EsuBft1006_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1006_2a-0001
Unique Name	EsuBft1006_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_472	contig	Scaffold_472:108459..112110 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FSW0
ProteomeId	EsuBft1006_2
Protein domains	IPR017986
Protein domains	IPR015943
Protein domains	IPR020472
Protein domains	IPR019775
Protein domains	PTHR22847
Protein domains	IPR001680
Owner	apollo_admin@sb-roscoff.fr
Note	uncharacterized wd repeat-containing protein alr2800 os:nostoc (strain pcc 7120 utex 2576) gn:a [Automatic annotation]
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	2388
Hectar predicted targeting category	other localisation
Evalue	9.11e-298
EggNOG OGs	COG2319@1\|root,KOG0263@2759\|Eukaryota
Ec32 ortholog description	WD40/YVTN repeat-like-containing domain
Ec32 ortholog	Ec-27_006570.1
Date last modified	2016-06-13
Date creation	2016-06-13
KEGG ko	ko:K01265,ko:K11797
EC	3.4.11.18
Description	transcription initiation from RNA polymerase II promoter
COG category	Q
BRITE	ko00000,ko01000,ko01002,ko04121

Cross References

External references for this mRNA


Database	Accession
GO	0031227
GO	0005515
GO	0005856
GO	0050896
GO	0097159
GO	1901363
GO	0006351
GO	0008152
GO	0043234
GO	0044446
GO	0016740
GO	0050794

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1006_2a	EsuBft1006_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_472 108459..112110 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1006_2a-0001	EsuBft1006_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_472 108500..110887 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1006_2a-0001-exon	agat-exon-51615	Ectocarpus subulatus male Bft15b	exon	Scaffold_472 108459..108613 +
EsuBft1006_2a-0001-exon	agat-exon-51614	Ectocarpus subulatus male Bft15b	exon	Scaffold_472 109700..111243 +
EsuBft1006_2a-0001-exon	EsuBft1006_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_472 111422..112110 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1006_2a-0001-exon	agat-five_prime_utr-26	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_472 108459..108499 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1006_2a-0001-cds	EsuBft1006_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_472 108500..108613 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1006_2a-0001-exon	agat-three_prime_utr-48	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_472 110888..111243 +
EsuBft1006_2a-0001-exon	agat-three_prime_utr-49	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_472 111422..112110 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_472:108459..112110+
coding sequence from alignment at Scaffold_472:108459..112110+

