Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FSW0 |
| ProteomeId | EsuBft1006_2 |
| Protein domains | IPR017986 |
| Protein domains | IPR015943 |
| Protein domains | IPR020472 |
| Protein domains | IPR019775 |
| Protein domains | PTHR22847 |
| Protein domains | IPR001680 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | uncharacterized wd repeat-containing protein alr2800 os:nostoc (strain pcc 7120 utex 2576) gn:a [Automatic annotation] |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 2388 |
| Hectar predicted targeting category | other localisation |
| Evalue | 9.11e-298 |
| EggNOG OGs | COG2319@1|root,KOG0263@2759|Eukaryota |
| Ec32 ortholog description | WD40/YVTN repeat-like-containing domain |
| Ec32 ortholog | Ec-27_006570.1 |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| KEGG ko | ko:K01265,ko:K11797 |
| EC | 3.4.11.18 |
| Description | transcription initiation from RNA polymerase II promoter |
| COG category | Q |
| BRITE | ko00000,ko01000,ko01002,ko04121 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0031227 |
| GO | 0005515 |
| GO | 0005856 |
| GO | 0050896 |
| GO | 0097159 |
| GO | 1901363 |
| GO | 0006351 |
| GO | 0008152 |
| GO | 0043234 |
| GO | 0044446 |
| GO | 0016740 |
| GO | 0050794 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1006_2a-0001 ID=EsuBft1006_2a-0001|Name=EsuBft1006_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2388bp|location=Sequence derived from alignment at Scaffold_472:108459..112110+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CTCAGACACCCCAGCGGATACTACAAGCAGTAGAACAAACGATGTCTTCG
ACCACCTTCGAGGAACGTAAGAGTGTCACTCTGGCGGCCTGCTTCAACGA
CAAGCGTTGCCATCGGCGCCTGATCGGCCATCGAGCTCGCACGTTTGATT
TTCAGTTCCACCCAACAGAAGACGCCGCTATATCAGCGAGCGAGGACGGG
ACGGCCCGCGTGTGGGACCTCAGCAGCGGAAGGTGCGCCAAGTCCCTTGA
GGGGCACAACAAAAAACACGAGGTGTTGCGGGCGTGCTGGGCGCCGCCGG
GGGCGGCGAACGACTCGGTCTCCGTTGCTACCGGCTCGGCCGACGGCATC
GTCCGCCTGTGGGGCATACGGCATGGCGACGGCAGGGACGGAAAGAGCGG
GTTAGACCGATACCAATCCCTCACGGTCGTGGGGCAGCTGCGGCATCGCA
ACGAGGCGAAAGGGCTCGACGGCCAGGTCTACTCTTGCCACTTCATTCCC
