EsuBft1007_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1007_2a-0001
Unique Name	EsuBft1007_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_519	contig	Scaffold_519:186111..190367 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1007_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	404
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1007_2a	EsuBft1007_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_519 186111..190367 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1007_2a-0001	EsuBft1007_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_519 190129..190308 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1007_2a-0001-exon	agat-exon-97082	Ectocarpus subulatus male Bft15b	exon	Scaffold_519 186111..186522 -
EsuBft1007_2a-0001-exon	EsuBft1007_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_519 186735..190367 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1007_2a-0001-exon	agat-three_prime_utr-57	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_519 186111..186522 -
EsuBft1007_2a-0001-exon	agat-three_prime_utr-58	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_519 186735..190128 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1007_2a-0001-cds	EsuBft1007_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_519 190129..190308 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1007_2a-0001-exon	agat-five_prime_utr-33	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_519 190309..190367 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_519:186111..190367-
coding sequence from alignment at Scaffold_519:186111..190367-

spliced messenger RNA

>EsuBft1007_2a-0001 ID=EsuBft1007_2a-0001|Name=EsuBft1007_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4045bp|location=Sequence derived from alignment at Scaffold_519:186111..190367- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CAACATCGATAGACGGGGAAACATCACTCTGAGGTACTACACCGGAAGTG
GTGGACGGGATGCTCGAAGCCGAAGGTACAACACCGGCAGTACCGATGGA
CGGGAAGCTCGAAGTCGAAGGTACAACACCGGCAGTACCGATGGACGGGA
AGCTCGAAGTCGAAGGTACAACACCGGCAGTACCGATGGACGGGAAGCTC
GAACTCGGACCGTACCCTGCACCCGATCCTGAAAATTGAGAAGGGGGAGG
GGGGTTTTGGGCGAAAAGGCCAGTGCCAACGCCAGGCGGAGACGCTTGGC
GGACAACGGGGGGAGGGACAACGGTAGAGGGGATTACATCACCGTCGCGG
TACGAGGGGGGCAAGCGGGTGGCCGATAGAGAGCATCCGATATCCGAATA