spliced messenger RNA

>EsuBft1006_2a-0001 ID=EsuBft1006_2a-0001|Name=EsuBft1006_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2388bp|location=Sequence derived from alignment at Scaffold_472:108459..112110+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTCAGACACCCCAGCGGATACTACAAGCAGTAGAACAAACGATGTCTTCG
ACCACCTTCGAGGAACGTAAGAGTGTCACTCTGGCGGCCTGCTTCAACGA
CAAGCGTTGCCATCGGCGCCTGATCGGCCATCGAGCTCGCACGTTTGATT
TTCAGTTCCACCCAACAGAAGACGCCGCTATATCAGCGAGCGAGGACGGG
ACGGCCCGCGTGTGGGACCTCAGCAGCGGAAGGTGCGCCAAGTCCCTTGA
GGGGCACAACAAAAAACACGAGGTGTTGCGGGCGTGCTGGGCGCCGCCGG
GGGCGGCGAACGACTCGGTCTCCGTTGCTACCGGCTCGGCCGACGGCATC
GTCCGCCTGTGGGGCATACGGCATGGCGACGGCAGGGACGGAAAGAGCGG
GTTAGACCGATACCAATCCCTCACGGTCGTGGGGCAGCTGCGGCATCGCA
ACGAGGCGAAAGGGCTCGACGGCCAGGTCTACTCTTGCCACTTCATTCCC
GCCCCCAGCGACGGCGCACCGCCATCATCGGCAGCGGCGATGTGTCTGCT
CACAGCTAGCGACAGCAGCGTTCACCTGTGGGACGTCGAGACGCGGAAGC
GTGTATCGTCCCGAGCCCTGTCGAAAGTCGGGGCACATTCCATCGGCGGG
GAGCGGAACCCGGACGACCTCGCGTTCGTGTTCGATGCCAAGCCTCGCCC
GGGGTCGGGGAGCTCCGTTCTCGCCGTCGCCCTAAGCGACGGCACGGTGA
GGGTCGGGGATGTCCTCCAAGAGGGCGAAAAGGCCGCGGTGCTGCGAGGA
GTCACCGACACCCATCTCACGAGTTTGGCGTGGTCGGACGATGGGACGGT
CTTGGCTTCGTGCGGGGGAAACGGAACGATTACGGTGTGGGACACGAGAA
CCTGGACGGTAAGGTCGGTCTTGTGGGGCCACTCGAGACCGGTGTACGGG
GCGGCCTTCTACCCCTGTGCTGGCAACGGCGGGGGAGGAGCGGCGGCGGC
GGCGGCGGCGGCGGCGGCAACATCGGGACAAGACTGCCCGCCACAGCTCT
TGCTGTCGTGGTCTAGCGACGAGACCGTGTGCGCTTGGGACACAGGAAGA
GCCACCGGTGACGCGACAGCCCCGCTCGCAACCCTTTCAGTCGATAAAGG
GTTTCCCGTATACAGTTGCTCGGTCTCGGCCGATGGCCGGAGGTTTGCCT
TGGCGGGAGGAGGCGGAGATGAGAAGAGCGCCGGCTTCCTCGGCGTTCCC
ATCAAGCTCGTGGATCTGAGCGACGAAGCGAGAGCGAAAGACGGGAAAGA
CAGTTGTGCCGACAATGGGAGCAATAAACCAGCACAGGGATGACTGTTAC
TGCTGTGCATGTGATATGCTGCGGTCGTTCGATCTTAGCCTATGTTAGTG
TATTTACTATCGGGGGGATTTTCTCATGGTCTGAGTGTGCCGTGACTCGG
GCGAAGTATTAGAACCTAAGTGGGGAATGTATCTGGTAGAGATAACAATA
GCGAGCGGGAATACATCGGTGGTACTCATCGGCAGTCTTTTTGGTGCTGT
GCTTCAAGAGGGCGTCTCCGCTCGTCTCCTCTGTTTTATCCATCAAAAGC
AAAGTAGTACTTTTCATGCCTACCAGCTAACCTGAGGAATTAAAACAACA
TTTTTTTCGTCGAAGAATTGACGAGGACAAGCCTTCCTTACCGAGCGTGG
CTTTCGCGCATGACCCGCACGCCACAACCTGAAGCGCAAGGCGTGCATGG
GTAAACGTACGCCTCAAAATGGCGTCGTAGTTCAGAGCGTAATGGCAAAC
AGTAGGCTCATCGCGGTCGAGATTGCATAAGAGCAGTTCTGATGCTGAAA
AATGAAAAGCCGCTCCCGATCGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTCTTCACATTAAAAACCGTTCCGTTCTCTCTGCCCA
CTTGCTCTGTCCGTACTAGTCTAACAATTGACGGGGTCGATTCCCGTGGT
CACAGGTTAGCTTACCCAAAAAAAGAGGTACACGAACATGAAATGGACCC
GAAGGGTCTGCAAGCCACTTGAAGCCAACGACAGATAGTCTAGGCCACAC
CGCTCGCCTCTACACGCTATGCGAGGCAACCCTAGATTGGAAAAAGAATT
AAAGAAAGAGAAAGAAAAAGACAAAAGAAAAAGAAGAGAGCAGATGGAGA
ATCGGGAAAGAGAAGGAGTAAGACACGAGACGGAGAAAGACACACGCCGT
AGCGACAAACAACAAACAAACATGACAGAACAAAACAACACAAAACACAA
CACAGCACAAAGCGGGCCACCCGAGCCAGCAAATGGAGGTCATCGCTCGC
GGGGGGTTGGTGCAATGGTGCAGTGCCGGGGGGGGGGG