GCCCCCAGCGACGGCGCACCGCCATCATCGGCAGCGGCGATGTGTCTGCT
CACAGCTAGCGACAGCAGCGTTCACCTGTGGGACGTCGAGACGCGGAAGC
GTGTATCGTCCCGAGCCCTGTCGAAAGTCGGGGCACATTCCATCGGCGGG
GAGCGGAACCCGGACGACCTCGCGTTCGTGTTCGATGCCAAGCCTCGCCC
GGGGTCGGGGAGCTCCGTTCTCGCCGTCGCCCTAAGCGACGGCACGGTGA
GGGTCGGGGATGTCCTCCAAGAGGGCGAAAAGGCCGCGGTGCTGCGAGGA
GTCACCGACACCCATCTCACGAGTTTGGCGTGGTCGGACGATGGGACGGT
CTTGGCTTCGTGCGGGGGAAACGGAACGATTACGGTGTGGGACACGAGAA
CCTGGACGGTAAGGTCGGTCTTGTGGGGCCACTCGAGACCGGTGTACGGG
GCGGCCTTCTACCCCTGTGCTGGCAACGGCGGGGGAGGAGCGGCGGCGGC
GGCGGCGGCGGCGGCGGCAACATCGGGACAAGACTGCCCGCCACAGCTCT
TGCTGTCGTGGTCTAGCGACGAGACCGTGTGCGCTTGGGACACAGGAAGA
GCCACCGGTGACGCGACAGCCCCGCTCGCAACCCTTTCAGTCGATAAAGG
GTTTCCCGTATACAGTTGCTCGGTCTCGGCCGATGGCCGGAGGTTTGCCT
TGGCGGGAGGAGGCGGAGATGAGAAGAGCGCCGGCTTCCTCGGCGTTCCC
ATCAAGCTCGTGGATCTGAGCGACGAAGCGAGAGCGAAAGACGGGAAAGA
CAGTTGTGCCGACAATGGGAGCAATAAACCAGCACAGGGATGACTGTTAC
TGCTGTGCATGTGATATGCTGCGGTCGTTCGATCTTAGCCTATGTTAGTG
TATTTACTATCGGGGGGATTTTCTCATGGTCTGAGTGTGCCGTGACTCGG
GCGAAGTATTAGAACCTAAGTGGGGAATGTATCTGGTAGAGATAACAATA
GCGAGCGGGAATACATCGGTGGTACTCATCGGCAGTCTTTTTGGTGCTGT
GCTTCAAGAGGGCGTCTCCGCTCGTCTCCTCTGTTTTATCCATCAAAAGC
AAAGTAGTACTTTTCATGCCTACCAGCTAACCTGAGGAATTAAAACAACA
TTTTTTTCGTCGAAGAATTGACGAGGACAAGCCTTCCTTACCGAGCGTGG
CTTTCGCGCATGACCCGCACGCCACAACCTGAAGCGCAAGGCGTGCATGG
GTAAACGTACGCCTCAAAATGGCGTCGTAGTTCAGAGCGTAATGGCAAAC
AGTAGGCTCATCGCGGTCGAGATTGCATAAGAGCAGTTCTGATGCTGAAA
AATGAAAAGCCGCTCCCGATCGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTCTTCACATTAAAAACCGTTCCGTTCTCTCTGCCCA
CTTGCTCTGTCCGTACTAGTCTAACAATTGACGGGGTCGATTCCCGTGGT
CACAGGTTAGCTTACCCAAAAAAAGAGGTACACGAACATGAAATGGACCC
GAAGGGTCTGCAAGCCACTTGAAGCCAACGACAGATAGTCTAGGCCACAC
CGCTCGCCTCTACACGCTATGCGAGGCAACCCTAGATTGGAAAAAGAATT
AAAGAAAGAGAAAGAAAAAGACAAAAGAAAAAGAAGAGAGCAGATGGAGA
ATCGGGAAAGAGAAGGAGTAAGACACGAGACGGAGAAAGACACACGCCGT
AGCGACAAACAACAAACAAACATGACAGAACAAAACAACACAAAACACAA
CACAGCACAAAGCGGGCCACCCGAGCCAGCAAATGGAGGTCATCGCTCGC
GGGGGGTTGGTGCAATGGTGCAGTGCCGGGGGGGGGGG back to topprotein sequence of EsuBft1006_2a-0001 >EsuBft1006_2 ID=EsuBft1006_2|Name=EsuBft1006_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=433bp
