EsuBft1006_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1006_2a-0001
Unique NameEsuBft1006_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_472contigScaffold_472:108459..112110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FSW0
ProteomeIdEsuBft1006_2
Protein domainsIPR017986
Protein domainsIPR015943
Protein domainsIPR020472
Protein domainsIPR019775
Protein domainsPTHR22847
Protein domainsIPR001680
Ownerapollo_admin@sb-roscoff.fr
Noteuncharacterized wd repeat-containing protein alr2800 os:nostoc (strain pcc 7120 utex 2576) gn:a [Automatic annotation]
Nb exon2
Max annot lvl2759|Eukaryota
Length2388
Hectar predicted targeting categoryother localisation
Evalue9.11e-298
EggNOG OGsCOG2319@1|root,KOG0263@2759|Eukaryota
Ec32 ortholog descriptionWD40/YVTN repeat-like-containing domain
Ec32 orthologEc-27_006570.1
Date last modified2016-06-13
Date creation2016-06-13
KEGG koko:K01265,ko:K11797
EC3.4.11.18
Descriptiontranscription initiation from RNA polymerase II promoter
COG categoryQ
BRITEko00000,ko01000,ko01002,ko04121
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0005515
GO0005856
GO0050896
GO0097159
GO1901363
GO0006351
GO0008152
GO0043234
GO0044446
GO0016740
GO0050794
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1006_2aEsuBft1006_2aEctocarpus subulatus male Bft15bgeneScaffold_472 108459..112110 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1006_2a-0001EsuBft1006_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_472 108500..110887 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1006_2a-0001-exonagat-exon-51615Ectocarpus subulatus male Bft15bexonScaffold_472 108459..108613 +
EsuBft1006_2a-0001-exonagat-exon-51614Ectocarpus subulatus male Bft15bexonScaffold_472 109700..111243 +
EsuBft1006_2a-0001-exonEsuBft1006_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_472 111422..112110 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1006_2a-0001-exonagat-five_prime_utr-26Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_472 108459..108499 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1006_2a-0001-cdsEsuBft1006_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_472 108500..108613 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1006_2a-0001-exonagat-three_prime_utr-48Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_472 110888..111243 +