TGCGAAACTAAGCCGACCGCCGAAAAGGTGCACACCCCTCTCATCCAACA
CTATCCTGTGCTTTTTCTGCGTTTGGTGCAGGGAGAACAAGTTGAACGAA
ATTCCTGGCACCACGTACACGTCTGTCAATTGGGCACAAAAATCCACTTC
TCCCGAGCGGCCTCCTGCCATATGGAATGCCAGATTGACACTACCGACAC
ACTCCACGCGCAAATGAGCACCATTGCCTACTCTGATGTATTCTTTGCCG
GGGGGAACAGGCGAGATGTTGTACATTTTGGAGCTGTTACTCACAAAATG
GTTGCTTGCACCGCTATCCGACCAAAATACCTCCCTACCAGGACTGTAAT
CGCAACTCTGGGCAGACAAAGCAAAACCAAGATCACCACATGCGACACTG
CCTACATCACTCGAAACCGAAAGCGAACTCATCTCGTCAGCGGACACAAA
GTGTGCCATCAGGGAGTGCAGATGCCCAGGCGGAAAAGCTGCTGCTCCGG
GAGAAGGCGACTGGGGCGGGGCATGGGTGAAGTGTTGCCGCTGCTGCTGC
TGCTGCTGCGGCTGAAACGACGGCGGTCGCGGAGGCTGCGGTGGTGGCTG
CTGCTGCTGGTAGTACGACGTCGGAGGCGGGTGGTACGGCTGTTGCTGGT
AATAGTCTGGCGAAGGCTGGTGCTGCTGGTGCTGCTGCTGGTGCTGCTGT
TGTTGCTCCCACCCCCCATACTCGCTACCATACGCGGGCCCCCCGTAGGG
CATAGCACTATACGCATGCGTCACATTTGCATGCCCGTACGGAGGCCGCC
ACGGCGGCTGTGGCGGACGAGGGGGAGCTGCATACCTGTGCTGATGCTGT
CCTCCGTAGCCGCTGTGAGGTCCGTGCTGAGGCCCGCCGCCCCAGCCCCC
CCCACTGCTGTAGCTCGGCTGCTGCTGCGGCGGTCCATGAAGTTGCTGTT
GCTGGGGATGCTGCTGTTGAGGCTGCTGTGGCTGATGCTGCTGTTGCTGA
GGCTGCTGTTGCTCCTGTTTCTTCTGACGGTCGCGTTGAGTGCGGCACTG
GGCGTTGGTGTGGGACAAGTGCGGATGTAGGTAGCAGTGGTCGCTGTCGG
CTCCGCTCTCTCCTGCTTTCTTGTTTCCTCTCCCTCTGCTCCTGCTCCGA
CTCCGGGCGCCTCCGTCTCCGTCCTGTCCCCCGCCGTTTCCACTCGACCC
ATTTTGGACACGTCCATCGCCCCGGATACCACCGGAAGCGACGAACGCGT
GCCCCGCGCCATTCTTTGGTTCCTCCTCCCGACGGCGAAGCAATTCCGCA
TGGGCATCTCGTACACCCTTTTCGATTTTTTCGCGCGAGGGGGGAATCGG
TGACATAGTCAGAATTTTCTTTTCCATCGTGTACTCGTCGGAAAGGTGGT
ACACCATGTGGGCATTGGCATCTTCGTCGGAGAAAGTAACACCGTGCGAG
GCTAGCCTACTGCGCAAAACAGCAAATCTCCCGAAGTATTCTTGGGGGGT
CTCGCCTACTTTCATCTCAAGACCGTGGTATTGGGATGACAGTCTTTCCT
TCTCCGCTCTGGCACGCGGCTCGTAATAGTTCAAGAAAATTTTCCAACCT
CCGCTTGGACTACCATCAGCGATGATCTGGGTAAGGATTGGCATGTATGT
TACAGACGTGATCAGCAGGTTCCACGCCGTAATTGCCTTCTCTACGCTAT
CAGGCGAGTGCATCCTATGCAATTCCTCCATGTCTATTCCTTCTAGCCCG
ACTGGAATTCTGTGGTCACTCAATACCACTTCCCTGACTCCTTCTTGCGC
AAACATAGCAATCATGTTCGATCGAAAAATCAAAAATCTTGCCTGCTCAT
CTTCCCCTTGCCTAAAAATCCCATCCCAAGGCGCTAGGCGCTTAACCTCA
GTCAGGCGAATACTTCCTCCTGTATTGGGTACTCTACCGCTGTCCCGTGG
TGATATCTGCAGGCGGCTGGTCAGGGCGTCGGCGAGAGTGCGGGCGATGT
CATCTACGGCCGGGTTCGCCGATGGCCGCCCCGCTTGTTGCTGGTGGCGT
GCCTCGTGCTCGCTTCCGGTCCGGACGTTCTCTGTCCTCTGCTCCTCCTC
GTCTTGTTGCCGTCTTATGTCGGCCAGTCGTTGTTGTACCCTCATCTCCA
CCAACTCGTTGATGCGGGCGTCCTCGTCTTCTGCGTGACGGGCGCCTCGT