MSSTTFEERKSVTLAACFNDKRCHRRLIGHRARTFDFQFHPTEDAAISAS
EDGTARVWDLSSGRCAKSLEGHNKKHEVLRACWAPPGAANDSVSVATGSA
DGIVRLWGIRHGDGRDGKSGLDRYQSLTVVGQLRHRNEAKGLDGQVYSCH
FIPAPSDGAPPSSAAAMCLLTASDSSVHLWDVETRKRVSSRALSKVGAHS
IGGERNPDDLAFVFDAKPRPGSGSSVLAVALSDGTVRVGDVLQEGEKAAV
LRGVTDTHLTSLAWSDDGTVLASCGGNGTITVWDTRTWTVRSVLWGHSRP
VYGAAFYPCAGNGGGGAAAAAAAAAATSGQDCPPQLLLSWSSDETVCAWD
TGRATGDATAPLATLSVDKGFPVYSCSVSADGRRFALAGGGGDEKSAGFL
GVPIKLVDLSDEARAKDGKDSCADNGSNKPAQG back to topmRNA from alignment at Scaffold_472:108459..112110+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1006_2a-0001 ID=EsuBft1006_2a-0001|Name=EsuBft1006_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3652bp|location=Sequence derived from alignment at Scaffold_472:108459..112110+ (Ectocarpus subulatus male Bft15b)
CTCAGACACCCCAGCGGATACTACAAGCAGTAGAACAAACGATGTCTTCG
ACCACCTTCGAGGAACGTAAGAGTGTCACTCTGGCGGCCTGCTTCAACGA
CAAGCGTTGCCATCGGCGCCTGATCGGCCATCGAGCTCGCACGTTTGATT
TTCAGGTAAAATTCGAATTTCCTCTTCACGGACGGTACATGTAGACTACT
GCTGTACACGCACATGCAACGGACCCTTAGGTATTCGACTAAGCCGGCAG
AACTGCATTGCCGCGGCTTGCAGTACCTAGCGATGACATCTTTGTGACTA
TTTTTTGCCGTTCAGAGTTCATCCGAGATCGAACCGATGACTGTATGCAA
ATGGAATTTAAATATTTTGCAGTTGCGCCGCACGGATAAACCACGCTCGG
GTGGTACAAGCAGTAATTACACAGAGCATGCAGCGACAGACCACGTGTAC
ACGATCAATACAACCAATTTTCCACAGTGTAGTAATTCGTATCATTTGTA
CCTGTATCATGTACTACATGCGCCGGTCGCCCCGTCGTGGTCTCGTGGGA
AACCTCGAGAACCTTGAAGTATTGTTCTTGTAGCTGGTTGTGGGAAATCT
CTCTTGATATTACACTTGCCTTATGAAAGAGGAAGGAGTGCTGCTGAACC
CTTCTCGCGTTGAACTCGACGGCAAGTACCGCAGGGAGGAGGTGTTACAA
CATCAAAAATACGAAAGAATGCGAAGACCCCCGCGATATCTACGTTCCTG
CTGTGTGACCCCGGCTGATGCGTCAAGTACGGAACGTGCCCAGCACTGCG
AGCTGAGCACCTCCATTCTGAAGCCCCCCCCCCCCCCTATTTTCGCAAGC
GGGGCGGAGTACCCATACTCGCAAGGAAGGCGCTCGTGTTAAGGAATAAA
CGGTGTATCTTGACATCTCCGAGCACACGGGTAGTCTTCCAAAGCGTTGT
CGCTGAAAGGGCCGAGGCCGACACGCGATGGAGCCGTTTAACAGTCAGTC
TTCGTTCGCACGAGGACGTACCCAAACTCTGGGTCACGAGCAGTTTGTTG
GATACAGCCTGACCGTCATGCCACTATCTGCACAGCTGGCCGTGAAGTAC
GGTGTCGATCTGTTCGGTACGCACTCACCGTGTGCCGTCCCGAGTTTCGT
AGGGATGTTAGGCTTTTTGGTCGAAGGCACCACGGCCAGCTCTAAATCGA
TTACATCTCCGACCCCATGTCTCACCCCAACCCCAATGCAGTTCCACCCA
