EsuBft1002_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1002_10a	EsuBft1002_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_228 905..4511 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1002_10a-0001	EsuBft1002_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_228 905..1091 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1002_10a-0001-exon	EsuBft1002_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_228 905..907 +
EsuBft1002_10a-0001-exon	agat-exon-62800	Ectocarpus subulatus male Bft15b	exon	Scaffold_228 1017..1268 +
EsuBft1002_10a-0001-exon	agat-exon-62799	Ectocarpus subulatus male Bft15b	exon	Scaffold_228 3438..4511 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1002_10a-0001-cds	EsuBft1002_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_228 905..907 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1002_10a-0001-exon	agat-three_prime_utr-10	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_228 1092..1268 +
EsuBft1002_10a-0001-exon	agat-three_prime_utr-11	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_228 3438..4511 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_228:905..4511+
coding sequence from alignment at Scaffold_228:905..4511+

spliced messenger RNA

>EsuBft1002_10a-0001 ID=EsuBft1002_10a-0001|Name=EsuBft1002_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1329bp|location=Sequence derived from alignment at Scaffold_228:905..4511+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGTTTCTGGAAGATGCTTCGTTTCAGTTCTTCCACAAAGCGGGTGG
GCCGATGACGTCCAGACTTTCGGAATAGCGTTGCATGTTCTCGACTCCGC
CACGTGTATTATTCAGCAGGCGGTGTTGATGTACTCAAGAAAAGGGAGAG
CAGCAAAGGAGAGAGACGGAGAGAGAGGCGGGAAGGGAAGGCAGGTAGAG
CAGAGGCATCAAAGGATGGTGCAACAGGGTAGCGGAACGTTCACTCGGCG
CACTGGTATGAATCTTTTGGAAATGGCGTTGGCAACGGTGCTGAAGTGGC
TATCCTGTAATCTTGGACACTTCTGGAATCAAACAACGCGGAAAACGCCA
AGGATCGCCGGAACGTTCGTGGATACCGCTGTTGTTGCCAGCCGAGACTT
TAAGGGCTCAAGAAACAATCGAGATCGGGAAACTGTTTCAAAGAATCTGG
GGCCATCAAGCGTTCGGACACGAGCAGTTAGCTCCTGGAGGTACCGTAAC
AACCTTCATATTTTGTTCGGAGAGAGCATTTCGCAGGTGATGTATTGTCT
TCGTCTCATCTGTTCTGGCTCCAGTCTACACACCTTTCGGTGCACATAAT
TCCGACGTGTCAGTTGGGGTCACACAAGAGGAAGGATACACGGGAGTTCC
TCCATTTTTTGTTTTAGTGCCTCAACTTTCTCCCCGCGGTGCTTGTCATA
GTTTGGTCGCGACAAGGGGTCAACTATCCCTTTCCCTCGTCTCGACCATG
AAGCCGAAGTGTATGATATGATGTGACTGCGCAGGTAGGATCCCGTGCCC
CCTCTTGTTTCGCCTATGTAGTACGGAACAACGGCAGTGGAGCAGATTCC
CACTGCACGGTAGTAGTTGCGCCAGGGCAGTGCTGGTGTTGTTGGGTCTT
GCTCTGTGCAGTCCATGATAAACACGAACGTCACTCTGCGCAATGATGTG
GCCGTGTGTGCACAACGCCTAGCGTTCCCCGGCTGATAACACGCGAGCGC
CGAAGCTTACACCTAGCACCTAGGTACACCTAGCACCTAGGTACACGGCG
GTTGGACTTGTGTTTTCTATTTTCCTGGGGACCGTTATGCCGAATGTGGT
CGCAGATTCATGCAGGAGCCGCGGACGCAGCATGGCACAGCAGTAGTAAC
ATCAGGCACTTTTTTCCGTTGACCCTCGGGTTTTTTGGCGGCACTTGCTT
CGATTGCCTGTGTACCACACCTCGCCGTAGATGGTTGTTCTATAGAGCTC
CCCATATATTCCCGATGGACGCAAGGGTATGCCTGCCGTCTGTTTTGAGC
GTGGTCCGATACGCTTAGTTGCGAGAGAC

protein sequence of EsuBft1002_10a-0001

>EsuBft1002_10 ID=EsuBft1002_10|Name=EsuBft1002_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=25bp
MMFLEDASFQFFHKAGGPMTSRLSE