TCTTGGTCGGCGCTGGACATCGGTGACAGCTGCTGATCGCCGCAAAGCGA
TACTCCAAACTAAGCTCGACGCGAATCTCGTAGACGACGTGTCATACGCT
AGCGTGATCGATAATTCGGGTGGCTCAGTTGTGTGCGATGGGAGTGTAGA
GCAGCTCGGCCATGACGGGCCGTAGGGGTAGGTAAAGTCGTACAGACGTG
TTGTATCCGTGTTGTCGTGTTGTAGTGTTGTATTAATCGGGGGCGTGCTC
GTGCTCGTCAAACCATCACGGTATCGAGTCACGCCTTCATGCTTTCTCAC
ACAACGAATCTCTCTGAATCCTCACCAAAAGCCTCTCACAACCAAGGAAA
ATATGTAGAAAGTTCCTGTTCCTCCGCATCTCATCACTGCAATATTCGTA
CGTACGTACATAACATCTCAACCATCATACTATGCTACGAGTATATCGAA
TAGACGTGCTCGCAGCAGGGGATTAACGGTGTGTCCTTCTGTCAATGCGT
CGCGTGGTATCCTCCTAATGTACCCCCTCCTACTGCGGAAGAAATAAATA
CGGAACAGATATCGGCAGAAGATATGAATCCGAAAAGTTCCAAATCAAGA
TCCTGAAAACGTACCGTCCGTCTGAATGAGCTGAAGGTAGACAACATACG
ATACAGCAGTACTGTACTACATGAATTATGATTCGCAACACATTGGTGGT
GAAAGCGGGGCACTCCTATTTCCTTCTAAAAACGCACCACATCATTCTAT
TGCGGCGGGGCTTGCTCTCTGGAATCGGTCGCGGATGGACGTGGTATGCT
CCTCTCCCCTCCCTGCTGACGCAGCTACATGTAATTCGGAGGAGAAAAAA
TCGGTTCCTAGATCAAAAAGGCAAGACGACACAAAGTTAGAGTTGTTACG
TCCGTCCGGGGTCAAAGCGGAAAGAAAGGCGACGGTATGCGATAATGCAT
TATATTCTACTGTATACTTCTGTGTAGATAGGCGTAGTATACGGGGCAAA
TTTCCCTTCTCAAACGCGCATCGCTCAACATGGGGTGTGTCTTATCAGGC
CAAAAAAAATACGTATTTGGTTACGAAACCGCATTTTCTTGAAATATATG
GAGGCGTTCCTCTACGTTTCCGTAAAAAGAGCAAGGCGTATTTTTTGGGG
GCTTGCTCCTTGTACTGTTCGGTGAAAAATTTCCCGCTTTTTTGCGACTA
CCGGAGCAGACACCGGTCACGCGTGCTGTCTTCATCACACCACACCTAGA
CAGCACCAACAACACCCCAAAGTGCTTCCCAAGGCAACTCCACTACCATG
CCTGAGCGTGGGAAGCGTCAAGATCCCAGGGGGATCGCAGCGCAACGCCG
GGAGAAGCGCCGTCGGCGAGCTATCGACGAGGAGGATGTAGCCCATGACA
AGAGATTCACAGTCTTGGGTCTTGTGAGGGCCGTAGTAGTGGCGG

protein sequence of EsuBft1007_2a-0001

>EsuBft1007_2 ID=EsuBft1007_2|Name=EsuBft1007_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=59bp
MLEAEGTTPAVPMDGKLEVEGTTPAVPMDGKLEVEGTTPAVPMDGKLELG
PYPAPDPEN

mRNA from alignment at Scaffold_519:186111..190367-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1007_2a-0001 ID=EsuBft1007_2a-0001|Name=EsuBft1007_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4257bp|location=Sequence derived from alignment at Scaffold_519:186111..190367- (Ectocarpus subulatus male Bft15b)
CAACATCGATAGACGGGGAAACATCACTCTGAGGTACTACACCGGAAGTG
GTGGACGGGATGCTCGAAGCCGAAGGTACAACACCGGCAGTACCGATGGA
CGGGAAGCTCGAAGTCGAAGGTACAACACCGGCAGTACCGATGGACGGGA
AGCTCGAAGTCGAAGGTACAACACCGGCAGTACCGATGGACGGGAAGCTC
GAACTCGGACCGTACCCTGCACCCGATCCTGAAAATTGAGAAGGGGGAGG
