGACCAGATCGGTGTCAGAGCGTGGGTAAGCTCTCGGCA
AGTCCAATGGAGAAGTTCATGAGTGGTTTGGAGAAGATGATGACCGGTCC
GCAGCTCGAAGGGAGCATGGACACCCCCCAGGAGCAAGAGCAGCAGGAAG
AACCCCAAGACATGAGTGCTTTCCGAGAGAGCCTGATCAGGCAGAGCAGG
AAAGACAGCTTGAAGAAGAAGGAAGAGTTCACGGGTTACGACATGTACGA
CTTGATCGTCGACAAGTTCGACGTACCATATGACGTTCAAATCAACAAAA
CAGTATGGATGGGCAAACCTGTCTTGTGTTTCAACATCATGTGGAAGCAT
CTGGGACAGAGCAGCTTTCCACTCAGCGAGCAGGAATACTTGGAGCACCT
GCAGGCACTCGCGGAGCTTCTGATGGAGTGGGATCGCGTGGATCAGTTCA
AGCGATCACTCGCCGAGACCAAGAAGCGACCGCAATCGTATTTCGGCTAC
GCCGTCGCGCTCCCACTCGATCTCGATCCTGACACGATGGTAGACTACTT
CGACGACTCTTACTTTTAA
back to top