EsuBft1006_2a-0001-exonagat-three_prime_utr-49Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_472 111422..112110 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1006_2a-0001 ID=EsuBft1006_2a-0001|Name=EsuBft1006_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2388bp|location=Sequence derived from alignment at Scaffold_472:108459..112110+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTCAGACACCCCAGCGGATACTACAAGCAGTAGAACAAACGATGTCTTCG
ACCACCTTCGAGGAACGTAAGAGTGTCACTCTGGCGGCCTGCTTCAACGA
CAAGCGTTGCCATCGGCGCCTGATCGGCCATCGAGCTCGCACGTTTGATT
TTCAGTTCCACCCAACAGAAGACGCCGCTATATCAGCGAGCGAGGACGGG
ACGGCCCGCGTGTGGGACCTCAGCAGCGGAAGGTGCGCCAAGTCCCTTGA
GGGGCACAACAAAAAACACGAGGTGTTGCGGGCGTGCTGGGCGCCGCCGG
GGGCGGCGAACGACTCGGTCTCCGTTGCTACCGGCTCGGCCGACGGCATC
GTCCGCCTGTGGGGCATACGGCATGGCGACGGCAGGGACGGAAAGAGCGG
GTTAGACCGATACCAATCCCTCACGGTCGTGGGGCAGCTGCGGCATCGCA
ACGAGGCGAAAGGGCTCGACGGCCAGGTCTACTCTTGCCACTTCATTCCC
GCCCCCAGCGACGGCGCACCGCCATCATCGGCAGCGGCGATGTGTCTGCT
CACAGCTAGCGACAGCAGCGTTCACCTGTGGGACGTCGAGACGCGGAAGC
GTGTATCGTCCCGAGCCCTGTCGAAAGTCGGGGCACATTCCATCGGCGGG
GAGCGGAACCCGGACGACCTCGCGTTCGTGTTCGATGCCAAGCCTCGCCC
GGGGTCGGGGAGCTCCGTTCTCGCCGTCGCCCTAAGCGACGGCACGGTGA
GGGTCGGGGATGTCCTCCAAGAGGGCGAAAAGGCCGCGGTGCTGCGAGGA
GTCACCGACACCCATCTCACGAGTTTGGCGTGGTCGGACGATGGGACGGT
CTTGGCTTCGTGCGGGGGAAACGGAACGATTACGGTGTGGGACACGAGAA
CCTGGACGGTAAGGTCGGTCTTGTGGGGCCACTCGAGACCGGTGTACGGG
GCGGCCTTCTACCCCTGTGCTGGCAACGGCGGGGGAGGAGCGGCGGCGGC
GGCGGCGGCGGCGGCGGCAACATCGGGACAAGACTGCCCGCCACAGCTCT
TGCTGTCGTGGTCTAGCGACGAGACCGTGTGCGCTTGGGACACAGGAAGA
GCCACCGGTGACGCGACAGCCCCGCTCGCAACCCTTTCAGTCGATAAAGG
GTTTCCCGTATACAGTTGCTCGGTCTCGGCCGATGGCCGGAGGTTTGCCT
TGGCGGGAGGAGGCGGAGATGAGAAGAGCGCCGGCTTCCTCGGCGTTCCC
ATCAAGCTCGTGGATCTGAGCGACGAAGCGAGAGCGAAAGACGGGAAAGA
CAGTTGTGCCGACAATGGGAGCAATAAACCAGCACAGGGATGACTGTTAC
TGCTGTGCATGTGATATGCTGCGGTCGTTCGATCTTAGCCTATGTTAGTG
TATTTACTATCGGGGGGATTTTCTCATGGTCTGAGTGTGCCGTGACTCGG
GCGAAGTATTAGAACCTAAGTGGGGAATGTATCTGGTAGAGATAACAATA
GCGAGCGGGAATACATCGGTGGTACTCATCGGCAGTCTTTTTGGTGCTGT
GCTTCAAGAGGGCGTCTCCGCTCGTCTCCTCTGTTTTATCCATCAAAAGC
AAAGTAGTACTTTTCATGCCTACCAGCTAACCTGAGGAATTAAAACAACA
TTTTTTTCGTCGAAGAATTGACGAGGACAAGCCTTCCTTACCGAGCGTGG
CTTTCGCGCATGACCCGCACGCCACAACCTGAAGCGCAAGGCGTGCATGG
GTAAACGTACGCCTCAAAATGGCGTCGTAGTTCAGAGCGTAATGGCAAAC
AGTAGGCTCATCGCGGTCGAGATTGCATAAGAGCAGTTCTGATGCTGAAA
AATGAAAAGCCGCTCCCGATCGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTCTTCACATTAAAAACCGTTCCGTTCTCTCTGCCCA
CTTGCTCTGTCCGTACTAGTCTAACAATTGACGGGGTCGATTCCCGTGGT
CACAGGTTAGCTTACCCAAAAAAAGAGGTACACGAACATGAAATGGACCC
GAAGGGTCTGCAAGCCACTTGAAGCCAACGACAGATAGTCTAGGCCACAC
CGCTCGCCTCTACACGCTATGCGAGGCAACCCTAGATTGGAAAAAGAATT
AAAGAAAGAGAAAGAAAAAGACAAAAGAAAAAGAAGAGAGCAGATGGAGA
ATCGGGAAAGAGAAGGAGTAAGACACGAGACGGAGAAAGACACACGCCGT
AGCGACAAACAACAAACAAACATGACAGAACAAAACAACACAAAACACAA
CACAGCACAAAGCGGGCCACCCGAGCCAGCAAATGGAGGTCATCGCTCGC
GGGGGGTTGGTGCAATGGTGCAGTGCCGGGGGGGGGGG
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protein sequence of EsuBft1006_2a-0001

>EsuBft1006_2 ID=EsuBft1006_2|Name=EsuBft1006_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=433bp
MSSTTFEERKSVTLAACFNDKRCHRRLIGHRARTFDFQFHPTEDAAISAS
EDGTARVWDLSSGRCAKSLEGHNKKHEVLRACWAPPGAANDSVSVATGSA
DGIVRLWGIRHGDGRDGKSGLDRYQSLTVVGQLRHRNEAKGLDGQVYSCH
FIPAPSDGAPPSSAAAMCLLTASDSSVHLWDVETRKRVSSRALSKVGAHS
IGGERNPDDLAFVFDAKPRPGSGSSVLAVALSDGTVRVGDVLQEGEKAAV
LRGVTDTHLTSLAWSDDGTVLASCGGNGTITVWDTRTWTVRSVLWGHSRP
VYGAAFYPCAGNGGGGAAAAAAAAAATSGQDCPPQLLLSWSSDETVCAWD
TGRATGDATAPLATLSVDKGFPVYSCSVSADGRRFALAGGGGDEKSAGFL
GVPIKLVDLSDEARAKDGKDSCADNGSNKPAQG
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mRNA from alignment at Scaffold_472:108459..112110+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1006_2a-0001 ID=EsuBft1006_2a-0001|Name=EsuBft1006_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3652bp|location=Sequence derived from alignment at Scaffold_472:108459..112110+ (Ectocarpus subulatus male Bft15b)
CTCAGACACCCCAGCGGATACTACAAGCAGTAGAACAAACGATGTCTTCG
ACCACCTTCGAGGAACGTAAGAGTGTCACTCTGGCGGCCTGCTTCAACGA
CAAGCGTTGCCATCGGCGCCTGATCGGCCATCGAGCTCGCACGTTTGATT
TTCAGGTAAAATTCGAATTTCCTCTTCACGGACGGTACATGTAGACTACT
GCTGTACACGCACATGCAACGGACCCTTAGGTATTCGACTAAGCCGGCAG
AACTGCATTGCCGCGGCTTGCAGTACCTAGCGATGACATCTTTGTGACTA
TTTTTTGCCGTTCAGAGTTCATCCGAGATCGAACCGATGACTGTATGCAA
ATGGAATTTAAATATTTTGCAGTTGCGCCGCACGGATAAACCACGCTCGG
GTGGTACAAGCAGTAATTACACAGAGCATGCAGCGACAGACCACGTGTAC
ACGATCAATACAACCAATTTTCCACAGTGTAGTAATTCGTATCATTTGTA
CCTGTATCATGTACTACATGCGCCGGTCGCCCCGTCGTGGTCTCGTGGGA
AACCTCGAGAACCTTGAAGTATTGTTCTTGTAGCTGGTTGTGGGAAATCT
CTCTTGATATTACACTTGCCTTATGAAAGAGGAAGGAGTGCTGCTGAACC
CTTCTCGCGTTGAACTCGACGGCAAGTACCGCAGGGAGGAGGTGTTACAA
CATCAAAAATACGAAAGAATGCGAAGACCCCCGCGATATCTACGTTCCTG
CTGTGTGACCCCGGCTGATGCGTCAAGTACGGAACGTGCCCAGCACTGCG