GGGGTTTTGGGCGAAAAGGCCAGTGCCAACGCCAGGCGGAGACGCTTGGC
GGACAACGGGGGGAGGGACAACGGTAGAGGGGATTACATCACCGTCGCGG
TACGAGGGGGGCAAGCGGGTGGCCGATAGAGAGCATCCGATATCCGAATA
TGCGAAACTAAGCCGACCGCCGAAAAGGTGCACACCCCTCTCATCCAACA
CTATCCTGTGCTTTTTCTGCGTTTGGTGCAGGGAGAACAAGTTGAACGAA
ATTCCTGGCACCACGTACACGTCTGTCAATTGGGCACAAAAATCCACTTC
TCCCGAGCGGCCTCCTGCCATATGGAATGCCAGATTGACACTACCGACAC
ACTCCACGCGCAAATGAGCACCATTGCCTACTCTGATGTATTCTTTGCCG
GGGGGAACAGGCGAGATGTTGTACATTTTGGAGCTGTTACTCACAAAATG
GTTGCTTGCACCGCTATCCGACCAAAATACCTCCCTACCAGGACTGTAAT
CGCAACTCTGGGCAGACAAAGCAAAACCAAGATCACCACATGCGACACTG
CCTACATCACTCGAAACCGAAAGCGAACTCATCTCGTCAGCGGACACAAA
GTGTGCCATCAGGGAGTGCAGATGCCCAGGCGGAAAAGCTGCTGCTCCGG
GAGAAGGCGACTGGGGCGGGGCATGGGTGAAGTGTTGCCGCTGCTGCTGC
TGCTGCTGCGGCTGAAACGACGGCGGTCGCGGAGGCTGCGGTGGTGGCTG
CTGCTGCTGGTAGTACGACGTCGGAGGCGGGTGGTACGGCTGTTGCTGGT
AATAGTCTGGCGAAGGCTGGTGCTGCTGGTGCTGCTGCTGGTGCTGCTGT
TGTTGCTCCCACCCCCCATACTCGCTACCATACGCGGGCCCCCCGTAGGG
CATAGCACTATACGCATGCGTCACATTTGCATGCCCGTACGGAGGCCGCC
ACGGCGGCTGTGGCGGACGAGGGGGAGCTGCATACCTGTGCTGATGCTGT
CCTCCGTAGCCGCTGTGAGGTCCGTGCTGAGGCCCGCCGCCCCAGCCCCC
CCCACTGCTGTAGCTCGGCTGCTGCTGCGGCGGTCCATGAAGTTGCTGTT
GCTGGGGATGCTGCTGTTGAGGCTGCTGTGGCTGATGCTGCTGTTGCTGA
GGCTGCTGTTGCTCCTGTTTCTTCTGACGGTCGCGTTGAGTGCGGCACTG
GGCGTTGGTGTGGGACAAGTGCGGATGTAGGTAGCAGTGGTCGCTGTCGG
CTCCGCTCTCTCCTGCTTTCTTGTTTCCTCTCCCTCTGCTCCTGCTCCGA
CTCCGGGCGCCTCCGTCTCCGTCCTGTCCCCCGCCGTTTCCACTCGACCC
ATTTTGGACACGTCCATCGCCCCGGATACCACCGGAAGCGACGAACGCGT
GCCCCGCGCCATTCTTTGGTTCCTCCTCCCGACGGCGAAGCAATTCCGCA
TGGGCATCTCGTACACCCTTTTCGATTTTTTCGCGCGAGGGGGGAATCGG
TGACATAGTCAGAATTTTCTTTTCCATCGTGTACTCGTCGGAAAGGTGGT
ACACCATGTGGGCATTGGCATCTTCGTCGGAGAAAGTAACACCGTGCGAG
GCTAGCCTACTGCGCAAAACAGCAAATCTCCCGAAGTATTCTTGGGGGGT
CTCGCCTACTTTCATCTCAAGACCGTGGTATTGGGATGACAGTCTTTCCT
TCTCCGCTCTGGCACGCGGCTCGTAATAGTTCAAGAAAATTTTCCAACCT
CCGCTTGGACTACCATCAGCGATGATCTGGGTAAGGATTGGCATGTATGT
TACAGACGTGATCAGCAGGTTCCACGCCGTAATTGCCTTCTCTACGCTAT
CAGGCGAGTGCATCCTATGCAATTCCTCCATGTCTATTCCTTCTAGCCCG
ACTGGAATTCTGTGGTCACTCAATACCACTTCCCTGACTCCTTCTTGCGC
AAACATAGCAATCATGTTCGATCGAAAAATCAAAAATCTTGCCTGCTCAT
CTTCCCCTTGCCTAAAAATCCCATCCCAAGGCGCTAGGCGCTTAACCTCA
GTCAGGCGAATACTTCCTCCTGTATTGGGTACTCTACCGCTGTCCCGTGG
TGATATCTGCAGGCGGCTGGTCAGGGCGTCGGCGAGAGTGCGGGCGATGT
CATCTACGGCCGGGTTCGCCGATGGCCGCCCCGCTTGTTGCTGGTGGCGT
GCCTCGTGCTCGCTTCCGGTCCGGACGTTCTCTGTCCTCTGCTCCTCCTC
