Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LRR4 |
| ProteomeId | EsuBft100_22 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | IPR021420 |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 4 |
| Max annot lvl | 2759|Eukaryota |
| Length | 128 |
| Hectar predicted targeting category | other localisation |
| Evalue | 6.59e-151 |
| EggNOG OGs | 2AH3C@1|root,2S9WY@2759|Eukaryota |
| Ec32 ortholog description | Protein of unknown function DUF3067 |
| Ec32 ortholog | Ec-08_002130.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Domain of unknown function (DUF3067) |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft100_22a-0001 ID=EsuBft100_22a-0001|Name=EsuBft100_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1282bp|location=Sequence derived from alignment at Scaffold_441:325003..328225+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CTGCTAAATCTCACCCAGGCAGGACTCGCCCTTCCCCTCAACTCCAAGTC
ACGAAAGCGCTATGTTACGTCAATCGGTAGCAGCTGTCGTAGCAGCCGTC
GCGCTCGTGGGAGCAAGAAACAGATCGGCAGAAGGATTTCGAAATGTGGG
TGTCGCGCGGAGCGGTCGTGCCCGACCAGATCGGTGTCAGAGCGTGGGTA
AGCTCTCGGCAAGTCCAATGGAGAAGTTCATGAGTGGTTTGGAGAAGATG
ATGACCGGTCCGCAGCTCGAAGGGAGCATGGACACCCCCCAGGAGCAAGA
GCAGCAGGAAGAACCCCAAGACATGAGTGCTTTCCGAGAGAGCCTGATCA
GGCAGAGCAGGAAAGACAGCTTGAAGAAGAAGGAAGAGTTCACGGGTTAC
GACATGTACGACTTGATCGTCGACAAGTTCGACGTACCATATGACGTTCA
AATCAACAAAACAGTATGGATGGGCAAACCTGTCTTGTGTTTCAACATCA
TGTGGAAGCATCTGGGACAGAGCAGCTTTCCACTCAGCGAGCAGGAATAC
TTGGAGCACCTGCAGGCACTCGCGGAGCTTCTGATGGAGTGGGATCGCGT
GGATCAGTTCAAGCGATCACTCGCCGAGACCAAGAAGCGACCGCAATCGT
ATTTCGGCTACGCCGTCGCGCTCCCACTCGATCTCGATCCTGACACGATG
GTAGACTACTTCGACGACTCTTACTTTTAACTTTGGCTGGGAGAGCACCG
CGACCCTTACGAACCACGGCTGTATTGATATATCTTGCTTGGTTGGGCGG
CGCACGAGGGCGTTTGACGGTATATACGATTGTGTGTTGCTGGGCATTAG
TGGCATATGCCGTCCCGAAGGTTTGCCGCAATGCTTGTTTGTTGTCGTGT
GGCGCATTCCTAACCGTTGGTTGGAGAGGGGTCGTTGTACCAACTCGCCG
AGAAAAGGAATTGTAGAAAATCGTTACTCATTTGGACGTTCGGGTGGCGA
ACCAGAAGGTGCGGGGCCACACCTTCAGGCTTGAAACCGTATGTATATGC
CGGGAGAAAGGGTAATTTTGCGGAAGGCACGACGTGTGACTAGAGAAGCA
GAGATGCAGTGAGGTTCATATCAACGTAGGAAAGGGAGTACAGGGTTTTT
TAATTGACTTCTCGTGCATCACTCGAAGAATTCGCTTGCGTGAGTTACGT
ACATATTACAAGACTGTGTGGTGAACGCGAGACCCGCACACCATACACAC
ACCTCTTGCGGCCGTGAAATGCCCTCTTCTCG back to topprotein sequence of EsuBft100_22a-0001 >EsuBft100_22 ID=EsuBft100_22|Name=EsuBft100_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=222bp
MLRQSVAAVVAAVALVGARNRSAEGFRNVGVARSGRARPDRCQSVGKLSA
