EsuBft1007_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
ProteomeId	EsuBft1007_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	404
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-13
Date creation	2016-06-13

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_519:186111..190367-
coding sequence from alignment at Scaffold_519:186111..190367-

spliced messenger RNA

>EsuBft1007_2a-0001 ID=EsuBft1007_2a-0001|Name=EsuBft1007_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4045bp|location=Sequence derived from alignment at Scaffold_519:186111..190367- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CAACATCGATAGACGGGGAAACATCACTCTGAGGTACTACACCGGAAGTG
GTGGACGGGATGCTCGAAGCCGAAGGTACAACACCGGCAGTACCGATGGA
CGGGAAGCTCGAAGTCGAAGGTACAACACCGGCAGTACCGATGGACGGGA
AGCTCGAAGTCGAAGGTACAACACCGGCAGTACCGATGGACGGGAAGCTC
GAACTCGGACCGTACCCTGCACCCGATCCTGAAAATTGAGAAGGGGGAGG
GGGGTTTTGGGCGAAAAGGCCAGTGCCAACGCCAGGCGGAGACGCTTGGC
GGACAACGGGGGGAGGGACAACGGTAGAGGGGATTACATCACCGTCGCGG
TACGAGGGGGGCAAGCGGGTGGCCGATAGAGAGCATCCGATATCCGAATA
TGCGAAACTAAGCCGACCGCCGAAAAGGTGCACACCCCTCTCATCCAACA
CTATCCTGTGCTTTTTCTGCGTTTGGTGCAGGGAGAACAAGTTGAACGAA
ATTCCTGGCACCACGTACACGTCTGTCAATTGGGCACAAAAATCCACTTC
TCCCGAGCGGCCTCCTGCCATATGGAATGCCAGATTGACACTACCGACAC
ACTCCACGCGCAAATGAGCACCATTGCCTACTCTGATGTATTCTTTGCCG
GGGGGAACAGGCGAGATGTTGTACATTTTGGAGCTGTTACTCACAAAATG
GTTGCTTGCACCGCTATCCGACCAAAATACCTCCCTACCAGGACTGTAAT
CGCAACTCTGGGCAGACAAAGCAAAACCAAGATCACCACATGCGACACTG
CCTACATCACTCGAAACCGAAAGCGAACTCATCTCGTCAGCGGACACAAA
GTGTGCCATCAGGGAGTGCAGATGCCCAGGCGGAAAAGCTGCTGCTCCGG
GAGAAGGCGACTGGGGCGGGGCATGGGTGAAGTGTTGCCGCTGCTGCTGC
TGCTGCTGCGGCTGAAACGACGGCGGTCGCGGAGGCTGCGGTGGTGGCTG
CTGCTGCTGGTAGTACGACGTCGGAGGCGGGTGGTACGGCTGTTGCTGGT
AATAGTCTGGCGAAGGCTGGTGCTGCTGGTGCTGCTGCTGGTGCTGCTGT
TGTTGCTCCCACCCCCCATACTCGCTACCATACGCGGGCCCCCCGTAGGG
CATAGCACTATACGCATGCGTCACATTTGCATGCCCGTACGGAGGCCGCC
ACGGCGGCTGTGGCGGACGAGGGGGAGCTGCATACCTGTGCTGATGCTGT
CCTCCGTAGCCGCTGTGAGGTCCGTGCTGAGGCCCGCCGCCCCAGCCCCC
CCCACTGCTGTAGCTCGGCTGCTGCTGCGGCGGTCCATGAAGTTGCTGTT