protein sequence of EsuBft1006_2a-0001

>EsuBft1006_2 ID=EsuBft1006_2|Name=EsuBft1006_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=433bp
MSSTTFEERKSVTLAACFNDKRCHRRLIGHRARTFDFQFHPTEDAAISAS
EDGTARVWDLSSGRCAKSLEGHNKKHEVLRACWAPPGAANDSVSVATGSA
DGIVRLWGIRHGDGRDGKSGLDRYQSLTVVGQLRHRNEAKGLDGQVYSCH
FIPAPSDGAPPSSAAAMCLLTASDSSVHLWDVETRKRVSSRALSKVGAHS
IGGERNPDDLAFVFDAKPRPGSGSSVLAVALSDGTVRVGDVLQEGEKAAV
LRGVTDTHLTSLAWSDDGTVLASCGGNGTITVWDTRTWTVRSVLWGHSRP
VYGAAFYPCAGNGGGGAAAAAAAAAATSGQDCPPQLLLSWSSDETVCAWD
TGRATGDATAPLATLSVDKGFPVYSCSVSADGRRFALAGGGGDEKSAGFL
GVPIKLVDLSDEARAKDGKDSCADNGSNKPAQG

mRNA from alignment at Scaffold_472:108459..112110+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1006_2a-0001 ID=EsuBft1006_2a-0001|Name=EsuBft1006_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3652bp|location=Sequence derived from alignment at Scaffold_472:108459..112110+ (Ectocarpus subulatus male Bft15b)
CTCAGACACCCCAGCGGATACTACAAGCAGTAGAACAAACGATGTCTTCG
ACCACCTTCGAGGAACGTAAGAGTGTCACTCTGGCGGCCTGCTTCAACGA
CAAGCGTTGCCATCGGCGCCTGATCGGCCATCGAGCTCGCACGTTTGATT
TTCAGGTAAAATTCGAATTTCCTCTTCACGGACGGTACATGTAGACTACT
GCTGTACACGCACATGCAACGGACCCTTAGGTATTCGACTAAGCCGGCAG
AACTGCATTGCCGCGGCTTGCAGTACCTAGCGATGACATCTTTGTGACTA
TTTTTTGCCGTTCAGAGTTCATCCGAGATCGAACCGATGACTGTATGCAA
ATGGAATTTAAATATTTTGCAGTTGCGCCGCACGGATAAACCACGCTCGG
GTGGTACAAGCAGTAATTACACAGAGCATGCAGCGACAGACCACGTGTAC
ACGATCAATACAACCAATTTTCCACAGTGTAGTAATTCGTATCATTTGTA
CCTGTATCATGTACTACATGCGCCGGTCGCCCCGTCGTGGTCTCGTGGGA
AACCTCGAGAACCTTGAAGTATTGTTCTTGTAGCTGGTTGTGGGAAATCT
CTCTTGATATTACACTTGCCTTATGAAAGAGGAAGGAGTGCTGCTGAACC
CTTCTCGCGTTGAACTCGACGGCAAGTACCGCAGGGAGGAGGTGTTACAA
CATCAAAAATACGAAAGAATGCGAAGACCCCCGCGATATCTACGTTCCTG
CTGTGTGACCCCGGCTGATGCGTCAAGTACGGAACGTGCCCAGCACTGCG
AGCTGAGCACCTCCATTCTGAAGCCCCCCCCCCCCCCTATTTTCGCAAGC
GGGGCGGAGTACCCATACTCGCAAGGAAGGCGCTCGTGTTAAGGAATAAA
CGGTGTATCTTGACATCTCCGAGCACACGGGTAGTCTTCCAAAGCGTTGT
CGCTGAAAGGGCCGAGGCCGACACGCGATGGAGCCGTTTAACAGTCAGTC
TTCGTTCGCACGAGGACGTACCCAAACTCTGGGTCACGAGCAGTTTGTTG
GATACAGCCTGACCGTCATGCCACTATCTGCACAGCTGGCCGTGAAGTAC
GGTGTCGATCTGTTCGGTACGCACTCACCGTGTGCCGTCCCGAGTTTCGT
AGGGATGTTAGGCTTTTTGGTCGAAGGCACCACGGCCAGCTCTAAATCGA
TTACATCTCCGACCCCATGTCTCACCCCAACCCCAATGCAGTTCCACCCA
ACAGAAGACGCCGCTATATCAGCGAGCGAGGACGGGACGGCCCGCGTGTG
GGACCTCAGCAGCGGAAGGTGCGCCAAGTCCCTTGAGGGGCACAACAAAA
AACACGAGGTGTTGCGGGCGTGCTGGGCGCCGCCGGGGGCGGCGAACGAC