SPMEKFMSGLEKMMTGPQLEGSMDTPQEQEQQEEPQDMSAFRESLIRQSR
KDSLKKKEEFTGYDMYDLIVDKFDVPYDVQINKTVWMGKPVLCFNIMWKH
LGQSSFPLSEQEYLEHLQALAELLMEWDRVDQFKRSLAETKKRPQSYFGY
AVALPLDLDPDTMVDYFDDSYF back to topmRNA from alignment at Scaffold_441:325003..328225+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft100_22a-0001 ID=EsuBft100_22a-0001|Name=EsuBft100_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3223bp|location=Sequence derived from alignment at Scaffold_441:325003..328225+ (Ectocarpus subulatus male Bft15b)
CTGCTAAATCTCACCCAGGCAGGACTCGCCCTTCCCCTCAACTCCAAGTC
ACGAAAGCGCTATGTTACGTCAATCGGTAGCAGCTGTCGTAGCAGCCGTC
GCGCTCGTGGGAGCAAGAAACAGATCGGCAGAAGGATTTCGAAATGTGGG
TGTCGCGCGGAGCGGTCGTGCCCGACCAGATCGGTGTCAGGTGAGGCCGT
ACGCGAGAGGGACAGGCACGCTCGTCGTCAGCACCGGTACGCATCGGAAC
GGGCAGTAGTAATAGGCTTTTGATGACTGCTGATGATGATAGAAGCGCCA
GAATACACCGCCGTGGTGACGCTACGCGCAAGCAAGCCGTCCCAAGTTGA
ACCGGCCAGTAACCTGCAAGGACCAGCGGCATTCCAGTCATCATGTAGTC
TATCGTCCGTAGATGTAAGCACAAAGACCACGCTACCACGCTGTACTCTT
TTGAGACATGTTTTGTTGGTGTTCAACACCGCTAGGTAAGGCGAATATTT
CCTTCCCTGCTAACATTGCCAGACGACACCACACGGGACGGGTGTGGGCG
TCCGGGTCAGGGGCTTCGCCAAACGCGGCGCGATCATTCAGGCCGTGTTC
CCCGCTCGTATTTCGAAGTGATTCGTACTTATCAGGCGGTGTCGGGGCAT
TGGCTTGTTGTATGCATAGGTCGATCATACATGTACATATTGCGAATGCC
ACCAGCAAAAAAATTGCCCCTAGCGTTTTGCCAGCAGCTGGAATGTCTGC
TGGGACGGTTGAAGCCGAAACATGCGGGGCATCATGTGGCACGGACGGTG
ACCGACCACCGGCGACGACAGTGTGCTTCCCTGGTATCCGTTGTGTACAC
AGTAAGAGTACGTGGAATAGAGAACGGTGCACGCGAAAGAGATGGCCACG
CGGCCCCAAGACGTCCGGGGTCAAACGCGAATATCTCTGCTTACTTTGAG
AAAGTCCACGAGCCGCGGTGTAGGCATAATGTATCTCCGAATGTTCTGCC
CAGGAGGTTGCATCAGTGCTGTTCATGTTGCGTCCAAGTCCTAATCGCGA
TCCAGTGAGACTACCAGCAGTACTGCTGGTGGGCAATCAGTGAGAGTCTT
AGATCGCTCGGGAACTAGAGTTACTAAAAGCACCCATTGTTGTGGAGACA
AACACTCCCACTTGTTGGATATGAGTGGATGGAGTCACAACTGAGCGTCA
CCCGTGCTTGCGTGCGGGATTTTTGTCGACGAACGCTGACACCATCCTTC
CTCGCAGGGGAGAAGCGGCCGAATTATCTTCACCTTTTGATATGCATACG
GAGAATTTGCCCTGGGACACGTGCACAGTACTTGAACCACATTGCTTGCA
TAGCGCACGGCCCGACTTTTCGTTTCCTCGACGCGTGCAGGACACCCTCC
TCTCGTCCTTGCTATGTAGGAACCTGTTTCGAAGTACTCTGCCAAAATGC
TGCTGTGTAGCATTACACCTCCACACAATATTGTTTCGACCAGTGCTGTC
AGCATTCCGTCATGTTCCGCTACTTGCACCTGCTCAGAGCGTGGGTAAGC
TCTCGGCAAGTCCAATGGAGAAGTTCATGAGTGGTTTGGAGAAGATGATG
ACCGGTCCGCAGCTCGAAGGGAGCATGGACACCCCCCAGGAGCAAGAGCA
GCAGGAAGAACCCCAAGACATGAGTGCTTTCCGAGAGAGCCTGATCAGGC
AGAGCAGGTTATCGCGCCCGTTGCAGTAGTAGTTGTGACTTTGGTGCAGC
AGCGATGCGCTTGATGTGGTGGAGTTTGTCTTGTGCATCTCACATCGACA
CCTTTGATGGTGGCCAGTCAAGAGGGGGCAGTTGATCGCCGAAAATCCGC
TCAAGGTGAAACAAGTTTTTTTTTTTATGTTCGCTGTTGATGAGACAAAC