GCTGGGGATGCTGCTGTTGAGGCTGCTGTGGCTGATGCTGCTGTTGCTGA
GGCTGCTGTTGCTCCTGTTTCTTCTGACGGTCGCGTTGAGTGCGGCACTG
GGCGTTGGTGTGGGACAAGTGCGGATGTAGGTAGCAGTGGTCGCTGTCGG
CTCCGCTCTCTCCTGCTTTCTTGTTTCCTCTCCCTCTGCTCCTGCTCCGA
CTCCGGGCGCCTCCGTCTCCGTCCTGTCCCCCGCCGTTTCCACTCGACCC
ATTTTGGACACGTCCATCGCCCCGGATACCACCGGAAGCGACGAACGCGT
GCCCCGCGCCATTCTTTGGTTCCTCCTCCCGACGGCGAAGCAATTCCGCA
TGGGCATCTCGTACACCCTTTTCGATTTTTTCGCGCGAGGGGGGAATCGG
TGACATAGTCAGAATTTTCTTTTCCATCGTGTACTCGTCGGAAAGGTGGT
ACACCATGTGGGCATTGGCATCTTCGTCGGAGAAAGTAACACCGTGCGAG
GCTAGCCTACTGCGCAAAACAGCAAATCTCCCGAAGTATTCTTGGGGGGT
CTCGCCTACTTTCATCTCAAGACCGTGGTATTGGGATGACAGTCTTTCCT
TCTCCGCTCTGGCACGCGGCTCGTAATAGTTCAAGAAAATTTTCCAACCT
CCGCTTGGACTACCATCAGCGATGATCTGGGTAAGGATTGGCATGTATGT
TACAGACGTGATCAGCAGGTTCCACGCCGTAATTGCCTTCTCTACGCTAT
CAGGCGAGTGCATCCTATGCAATTCCTCCATGTCTATTCCTTCTAGCCCG
ACTGGAATTCTGTGGTCACTCAATACCACTTCCCTGACTCCTTCTTGCGC
AAACATAGCAATCATGTTCGATCGAAAAATCAAAAATCTTGCCTGCTCAT
CTTCCCCTTGCCTAAAAATCCCATCCCAAGGCGCTAGGCGCTTAACCTCA
GTCAGGCGAATACTTCCTCCTGTATTGGGTACTCTACCGCTGTCCCGTGG
TGATATCTGCAGGCGGCTGGTCAGGGCGTCGGCGAGAGTGCGGGCGATGT
CATCTACGGCCGGGTTCGCCGATGGCCGCCCCGCTTGTTGCTGGTGGCGT
GCCTCGTGCTCGCTTCCGGTCCGGACGTTCTCTGTCCTCTGCTCCTCCTC
GTCTTGTTGCCGTCTTATGTCGGCCAGTCGTTGTTGTACCCTCATCTCCA
CCAACTCGTTGATGCGGGCGTCCTCGTCTTCTGCGTGACGGGCGCCTCGT
TCTTGGTCGGCGCTGGACATCGGTGACAGCTGCTGATCGCCGCAAAGCGA
TACTCCAAACTAAGCTCGACGCGAATCTCGTAGACGACGTGTCATACGCT
AGCGTGATCGATAATTCGGGTGGCTCAGTTGTGTGCGATGGGAGTGTAGA
GCAGCTCGGCCATGACGGGCCGTAGGGGTAGGTAAAGTCGTACAGACGTG
TTGTATCCGTGTTGTCGTGTTGTAGTGTTGTATTAATCGGGGGCGTGCTC
GTGCTCGTCAAACCATCACGGTATCGAGTCACGCCTTCATGCTTTCTCAC
ACAACGAATCTCTCTGAATCCTCACCAAAAGCCTCTCACAACCAAGGAAA
ATATGTAGAAAGTTCCTGTTCCTCCGCATCTCATCACTGCAATATTCGTA
CGTACGTACATAACATCTCAACCATCATACTATGCTACGAGTATATCGAA
TAGACGTGCTCGCAGCAGGGGATTAACGGTGTGTCCTTCTGTCAATGCGT
CGCGTGGTATCCTCCTAATGTACCCCCTCCTACTGCGGAAGAAATAAATA
CGGAACAGATATCGGCAGAAGATATGAATCCGAAAAGTTCCAAATCAAGA
TCCTGAAAACGTACCGTCCGTCTGAATGAGCTGAAGGTAGACAACATACG
ATACAGCAGTACTGTACTACATGAATTATGATTCGCAACACATTGGTGGT
GAAAGCGGGGCACTCCTATTTCCTTCTAAAAACGCACCACATCATTCTAT