ACAGAAGACGCCGCTATATCAGCGAGCGAGGACGGGACGGCCCGCGTGTG
GGACCTCAGCAGCGGAAGGTGCGCCAAGTCCCTTGAGGGGCACAACAAAA
AACACGAGGTGTTGCGGGCGTGCTGGGCGCCGCCGGGGGCGGCGAACGAC
TCGGTCTCCGTTGCTACCGGCTCGGCCGACGGCATCGTCCGCCTGTGGGG
CATACGGCATGGCGACGGCAGGGACGGAAAGAGCGGGTTAGACCGATACC
AATCCCTCACGGTCGTGGGGCAGCTGCGGCATCGCAACGAGGCGAAAGGG
CTCGACGGCCAGGTCTACTCTTGCCACTTCATTCCCGCCCCCAGCGACGG
CGCACCGCCATCATCGGCAGCGGCGATGTGTCTGCTCACAGCTAGCGACA
GCAGCGTTCACCTGTGGGACGTCGAGACGCGGAAGCGTGTATCGTCCCGA
GCCCTGTCGAAAGTCGGGGCACATTCCATCGGCGGGGAGCGGAACCCGGA
CGACCTCGCGTTCGTGTTCGATGCCAAGCCTCGCCCGGGGTCGGGGAGCT
CCGTTCTCGCCGTCGCCCTAAGCGACGGCACGGTGAGGGTCGGGGATGTC
CTCCAAGAGGGCGAAAAGGCCGCGGTGCTGCGAGGAGTCACCGACACCCA
TCTCACGAGTTTGGCGTGGTCGGACGATGGGACGGTCTTGGCTTCGTGCG
GGGGAAACGGAACGATTACGGTGTGGGACACGAGAACCTGGACGGTAAGG
TCGGTCTTGTGGGGCCACTCGAGACCGGTGTACGGGGCGGCCTTCTACCC
CTGTGCTGGCAACGGCGGGGGAGGAGCGGCGGCGGCGGCGGCGGCGGCGG
CGGCAACATCGGGACAAGACTGCCCGCCACAGCTCTTGCTGTCGTGGTCT
AGCGACGAGACCGTGTGCGCTTGGGACACAGGAAGAGCCACCGGTGACGC
GACAGCCCCGCTCGCAACCCTTTCAGTCGATAAAGGGTTTCCCGTATACA
GTTGCTCGGTCTCGGCCGATGGCCGGAGGTTTGCCTTGGCGGGAGGAGGC
GGAGATGAGAAGAGCGCCGGCTTCCTCGGCGTTCCCATCAAGCTCGTGGA
TCTGAGCGACGAAGCGAGAGCGAAAGACGGGAAAGACAGTTGTGCCGACA
ATGGGAGCAATAAACCAGCACAGGGATGACTGTTACTGCTGTGCATGTGA
TATGCTGCGGTCGTTCGATCTTAGCCTATGTTAGTGTATTTACTATCGGG
GGGATTTTCTCATGGTCTGAGTGTGCCGTGACTCGGGCGAAGTATTAGAA
CCTAAGTGGGGAATGTATCTGGTAGAGATAACAATAGCGAGCGGGAATAC
ATCGGTGGTACTCATCGGCAGTCTTTTTGGTGCTGTGCTTCAAGAGGGCG
TCTCCGCTCGTCTCCTCTGTTTTATCCATCAAAAGCAAAGTAGTACTTTT
CATGCCTACCAGCTAACCTGAGGAATTAAAACAACATTTTTTTCGTCGAA
GAATTGACGAGGACAAGCCTTCCTTACCGAGCGTGGTAAGATACTGGTTC
GTGAGTATGTTGTGCAGGCTTTTGCGCATGACCCGCACGCCACAAGCTGA
AGCGCAAGTCGTGCATCGGGACATGTACGCCTCGAAAATGGCGTCCGTAC
TTCAGAGCGTAAGGGCAAACGCACAGTGGGGTCATCGCGGTGGTTCGTGC
GTATGTTGTGCAGGCTTTCGCGCATGACCCGCACGCCACAACCTGAAGCG
CAAGGCGTGCATGGGTAAACGTACGCCTCAAAATGGCGTCGTAGTTCAGA
GCGTAATGGCAAACAGTAGGCTCATCGCGGTCGAGATTGCATAAGAGCAG
TTCTGATGCTGAAAAATGAAAAGCCGCTCCCGATCGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTCTTCACATTAAAAACCGTTCC
GTTCTCTCTGCCCACTTGCTCTGTCCGTACTAGTCTAACAATTGACGGGG
TCGATTCCCGTGGTCACAGGTTAGCTTACCCAAAAAAAGAGGTACACGAA