TCGGTCTCCGTTGCTACCGGCTCGGCCGACGGCATCGTCCGCCTGTGGGG
CATACGGCATGGCGACGGCAGGGACGGAAAGAGCGGGTTAGACCGATACC
AATCCCTCACGGTCGTGGGGCAGCTGCGGCATCGCAACGAGGCGAAAGGG
CTCGACGGCCAGGTCTACTCTTGCCACTTCATTCCCGCCCCCAGCGACGG
CGCACCGCCATCATCGGCAGCGGCGATGTGTCTGCTCACAGCTAGCGACA
GCAGCGTTCACCTGTGGGACGTCGAGACGCGGAAGCGTGTATCGTCCCGA
GCCCTGTCGAAAGTCGGGGCACATTCCATCGGCGGGGAGCGGAACCCGGA
CGACCTCGCGTTCGTGTTCGATGCCAAGCCTCGCCCGGGGTCGGGGAGCT
CCGTTCTCGCCGTCGCCCTAAGCGACGGCACGGTGAGGGTCGGGGATGTC
CTCCAAGAGGGCGAAAAGGCCGCGGTGCTGCGAGGAGTCACCGACACCCA
TCTCACGAGTTTGGCGTGGTCGGACGATGGGACGGTCTTGGCTTCGTGCG
GGGGAAACGGAACGATTACGGTGTGGGACACGAGAACCTGGACGGTAAGG
TCGGTCTTGTGGGGCCACTCGAGACCGGTGTACGGGGCGGCCTTCTACCC
CTGTGCTGGCAACGGCGGGGGAGGAGCGGCGGCGGCGGCGGCGGCGGCGG
CGGCAACATCGGGACAAGACTGCCCGCCACAGCTCTTGCTGTCGTGGTCT
AGCGACGAGACCGTGTGCGCTTGGGACACAGGAAGAGCCACCGGTGACGC
GACAGCCCCGCTCGCAACCCTTTCAGTCGATAAAGGGTTTCCCGTATACA
GTTGCTCGGTCTCGGCCGATGGCCGGAGGTTTGCCTTGGCGGGAGGAGGC
GGAGATGAGAAGAGCGCCGGCTTCCTCGGCGTTCCCATCAAGCTCGTGGA
TCTGAGCGACGAAGCGAGAGCGAAAGACGGGAAAGACAGTTGTGCCGACA
ATGGGAGCAATAAACCAGCACAGGGATGACTGTTACTGCTGTGCATGTGA
TATGCTGCGGTCGTTCGATCTTAGCCTATGTTAGTGTATTTACTATCGGG
GGGATTTTCTCATGGTCTGAGTGTGCCGTGACTCGGGCGAAGTATTAGAA
CCTAAGTGGGGAATGTATCTGGTAGAGATAACAATAGCGAGCGGGAATAC
ATCGGTGGTACTCATCGGCAGTCTTTTTGGTGCTGTGCTTCAAGAGGGCG
TCTCCGCTCGTCTCCTCTGTTTTATCCATCAAAAGCAAAGTAGTACTTTT
CATGCCTACCAGCTAACCTGAGGAATTAAAACAACATTTTTTTCGTCGAA
GAATTGACGAGGACAAGCCTTCCTTACCGAGCGTGGTAAGATACTGGTTC
GTGAGTATGTTGTGCAGGCTTTTGCGCATGACCCGCACGCCACAAGCTGA
AGCGCAAGTCGTGCATCGGGACATGTACGCCTCGAAAATGGCGTCCGTAC
TTCAGAGCGTAAGGGCAAACGCACAGTGGGGTCATCGCGGTGGTTCGTGC
GTATGTTGTGCAGGCTTTCGCGCATGACCCGCACGCCACAACCTGAAGCG
CAAGGCGTGCATGGGTAAACGTACGCCTCAAAATGGCGTCGTAGTTCAGA
GCGTAATGGCAAACAGTAGGCTCATCGCGGTCGAGATTGCATAAGAGCAG
TTCTGATGCTGAAAAATGAAAAGCCGCTCCCGATCGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTCTTCACATTAAAAACCGTTCC
GTTCTCTCTGCCCACTTGCTCTGTCCGTACTAGTCTAACAATTGACGGGG
TCGATTCCCGTGGTCACAGGTTAGCTTACCCAAAAAAAGAGGTACACGAA
CATGAAATGGACCCGAAGGGTCTGCAAGCCACTTGAAGCCAACGACAGAT
AGTCTAGGCCACACCGCTCGCCTCTACACGCTATGCGAGGCAACCCTAGA
TTGGAAAAAGAATTAAAGAAAGAGAAAGAAAAAGACAAAAGAAAAAGAAG
AGAGCAGATGGAGAATCGGGAAAGAGAAGGAGTAAGACACGAGACGGAGA
AAGACACACGCCGTAGCGACAAACAACAAACAAACATGACAGAACAAAAC
AACACAAAACACAACACAGCACAAAGCGGGCCACCCGAGCCAGCAAATGG
AGGTCATCGCTCGCGGGGGGTTGGTGCAATGGTGCAGTGCCGGGGGGGGG
GG