AGCTGAGCACCTCCATTCTGAAGCCCCCCCCCCCCCCTATTTTCGCAAGC
GGGGCGGAGTACCCATACTCGCAAGGAAGGCGCTCGTGTTAAGGAATAAA
CGGTGTATCTTGACATCTCCGAGCACACGGGTAGTCTTCCAAAGCGTTGT
CGCTGAAAGGGCCGAGGCCGACACGCGATGGAGCCGTTTAACAGTCAGTC
TTCGTTCGCACGAGGACGTACCCAAACTCTGGGTCACGAGCAGTTTGTTG
GATACAGCCTGACCGTCATGCCACTATCTGCACAGCTGGCCGTGAAGTAC
GGTGTCGATCTGTTCGGTACGCACTCACCGTGTGCCGTCCCGAGTTTCGT
AGGGATGTTAGGCTTTTTGGTCGAAGGCACCACGGCCAGCTCTAAATCGA
TTACATCTCCGACCCCATGTCTCACCCCAACCCCAATGCAGTTCCACCCA
ACAGAAGACGCCGCTATATCAGCGAGCGAGGACGGGACGGCCCGCGTGTG
GGACCTCAGCAGCGGAAGGTGCGCCAAGTCCCTTGAGGGGCACAACAAAA
AACACGAGGTGTTGCGGGCGTGCTGGGCGCCGCCGGGGGCGGCGAACGAC
TCGGTCTCCGTTGCTACCGGCTCGGCCGACGGCATCGTCCGCCTGTGGGG
CATACGGCATGGCGACGGCAGGGACGGAAAGAGCGGGTTAGACCGATACC
AATCCCTCACGGTCGTGGGGCAGCTGCGGCATCGCAACGAGGCGAAAGGG
CTCGACGGCCAGGTCTACTCTTGCCACTTCATTCCCGCCCCCAGCGACGG
CGCACCGCCATCATCGGCAGCGGCGATGTGTCTGCTCACAGCTAGCGACA
GCAGCGTTCACCTGTGGGACGTCGAGACGCGGAAGCGTGTATCGTCCCGA
GCCCTGTCGAAAGTCGGGGCACATTCCATCGGCGGGGAGCGGAACCCGGA
CGACCTCGCGTTCGTGTTCGATGCCAAGCCTCGCCCGGGGTCGGGGAGCT
CCGTTCTCGCCGTCGCCCTAAGCGACGGCACGGTGAGGGTCGGGGATGTC
CTCCAAGAGGGCGAAAAGGCCGCGGTGCTGCGAGGAGTCACCGACACCCA
TCTCACGAGTTTGGCGTGGTCGGACGATGGGACGGTCTTGGCTTCGTGCG
GGGGAAACGGAACGATTACGGTGTGGGACACGAGAACCTGGACGGTAAGG
TCGGTCTTGTGGGGCCACTCGAGACCGGTGTACGGGGCGGCCTTCTACCC
CTGTGCTGGCAACGGCGGGGGAGGAGCGGCGGCGGCGGCGGCGGCGGCGG
CGGCAACATCGGGACAAGACTGCCCGCCACAGCTCTTGCTGTCGTGGTCT
AGCGACGAGACCGTGTGCGCTTGGGACACAGGAAGAGCCACCGGTGACGC
GACAGCCCCGCTCGCAACCCTTTCAGTCGATAAAGGGTTTCCCGTATACA
GTTGCTCGGTCTCGGCCGATGGCCGGAGGTTTGCCTTGGCGGGAGGAGGC
GGAGATGAGAAGAGCGCCGGCTTCCTCGGCGTTCCCATCAAGCTCGTGGA
TCTGAGCGACGAAGCGAGAGCGAAAGACGGGAAAGACAGTTGTGCCGACA
ATGGGAGCAATAAACCAGCACAGGGATGACTGTTACTGCTGTGCATGTGA
TATGCTGCGGTCGTTCGATCTTAGCCTATGTTAGTGTATTTACTATCGGG
GGGATTTTCTCATGGTCTGAGTGTGCCGTGACTCGGGCGAAGTATTAGAA
CCTAAGTGGGGAATGTATCTGGTAGAGATAACAATAGCGAGCGGGAATAC
ATCGGTGGTACTCATCGGCAGTCTTTTTGGTGCTGTGCTTCAAGAGGGCG
TCTCCGCTCGTCTCCTCTGTTTTATCCATCAAAAGCAAAGTAGTACTTTT
CATGCCTACCAGCTAACCTGAGGAATTAAAACAACATTTTTTTCGTCGAA
GAATTGACGAGGACAAGCCTTCCTTACCGAGCGTGGTAAGATACTGGTTC
GTGAGTATGTTGTGCAGGCTTTTGCGCATGACCCGCACGCCACAAGCTGA
AGCGCAAGTCGTGCATCGGGACATGTACGCCTCGAAAATGGCGTCCGTAC
TTCAGAGCGTAAGGGCAAACGCACAGTGGGGTCATCGCGGTGGTTCGTGC
GTATGTTGTGCAGGCTTTCGCGCATGACCCGCACGCCACAACCTGAAGCG
CAAGGCGTGCATGGGTAAACGTACGCCTCAAAATGGCGTCGTAGTTCAGA