TGCGGCGGGGCTTGCTCTCTGGAATCGGTCGCGGATGGACGTGGTATGCT
CCTCTCCCCTCCCTGCTGACGCAGCTACATGTAATTCGGAGGAGAAAAAA
TCGGTTCCTAGATCAAAAAGGCAAGACGACACAAAGTTAGAGTTGTTACG
TCCGTCCGGGGTCAAAGCGGAAAGAAAGGCGACGGTATGCGATAATGCAT
TATATTCTACTGTATACTTCTGTGTAGATAGGCGTAGTATACGGGGCAAA
TTTCCCTTCTCAAACGCGCATCGCTCAACATGGGGTGTGTCTTATCAGGC
CAAAAAAAATACGTATTTGGTTACGAAACCGCATTTTCTTGAAATATATG
GAGGCGTTCCTCTACGTTTCCGTAAAAAGAGCAAGGCGTATTTTTTGGGG
GCTTGCTCCTTGTACTGTTCGGTGAAAAATTTCCCGCTTTTTTGCGACTA
CCGGAGCAGACACCGGTCACGCGTGCTGTCTTCATCACACCACACCTAGA
CAGCACCAACAACACCCCAAAGTGCTTCCCAAGGCAACTCCACTACCATG
CCTGAGCGTGGGAAGCGTCAAGATCCCAGGGGGATCGCAGCGCAACGCCG
GGAGAAGCGCCGTCGGCGAGCTATCGACGAGGAGGATGTAGCCCATGACA
AGAGATTCACAGTCTTGGGTCTTGTGAGGGCCGTAGTAGTGGCGG

protein sequence of EsuBft1007_2a-0001

>EsuBft1007_2 ID=EsuBft1007_2|Name=EsuBft1007_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=59bp
MLEAEGTTPAVPMDGKLEVEGTTPAVPMDGKLEVEGTTPAVPMDGKLELG
PYPAPDPEN

mRNA from alignment at Scaffold_519:186111..190367-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1007_2a-0001 ID=EsuBft1007_2a-0001|Name=EsuBft1007_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4257bp|location=Sequence derived from alignment at Scaffold_519:186111..190367- (Ectocarpus subulatus male Bft15b)
CAACATCGATAGACGGGGAAACATCACTCTGAGGTACTACACCGGAAGTG
GTGGACGGGATGCTCGAAGCCGAAGGTACAACACCGGCAGTACCGATGGA
CGGGAAGCTCGAAGTCGAAGGTACAACACCGGCAGTACCGATGGACGGGA
AGCTCGAAGTCGAAGGTACAACACCGGCAGTACCGATGGACGGGAAGCTC
GAACTCGGACCGTACCCTGCACCCGATCCTGAAAATTGAGAAGGGGGAGG
GGGGTTTTGGGCGAAAAGGCCAGTGCCAACGCCAGGCGGAGACGCTTGGC
GGACAACGGGGGGAGGGACAACGGTAGAGGGGATTACATCACCGTCGCGG
TACGAGGGGGGCAAGCGGGTGGCCGATAGAGAGCATCCGATATCCGAATA
TGCGAAACTAAGCCGACCGCCGAAAAGGTGCACACCCCTCTCATCCAACA
CTATCCTGTGCTTTTTCTGCGTTTGGTGCAGGGAGAACAAGTTGAACGAA
ATTCCTGGCACCACGTACACGTCTGTCAATTGGGCACAAAAATCCACTTC
TCCCGAGCGGCCTCCTGCCATATGGAATGCCAGATTGACACTACCGACAC
ACTCCACGCGCAAATGAGCACCATTGCCTACTCTGATGTATTCTTTGCCG
GGGGGAACAGGCGAGATGTTGTACATTTTGGAGCTGTTACTCACAAAATG
GTTGCTTGCACCGCTATCCGACCAAAATACCTCCCTACCAGGACTGTAAT