Coding sequence (CDS) from alignment at Scaffold_472:108459..112110+

>EsuBft1006_2a-0001 ID=EsuBft1006_2a-0001|Name=EsuBft1006_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1302bp|location=Sequence derived from alignment at Scaffold_472:108459..112110+ (Ectocarpus subulatus male Bft15b)
ATGTCTTCGACCACCTTCGAGGAACGTAAGAGTGTCACTCTGGCGGCCTG
CTTCAACGACAAGCGTTGCCATCGGCGCCTGATCGGCCATCGAGCTCGCA
CGTTTGATTTTCAGTTCCACCCAACAGAAGACGCCGCTATATCAGCGAGC
GAGGACGGGACGGCCCGCGTGTGGGACCTCAGCAGCGGAAGGTGCGCCAA
GTCCCTTGAGGGGCACAACAAAAAACACGAGGTGTTGCGGGCGTGCTGGG
CGCCGCCGGGGGCGGCGAACGACTCGGTCTCCGTTGCTACCGGCTCGGCC
GACGGCATCGTCCGCCTGTGGGGCATACGGCATGGCGACGGCAGGGACGG
AAAGAGCGGGTTAGACCGATACCAATCCCTCACGGTCGTGGGGCAGCTGC
GGCATCGCAACGAGGCGAAAGGGCTCGACGGCCAGGTCTACTCTTGCCAC
TTCATTCCCGCCCCCAGCGACGGCGCACCGCCATCATCGGCAGCGGCGAT
GTGTCTGCTCACAGCTAGCGACAGCAGCGTTCACCTGTGGGACGTCGAGA
CGCGGAAGCGTGTATCGTCCCGAGCCCTGTCGAAAGTCGGGGCACATTCC
ATCGGCGGGGAGCGGAACCCGGACGACCTCGCGTTCGTGTTCGATGCCAA
GCCTCGCCCGGGGTCGGGGAGCTCCGTTCTCGCCGTCGCCCTAAGCGACG
GCACGGTGAGGGTCGGGGATGTCCTCCAAGAGGGCGAAAAGGCCGCGGTG
CTGCGAGGAGTCACCGACACCCATCTCACGAGTTTGGCGTGGTCGGACGA
TGGGACGGTCTTGGCTTCGTGCGGGGGAAACGGAACGATTACGGTGTGGG
ACACGAGAACCTGGACGGTAAGGTCGGTCTTGTGGGGCCACTCGAGACCG
GTGTACGGGGCGGCCTTCTACCCCTGTGCTGGCAACGGCGGGGGAGGAGC
GGCGGCGGCGGCGGCGGCGGCGGCGGCAACATCGGGACAAGACTGCCCGC
CACAGCTCTTGCTGTCGTGGTCTAGCGACGAGACCGTGTGCGCTTGGGAC
ACAGGAAGAGCCACCGGTGACGCGACAGCCCCGCTCGCAACCCTTTCAGT
CGATAAAGGGTTTCCCGTATACAGTTGCTCGGTCTCGGCCGATGGCCGGA
GGTTTGCCTTGGCGGGAGGAGGCGGAGATGAGAAGAGCGCCGGCTTCCTC
GGCGTTCCCATCAAGCTCGTGGATCTGAGCGACGAAGCGAGAGCGAAAGA
CGGGAAAGACAGTTGTGCCGACAATGGGAGCAATAAACCAGCACAGGGAT
GA