mRNA from alignment at Scaffold_228:905..4511+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1002_10a-0001 ID=EsuBft1002_10a-0001|Name=EsuBft1002_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3607bp|location=Sequence derived from alignment at Scaffold_228:905..4511+ (Ectocarpus subulatus male Bft15b)
ATGGTACATGGTTGTATTGCAAGGTCGAACACCGCTGGCACGACGGTTGG
CAGGCCCTACCGTGCACAAAAGTTGAATGGGAAAGTTTCTGAAGGGTTCG
GGAATGTTCTAGATGTTTCTGGAAGATGCTTCGTTTCAGTTCTTCCACAA
AGCGGGTGGGCCGATGACGTCCAGACTTTCGGAATAGCGTTGCATGTTCT
CGACTCCGCCACGTGTATTATTCAGCAGGCGGTGTTGATGTACTCAAGAA
AAGGGAGAGCAGCAAAGGAGAGAGACGGAGAGAGAGGCGGGAAGGGAAGG
CAGGTAGAGCAGAGGCATCAAAGGATGGTGCAACAGGGTAGCGGAACGTT
CACTCGGCGCACTGGTGAGTGATGAGAAGCGGACAGTCAGTATATCGTCA
CCGGTTGCAACGCATCCCGCCGGACTGCTGCTGTGCTGCATTCAGATCGC
AAGAGCAGAGGTTTGGCTTCGGTTCCGTTTGCGCAAGAAAGTAGCAGTAG
CAGTAGCAGGTAAAAAATAGCAGCAGCCGTGTACCCGCTAAATGTTGCCA
CGTACGTAGTGTAGAGTGCATACGTTCGGGTGCACGGGCGACTCTACAGG
AGAGGAATCATATTGCAATAGACTATGCGAAGGATGTACACAAACGCAAA
GCTGGCAACCGCCAGGTTGATTGTGATGCTGCTCTGTGATTACTGCGGCA
CAGGGTGGCGTTGGGAGTTGGGTTCAGTTCCCTTTTTTCTCAATGTTCTC
TAGACTATTAGGAAACATGGACCGCTATAGTTTTGCATTTGTATTTGTAT
GTTTTCGTGTTTTTCCCACGCATGCTGTTCAGAACCTTTTTTTAAAGTTC
TCGATCTTGGAAAGCAAGCCGGACATACATGTGCAGCGTAGAATATAGCT
GCTGTGGACGCTGCGAGCGGGGCACCGCCCAGAATAGCGGCATTGCGGGG
CATAATAATTGGGAGGATCCCCTGCTTGGGGGCGTGAGGCTTCGTGCTAC
CCACCATGAGTGCCTCTAAGGCCGTCAGTGAGCTGCTGCAACCGTCTGGT
TCTATTCGGTACCTGGTGCAACGTTCCCACCATCTGAGCTCTTCCTGCGC
TGCCGTGCATCACCGCGTGTGTCTGGGTGCGCCAAAAAAGTGTGTCGGTG
GTTTCAGCATCCACATACAGCAGTAAGCAGAATATATGAAGCGGTACCAT
GGTACTAGGGTAAAGGCGCCGAGGATAAATTTCAGAGCGGCACCCGTCGG
GATTATCGCGATCTACGGTAGGTGTATACGCATAACACCATTCACCACAG
AGTAGTCTAGACCATATCTTGTTCCCTTCCTTTTCCGCCCCTGAGGCTGA
TTACACCCCAGTCATGCAAGAACGAAATGACTCCCGAGGTCGTTCCCTGG
AGCAATCGCTCAGCCTCGTCGTTTTTTCAAACTCCGCAAACGTTGAGACC
ACGCGGCGTGTAGCTCTCATCTAGCATGAGACTAGACTATGTTGTCCATA
TGCGTACTACATCCAGCAGCTGAACCGCGGCATATCGCAGAAGTTCTTAT
CTTGCAACACCCCGATTCCCCGCTCGGCTCGTTGTTCGATTGAGTTTCAC
GTTGCCCGTGGGGTAAGGTTGCAAGGAAACAAACACCCGTAGCCCTGCTT
GCGTGGCTTGGACAATGGTTTGCACAGGGAATAGGGAGGGATGTATGCAT
GCATGCATGCATGCGGTTTTGGGTTGTGTGGCGAAACTGTCTACTTTTTT
GTGTCCCGCGTCGCCGGCTGTTTTATTGTGTGACCAACTTCGGCGTCGCG
TCTAACGGACAAAATCGCGAAATGTTCGTTGCCTTTAGATCACGTGTTTT