AAAGAGCAACGGTGTCCAGATCTTCGTTGTTTCGAGGTATTGTTCCAGTG
ATATGCACACGTTTTACTTCGCTGTGAATGCTGCTACGCAGACGTGCCTT
TAACCTGACCTTCCTCCTCCGCGGTCGTGTTTCGCCACGCCTTGTTGCAG
GAAAGACAGCTTGAAGAAGAAGGAAGAGTTCACGGGTTACGACATGTACG
ACTTGATCGTCGACAAGTTCGACGTACCATATGACGTTCAAATCAACAAA
ACAGTATGGATGGGCAAACCTGTCTTGTGTTTCAACATCATGTGGAAGTG
AGTGGCGTCTGCCCTTGGGGTTGTAGTACGGTCGGGGTCAGGAGTGTGTA
TCTATGTTGCACATTCCCACGTGAGAGGTAGAACAACCTTGTCCTGAATT
CGCAACAAGCCTCGCCGGTGTCGCCAAAGCTGTCGCCACAAATTCGTCAT
TGGTTAACGGTAGAGCGAGCGTCCTTGAGGCGTGAACATTGAAGACGCGG
CTGTGTTCCCAAGACTCAACCCGGCACGGCTGCATTGTTCTCATCCAGGC
ATCTGGGACAGAGCAGCTTTCCACTCAGCGAGCAGGAATACTTGGAGCAC
CTGCAGGCACTCGCGGAGCTTCTGATGGAGTGGGATCGCGTGGATCAGTT
CAAGCGATCACTCGCCGAGACCAAGAAGCGACCGCAATCGTATTTCGGCT
ACGCCGTCGCGCTCCCACTCGATCTCGATCCTGACACGATGGTAGACTAC
TTCGACGACTCTTACTTTTAACTTTGGCTGGGAGAGCACCGCGACCCTTA
CGAACCACGGCTGTATTGATATATCTTGCTTGGTTGGGCGGCGCACGAGG
GCGTTTGACGGTATATACGATTGTGTGTTGCTGGGCATTAGTGGCATATG
CCGTCCCGAAGGTTTGCCGCAATGCTTGTTTGTTGTCGTGTGGCGCATTC
CTAACCGTTGGTTGGAGAGGGGTCGTTGTACCAACTCGCCGAGAAAAGGA
ATTGTAGAAAATCGTTACTCATTTGGACGTTCGGGTGGCGAACCAGAAGG
TGCGGGGCCACACCTTCAGGCTTGAAACCGTATGTATATGCCGGGAGAAA
GGGTAATTTTGCGGAAGGCACGACGTGTGACTAGAGAAGCAGAGATGCAG
TGAGGTTCATATCAACGTAGGAAAGGGAGTACAGGGTTTTTTAATTGACT
TCTCGTGCATCACTCGAAGAATTCGCTTGCGTGAGTTACGTACATATTAC
AAGACTGTGTGGTGAACGCGAGACCCGCACACCATACACACACCTCTTGC
GGCCGTGAAATGCCCTCTTCTCG back to topCoding sequence (CDS) from alignment at Scaffold_441:325003..328225+ >EsuBft100_22a-0001 ID=EsuBft100_22a-0001|Name=EsuBft100_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=669bp|location=Sequence derived from alignment at Scaffold_441:325003..328225+ (Ectocarpus subulatus male Bft15b)
ATGTTACGTCAATCGGTAGCAGCTGTCGTAGCAGCCGTCGCGCTCGTGGG
AGCAAGAAACAGATCGGCAGAAGGATTTCGAAATGTGGGTGTCGCGCGGA
GCGGTCGTGCCCGACCAGATCGGTGTCAGAGCGTGGGTAAGCTCTCGGCA
AGTCCAATGGAGAAGTTCATGAGTGGTTTGGAGAAGATGATGACCGGTCC
GCAGCTCGAAGGGAGCATGGACACCCCCCAGGAGCAAGAGCAGCAGGAAG
AACCCCAAGACATGAGTGCTTTCCGAGAGAGCCTGATCAGGCAGAGCAGG
AAAGACAGCTTGAAGAAGAAGGAAGAGTTCACGGGTTACGACATGTACGA
CTTGATCGTCGACAAGTTCGACGTACCATATGACGTTCAAATCAACAAAA
CAGTATGGATGGGCAAACCTGTCTTGTGTTTCAACATCATGTGGAAGCAT
CTGGGACAGAGCAGCTTTCCACTCAGCGAGCAGGAATACTTGGAGCACCT
GCAGGCACTCGCGGAGCTTCTGATGGAGTGGGATCGCGTGGATCAGTTCA
AGCGATCACTCGCCGAGACCAAGAAGCGACCGCAATCGTATTTCGGCTAC
GCCGTCGCGCTCCCACTCGATCTCGATCCTGACACGATGGTAGACTACTT
CGACGACTCTTACTTTTAA back to top
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