CGCAACTCTGGGCAGACAAAGCAAAACCAAGATCACCACATGCGACACTG
CCTACATCACTCGAAACCGAAAGCGAACTCATCTCGTCAGCGGACACAAA
GTGTGCCATCAGGGAGTGCAGATGCCCAGGCGGAAAAGCTGCTGCTCCGG
GAGAAGGCGACTGGGGCGGGGCATGGGTGAAGTGTTGCCGCTGCTGCTGC
TGCTGCTGCGGCTGAAACGACGGCGGTCGCGGAGGCTGCGGTGGTGGCTG
CTGCTGCTGGTAGTACGACGTCGGAGGCGGGTGGTACGGCTGTTGCTGGT
AATAGTCTGGCGAAGGCTGGTGCTGCTGGTGCTGCTGCTGGTGCTGCTGT
TGTTGCTCCCACCCCCCATACTCGCTACCATACGCGGGCCCCCCGTAGGG
CATAGCACTATACGCATGCGTCACATTTGCATGCCCGTACGGAGGCCGCC
ACGGCGGCTGTGGCGGACGAGGGGGAGCTGCATACCTGTGCTGATGCTGT
CCTCCGTAGCCGCTGTGAGGTCCGTGCTGAGGCCCGCCGCCCCAGCCCCC
CCCACTGCTGTAGCTCGGCTGCTGCTGCGGCGGTCCATGAAGTTGCTGTT
GCTGGGGATGCTGCTGTTGAGGCTGCTGTGGCTGATGCTGCTGTTGCTGA
GGCTGCTGTTGCTCCTGTTTCTTCTGACGGTCGCGTTGAGTGCGGCACTG
GGCGTTGGTGTGGGACAAGTGCGGATGTAGGTAGCAGTGGTCGCTGTCGG
CTCCGCTCTCTCCTGCTTTCTTGTTTCCTCTCCCTCTGCTCCTGCTCCGA
CTCCGGGCGCCTCCGTCTCCGTCCTGTCCCCCGCCGTTTCCACTCGACCC
ATTTTGGACACGTCCATCGCCCCGGATACCACCGGAAGCGACGAACGCGT
GCCCCGCGCCATTCTTTGGTTCCTCCTCCCGACGGCGAAGCAATTCCGCA
TGGGCATCTCGTACACCCTTTTCGATTTTTTCGCGCGAGGGGGGAATCGG
TGACATAGTCAGAATTTTCTTTTCCATCGTGTACTCGTCGGAAAGGTGGT
ACACCATGTGGGCATTGGCATCTTCGTCGGAGAAAGTAACACCGTGCGAG
GCTAGCCTACTGCGCAAAACAGCAAATCTCCCGAAGTATTCTTGGGGGGT
CTCGCCTACTTTCATCTCAAGACCGTGGTATTGGGATGACAGTCTTTCCT
TCTCCGCTCTGGCACGCGGCTCGTAATAGTTCAAGAAAATTTTCCAACCT
CCGCTTGGACTACCATCAGCGATGATCTGGGTAAGGATTGGCATGTATGT
TACAGACGTGATCAGCAGGTTCCACGCCGTAATTGCCTTCTCTACGCTAT
CAGGCGAGTGCATCCTATGCAATTCCTCCATGTCTATTCCTTCTAGCCCG
ACTGGAATTCTGTGGTCACTCAATACCACTTCCCTGACTCCTTCTTGCGC
AAACATAGCAATCATGTTCGATCGAAAAATCAAAAATCTTGCCTGCTCAT
CTTCCCCTTGCCTAAAAATCCCATCCCAAGGCGCTAGGCGCTTAACCTCA
GTCAGGCGAATACTTCCTCCTGTATTGGGTACTCTACCGCTGTCCCGTGG
TGATATCTGCAGGCGGCTGGTCAGGGCGTCGGCGAGAGTGCGGGCGATGT
CATCTACGGCCGGGTTCGCCGATGGCCGCCCCGCTTGTTGCTGGTGGCGT
GCCTCGTGCTCGCTTCCGGTCCGGACGTTCTCTGTCCTCTGCTCCTCCTC
GTCTTGTTGCCGTCTTATGTCGGCCAGTCGTTGTTGTACCCTCATCTCCA
CCAACTCGTTGATGCGGGCGTCCTCGTCTTCTGCGTGACGGGCGCCTCGT
TCTTGGTCGGCGCTGGACATCGGTGACAGCTGCTGATCGCCGCAAAGCGA
TACTCCAAACTAAGCTCGACGCGAATCTCGTAGACGACGTGTCATACGCT
AGCGTGATCGATAATTCGGGTGGCTCAGTTGTGTGCGATGGGAGTGTAGA