GCGTAATGGCAAACAGTAGGCTCATCGCGGTCGAGATTGCATAAGAGCAG
TTCTGATGCTGAAAAATGAAAAGCCGCTCCCGATCGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTCTTCACATTAAAAACCGTTCC
GTTCTCTCTGCCCACTTGCTCTGTCCGTACTAGTCTAACAATTGACGGGG
TCGATTCCCGTGGTCACAGGTTAGCTTACCCAAAAAAAGAGGTACACGAA
CATGAAATGGACCCGAAGGGTCTGCAAGCCACTTGAAGCCAACGACAGAT
AGTCTAGGCCACACCGCTCGCCTCTACACGCTATGCGAGGCAACCCTAGA
TTGGAAAAAGAATTAAAGAAAGAGAAAGAAAAAGACAAAAGAAAAAGAAG
AGAGCAGATGGAGAATCGGGAAAGAGAAGGAGTAAGACACGAGACGGAGA
AAGACACACGCCGTAGCGACAAACAACAAACAAACATGACAGAACAAAAC
AACACAAAACACAACACAGCACAAAGCGGGCCACCCGAGCCAGCAAATGG
AGGTCATCGCTCGCGGGGGGTTGGTGCAATGGTGCAGTGCCGGGGGGGGG
GG
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Coding sequence (CDS) from alignment at Scaffold_472:108459..112110+

>EsuBft1006_2a-0001 ID=EsuBft1006_2a-0001|Name=EsuBft1006_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1302bp|location=Sequence derived from alignment at Scaffold_472:108459..112110+ (Ectocarpus subulatus male Bft15b)
ATGTCTTCGACCACCTTCGAGGAACGTAAGAGTGTCACTCTGGCGGCCTG
CTTCAACGACAAGCGTTGCCATCGGCGCCTGATCGGCCATCGAGCTCGCA
CGTTTGATTTTCAGTTCCACCCAACAGAAGACGCCGCTATATCAGCGAGC
GAGGACGGGACGGCCCGCGTGTGGGACCTCAGCAGCGGAAGGTGCGCCAA
GTCCCTTGAGGGGCACAACAAAAAACACGAGGTGTTGCGGGCGTGCTGGG
CGCCGCCGGGGGCGGCGAACGACTCGGTCTCCGTTGCTACCGGCTCGGCC
GACGGCATCGTCCGCCTGTGGGGCATACGGCATGGCGACGGCAGGGACGG
AAAGAGCGGGTTAGACCGATACCAATCCCTCACGGTCGTGGGGCAGCTGC
GGCATCGCAACGAGGCGAAAGGGCTCGACGGCCAGGTCTACTCTTGCCAC
TTCATTCCCGCCCCCAGCGACGGCGCACCGCCATCATCGGCAGCGGCGAT
GTGTCTGCTCACAGCTAGCGACAGCAGCGTTCACCTGTGGGACGTCGAGA
CGCGGAAGCGTGTATCGTCCCGAGCCCTGTCGAAAGTCGGGGCACATTCC
ATCGGCGGGGAGCGGAACCCGGACGACCTCGCGTTCGTGTTCGATGCCAA
GCCTCGCCCGGGGTCGGGGAGCTCCGTTCTCGCCGTCGCCCTAAGCGACG
GCACGGTGAGGGTCGGGGATGTCCTCCAAGAGGGCGAAAAGGCCGCGGTG
CTGCGAGGAGTCACCGACACCCATCTCACGAGTTTGGCGTGGTCGGACGA
TGGGACGGTCTTGGCTTCGTGCGGGGGAAACGGAACGATTACGGTGTGGG
ACACGAGAACCTGGACGGTAAGGTCGGTCTTGTGGGGCCACTCGAGACCG
GTGTACGGGGCGGCCTTCTACCCCTGTGCTGGCAACGGCGGGGGAGGAGC
GGCGGCGGCGGCGGCGGCGGCGGCGGCAACATCGGGACAAGACTGCCCGC
CACAGCTCTTGCTGTCGTGGTCTAGCGACGAGACCGTGTGCGCTTGGGAC
ACAGGAAGAGCCACCGGTGACGCGACAGCCCCGCTCGCAACCCTTTCAGT
CGATAAAGGGTTTCCCGTATACAGTTGCTCGGTCTCGGCCGATGGCCGGA
GGTTTGCCTTGGCGGGAGGAGGCGGAGATGAGAAGAGCGCCGGCTTCCTC
GGCGTTCCCATCAAGCTCGTGGATCTGAGCGACGAAGCGAGAGCGAAAGA
CGGGAAAGACAGTTGTGCCGACAATGGGAGCAATAAACCAGCACAGGGAT
GA
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