TTTGTTTCGCTGCTTTTCACCACTGGCCGAGCGAGATATGTTTCACCACC
GGGAACACGTTCAGGAAAAACGTCGGAAAAATCAACTTTTTTTTTTTGTG
GAATGTATCAGAGAGCGATAGCGATATAGGCGCGGACCGTTTCATGCGGG
CGCCACACGGCACTTCATTGTTTCCAGGCCATGTTTCTGCCCTGCCTGAT
GCTTCTGGAGCCTAGTAAGTTTGTGTCATGCTCGTGCGCAGTTGTTCGAA
ATGAATGGGCAGCGGTAATGGCGGGCATGCAGCACTGTTTTTGCCGGATG
TGGCGAACGGCTGTTGTTGTATTTCGTTCGTTCATGTTCCACCCGCTTTT
TCCCGTGCTATCGAGAACTGTTTTTTGGATGGAAGTTTTGGGCAAAGGCA
TGGCGGTCGATACTTGATCATTTCGGACATGGCTTCGCGTACCCTACGTG
CGGACAGGGCTTTCTGTACCCTACGTGCTAGATTGCCGCTCGACTTTGCG
GTCTTTTCACAGCATGGAGTAGACAATACTGTCGCTGCTGCCGCTTCCCG
CTTGACAGTTGTATCTCCATGTCAACATCTGCCCGCAACACACTGCTGTC
GAACGAAGCAACCTGGCTTCGAGTACAACTTCCTTGTGAAGTTATGGACC
GGTTGTTGTGCCGTGAAACCTCGTTATTTCCAGGTATGAATCTTTTGGAA
ATGGCGTTGGCAACGGTGCTGAAGTGGCTATCCTGTAATCTTGGACACTT
CTGGAATCAAACAACGCGGAAAACGCCAAGGATCGCCGGAACGTTCGTGG
ATACCGCTGTTGTTGCCAGCCGAGACTTTAAGGGCTCAAGAAACAATCGA
GATCGGGAAACTGTTTCAAAGAATCTGGGGCCATCAAGCGTTCGGACACG
AGCAGTTAGCTCCTGGAGGTACCGTAACAACCTTCATATTTTGTTCGGAG
AGAGCATTTCGCAGGTGATGTATTGTCTTCGTCTCATCTGTTCTGGCTCC
AGTCTACACACCTTTCGGTGCACATAATTCCGACGTGTCAGTTGGGGTCA
CACAAGAGGAAGGATACACGGGAGTTCCTCCATTTTTTGTTTTAGTGCCT
CAACTTTCTCCCCGCGGTGCTTGTCATAGTTTGGTCGCGACAAGGGGTCA
ACTATCCCTTTCCCTCGTCTCGACCATGAAGCCGAAGTGTATGATATGAT
GTGACTGCGCAGGTAGGATCCCGTGCCCCCTCTTGTTTCGCCTATGTAGT
ACGGAACAACGGCAGTGGAGCAGATTCCCACTGCACGGTAGTAGTTGCGC
CAGGGCAGTGCTGGTGTTGTTGGGTCTTGCTCTGTGCAGTCCATGATAAA
CACGAACGTCACTCTGCGCAATGATGTGGCCGTGTGTGCACAACGCCTAG
CGTTCCCCGGCTGATAACACGCGAGCGCCGAAGCTTACACCTAGCACCTA
GGTACACCTAGCACCTAGGTACACGGCGGTTGGACTTGTGTTTTCTATTT
TCCTGGGGACCGTTATGCCGAATGTGGTCGCAGATTCATGCAGGAGCCGC
GGACGCAGCATGGCACAGCAGTAGTAACATCAGGCACTTTTTTCCGTTGA
CCCTCGGGTTTTTTGGCGGCACTTGCTTCGATTGCCTGTGTACCACACCT
CGCCGTAGATGGTTGTTCTATAGAGCTCCCCATATATTCCCGATGGACGC
AAGGGTATGCCTGCCGTCTGTTTTGAGCGTGGTCCGATACGCTTAGTTGC
GAGAGAC

Coding sequence (CDS) from alignment at Scaffold_228:905..4511+

>EsuBft1002_10a-0001 ID=EsuBft1002_10a-0001|Name=EsuBft1002_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=78bp|location=Sequence derived from alignment at Scaffold_228:905..4511+ (Ectocarpus subulatus male Bft15b)
ATGATGTTTCTGGAAGATGCTTCGTTTCAGTTCTTCCACAAAGCGGGTGG
GCCGATGACGTCCAGACTTTCGGAATAG