GCAGCTCGGCCATGACGGGCCGTAGGGGTAGGTAAAGTCGTACAGACGTG
TTGTATCCGTGTTGTCGTGTTGTAGTGTTGTATTAATCGGGGGCGTGCTC
GTGCTCGTCAAACCATCACGGTATCGAGTCACGCCTTCATGCTTTCTCAC
ACAACGAATCTCTCTGAATCCTCACCAAAAGCCTCTCACAACCAAGGAAA
ATATGTAGAAAGTTCCTGTTCCTCCGCATCTCATCACTGCAATATTCGTA
CGTACGTACATAACATCTCAACCATCATACTATGCTACGAGTATATCGAA
TAGACGTGCTCGCAGCAGGGGATTAACGGTGTGTCCTTCTGTCAATGCGT
CGCGTGGTATCCTCCTAATGTACCCCCTCCTACTGCGGAAGAAATAAATA
CGGAACAGATATCGGCAGAAGATATGAATCCGAAAAGTTCCAAATCAAGA
TCCTGAAAACGTACCGTCCGTCTGAATGAGCTGAAGGTAGACAACATACG
ATACAGCAGTACTGTACTACATGAATTATGATTCGCAACACATTGGTGGT
GAAAGCGGGGCACTCCTATTTCCTTCTAAAAACGCACCACATCATTCTAT
TGCGGCGGGGCTTGCTCTCTGGAATCGGTCGCGGATGGACGTGGTATGCT
CCTCTCCCCTCCCTGCTGACGCAGCTACATGTAATTCGGAGGAGAAAAAA
TCGGTTCCTAGATCAAAAAGGCAAGACGACACAAAGTTAGAGTTGTTACG
TCCGTCCGGGGTCAAAGCGGAAAGAAAGGCGACGGTATGCGATAATGCAT
TATATTCTACTGTATACTTCTGTGTAGATAGGCGTAGTATACGGGGCAAA
TTTCCCTTCTCAAACGCGCATCGCTCAACATGGGTAAGTACTGTACAAGT
GCTCTCTCGGCTGTTATATTATATGGCCCCAACGGAAGGTGAATAAATAT
TTGCGGGCTTGCCCTCTGGGTCGCGGATAGACATGTTCATGTACCCTTCG
CACGATCATCTTACTGAAAAAGTTCCGGTTTTGCTCGAGGTTCTCCCGAT
CGATGTCCTTTCGGTCATACGTCTCGTGATATATATGCATATTAGGGTGT
GTCTTATCAGGCCAAAAAAAATACGTATTTGGTTACGAAACCGCATTTTC
TTGAAATATATGGAGGCGTTCCTCTACGTTTCCGTAAAAAGAGCAAGGCG
TATTTTTTGGGGGCTTGCTCCTTGTACTGTTCGGTGAAAAATTTCCCGCT
TTTTTGCGACTACCGGAGCAGACACCGGTCACGCGTGCTGTCTTCATCAC
ACCACACCTAGACAGCACCAACAACACCCCAAAGTGCTTCCCAAGGCAAC
TCCACTACCATGCCTGAGCGTGGGAAGCGTCAAGATCCCAGGGGGATCGC
AGCGCAACGCCGGGAGAAGCGCCGTCGGCGAGCTATCGACGAGGAGGATG
TAGCCCATGACAAGAGATTCACAGTCTTGGGTCTTGTGAGGGCCGTAGTA
GTGGCGG

Coding sequence (CDS) from alignment at Scaffold_519:186111..190367-

>EsuBft1007_2a-0001 ID=EsuBft1007_2a-0001|Name=EsuBft1007_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=180bp|location=Sequence derived from alignment at Scaffold_519:186111..190367- (Ectocarpus subulatus male Bft15b)
ATGCTCGAAGCCGAAGGTACAACACCGGCAGTACCGATGGACGGGAAGCT
CGAAGTCGAAGGTACAACACCGGCAGTACCGATGGACGGGAAGCTCGAAG
TCGAAGGTACAACACCGGCAGTACCGATGGACGGGAAGCTCGAACTCGGA
CCGTACCCTGCACCCGATCCTGAAAATTGA