CATGAAATGGACCCGAAGGGTCTGCAAGCCACTTGAAGCCAACGACAGAT
AGTCTAGGCCACACCGCTCGCCTCTACACGCTATGCGAGGCAACCCTAGA
TTGGAAAAAGAATTAAAGAAAGAGAAAGAAAAAGACAAAAGAAAAAGAAG
AGAGCAGATGGAGAATCGGGAAAGAGAAGGAGTAAGACACGAGACGGAGA
AAGACACACGCCGTAGCGACAAACAACAAACAAACATGACAGAACAAAAC
AACACAAAACACAACACAGCACAAAGCGGGCCACCCGAGCCAGCAAATGG
AGGTCATCGCTCGCGGGGGGTTGGTGCAATGGTGCAGTGCCGGGGGGGGG
GG back to topCoding sequence (CDS) from alignment at Scaffold_472:108459..112110+ >EsuBft1006_2a-0001 ID=EsuBft1006_2a-0001|Name=EsuBft1006_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1302bp|location=Sequence derived from alignment at Scaffold_472:108459..112110+ (Ectocarpus subulatus male Bft15b)
ATGTCTTCGACCACCTTCGAGGAACGTAAGAGTGTCACTCTGGCGGCCTG
CTTCAACGACAAGCGTTGCCATCGGCGCCTGATCGGCCATCGAGCTCGCA
CGTTTGATTTTCAGTTCCACCCAACAGAAGACGCCGCTATATCAGCGAGC
GAGGACGGGACGGCCCGCGTGTGGGACCTCAGCAGCGGAAGGTGCGCCAA
GTCCCTTGAGGGGCACAACAAAAAACACGAGGTGTTGCGGGCGTGCTGGG
CGCCGCCGGGGGCGGCGAACGACTCGGTCTCCGTTGCTACCGGCTCGGCC
GACGGCATCGTCCGCCTGTGGGGCATACGGCATGGCGACGGCAGGGACGG
AAAGAGCGGGTTAGACCGATACCAATCCCTCACGGTCGTGGGGCAGCTGC
GGCATCGCAACGAGGCGAAAGGGCTCGACGGCCAGGTCTACTCTTGCCAC
TTCATTCCCGCCCCCAGCGACGGCGCACCGCCATCATCGGCAGCGGCGAT
GTGTCTGCTCACAGCTAGCGACAGCAGCGTTCACCTGTGGGACGTCGAGA
CGCGGAAGCGTGTATCGTCCCGAGCCCTGTCGAAAGTCGGGGCACATTCC
ATCGGCGGGGAGCGGAACCCGGACGACCTCGCGTTCGTGTTCGATGCCAA
GCCTCGCCCGGGGTCGGGGAGCTCCGTTCTCGCCGTCGCCCTAAGCGACG
GCACGGTGAGGGTCGGGGATGTCCTCCAAGAGGGCGAAAAGGCCGCGGTG
CTGCGAGGAGTCACCGACACCCATCTCACGAGTTTGGCGTGGTCGGACGA
TGGGACGGTCTTGGCTTCGTGCGGGGGAAACGGAACGATTACGGTGTGGG
ACACGAGAACCTGGACGGTAAGGTCGGTCTTGTGGGGCCACTCGAGACCG
GTGTACGGGGCGGCCTTCTACCCCTGTGCTGGCAACGGCGGGGGAGGAGC
GGCGGCGGCGGCGGCGGCGGCGGCGGCAACATCGGGACAAGACTGCCCGC
CACAGCTCTTGCTGTCGTGGTCTAGCGACGAGACCGTGTGCGCTTGGGAC
ACAGGAAGAGCCACCGGTGACGCGACAGCCCCGCTCGCAACCCTTTCAGT
CGATAAAGGGTTTCCCGTATACAGTTGCTCGGTCTCGGCCGATGGCCGGA
GGTTTGCCTTGGCGGGAGGAGGCGGAGATGAGAAGAGCGCCGGCTTCCTC
GGCGTTCCCATCAAGCTCGTGGATCTGAGCGACGAAGCGAGAGCGAAAGA
CGGGAAAGACAGTTGTGCCGACAATGGGAGCAATAAACCAGCACAGGGAT
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