GTCTTGTTGCCGTCTTATGTCGGCCAGTCGTTGTTGTACCCTCATCTCCA
CCAACTCGTTGATGCGGGCGTCCTCGTCTTCTGCGTGACGGGCGCCTCGT
TCTTGGTCGGCGCTGGACATCGGTGACAGCTGCTGATCGCCGCAAAGCGA
TACTCCAAACTAAGCTCGACGCGAATCTCGTAGACGACGTGTCATACGCT
AGCGTGATCGATAATTCGGGTGGCTCAGTTGTGTGCGATGGGAGTGTAGA
GCAGCTCGGCCATGACGGGCCGTAGGGGTAGGTAAAGTCGTACAGACGTG
TTGTATCCGTGTTGTCGTGTTGTAGTGTTGTATTAATCGGGGGCGTGCTC
GTGCTCGTCAAACCATCACGGTATCGAGTCACGCCTTCATGCTTTCTCAC
ACAACGAATCTCTCTGAATCCTCACCAAAAGCCTCTCACAACCAAGGAAA
ATATGTAGAAAGTTCCTGTTCCTCCGCATCTCATCACTGCAATATTCGTA
CGTACGTACATAACATCTCAACCATCATACTATGCTACGAGTATATCGAA
TAGACGTGCTCGCAGCAGGGGATTAACGGTGTGTCCTTCTGTCAATGCGT
CGCGTGGTATCCTCCTAATGTACCCCCTCCTACTGCGGAAGAAATAAATA
CGGAACAGATATCGGCAGAAGATATGAATCCGAAAAGTTCCAAATCAAGA
TCCTGAAAACGTACCGTCCGTCTGAATGAGCTGAAGGTAGACAACATACG
ATACAGCAGTACTGTACTACATGAATTATGATTCGCAACACATTGGTGGT
GAAAGCGGGGCACTCCTATTTCCTTCTAAAAACGCACCACATCATTCTAT
TGCGGCGGGGCTTGCTCTCTGGAATCGGTCGCGGATGGACGTGGTATGCT
CCTCTCCCCTCCCTGCTGACGCAGCTACATGTAATTCGGAGGAGAAAAAA
TCGGTTCCTAGATCAAAAAGGCAAGACGACACAAAGTTAGAGTTGTTACG
TCCGTCCGGGGTCAAAGCGGAAAGAAAGGCGACGGTATGCGATAATGCAT
TATATTCTACTGTATACTTCTGTGTAGATAGGCGTAGTATACGGGGCAAA
TTTCCCTTCTCAAACGCGCATCGCTCAACATGGGTAAGTACTGTACAAGT
GCTCTCTCGGCTGTTATATTATATGGCCCCAACGGAAGGTGAATAAATAT
TTGCGGGCTTGCCCTCTGGGTCGCGGATAGACATGTTCATGTACCCTTCG
CACGATCATCTTACTGAAAAAGTTCCGGTTTTGCTCGAGGTTCTCCCGAT
CGATGTCCTTTCGGTCATACGTCTCGTGATATATATGCATATTAGGGTGT
GTCTTATCAGGCCAAAAAAAATACGTATTTGGTTACGAAACCGCATTTTC
TTGAAATATATGGAGGCGTTCCTCTACGTTTCCGTAAAAAGAGCAAGGCG
TATTTTTTGGGGGCTTGCTCCTTGTACTGTTCGGTGAAAAATTTCCCGCT
TTTTTGCGACTACCGGAGCAGACACCGGTCACGCGTGCTGTCTTCATCAC
ACCACACCTAGACAGCACCAACAACACCCCAAAGTGCTTCCCAAGGCAAC
TCCACTACCATGCCTGAGCGTGGGAAGCGTCAAGATCCCAGGGGGATCGC
AGCGCAACGCCGGGAGAAGCGCCGTCGGCGAGCTATCGACGAGGAGGATG
TAGCCCATGACAAGAGATTCACAGTCTTGGGTCTTGTGAGGGCCGTAGTA
GTGGCGG

Coding sequence (CDS) from alignment at Scaffold_519:186111..190367-

>EsuBft1007_2a-0001 ID=EsuBft1007_2a-0001|Name=EsuBft1007_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=180bp|location=Sequence derived from alignment at Scaffold_519:186111..190367- (Ectocarpus subulatus male Bft15b)
ATGCTCGAAGCCGAAGGTACAACACCGGCAGTACCGATGGACGGGAAGCT
CGAAGTCGAAGGTACAACACCGGCAGTACCGATGGACGGGAAGCTCGAAG
TCGAAGGTACAACACCGGCAGTACCGATGGACGGGAAGCTCGAACTCGGA
CCGTACCCTGCACCCGATCCTGAAAATTGA