EsuBft1002_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1002_10a-0001
Unique NameEsuBft1002_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_228contigScaffold_228:905..4511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1002_10
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length132
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1002_10aEsuBft1002_10aEctocarpus subulatus male Bft15bgeneScaffold_228 905..4511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1002_10a-0001EsuBft1002_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_228 905..1091 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1002_10a-0001-exonEsuBft1002_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_228 905..907 +
EsuBft1002_10a-0001-exonagat-exon-62800Ectocarpus subulatus male Bft15bexonScaffold_228 1017..1268 +
EsuBft1002_10a-0001-exonagat-exon-62799Ectocarpus subulatus male Bft15bexonScaffold_228 3438..4511 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1002_10a-0001-cdsEsuBft1002_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_228 905..907 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1002_10a-0001-exonagat-three_prime_utr-10Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_228 1092..1268 +
EsuBft1002_10a-0001-exonagat-three_prime_utr-11Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_228 3438..4511 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1002_10a-0001 ID=EsuBft1002_10a-0001|Name=EsuBft1002_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1329bp|location=Sequence derived from alignment at Scaffold_228:905..4511+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGTTTCTGGAAGATGCTTCGTTTCAGTTCTTCCACAAAGCGGGTGG
GCCGATGACGTCCAGACTTTCGGAATAGCGTTGCATGTTCTCGACTCCGC
CACGTGTATTATTCAGCAGGCGGTGTTGATGTACTCAAGAAAAGGGAGAG
CAGCAAAGGAGAGAGACGGAGAGAGAGGCGGGAAGGGAAGGCAGGTAGAG
CAGAGGCATCAAAGGATGGTGCAACAGGGTAGCGGAACGTTCACTCGGCG
CACTGGTATGAATCTTTTGGAAATGGCGTTGGCAACGGTGCTGAAGTGGC
TATCCTGTAATCTTGGACACTTCTGGAATCAAACAACGCGGAAAACGCCA
AGGATCGCCGGAACGTTCGTGGATACCGCTGTTGTTGCCAGCCGAGACTT
TAAGGGCTCAAGAAACAATCGAGATCGGGAAACTGTTTCAAAGAATCTGG
GGCCATCAAGCGTTCGGACACGAGCAGTTAGCTCCTGGAGGTACCGTAAC
AACCTTCATATTTTGTTCGGAGAGAGCATTTCGCAGGTGATGTATTGTCT
TCGTCTCATCTGTTCTGGCTCCAGTCTACACACCTTTCGGTGCACATAAT
TCCGACGTGTCAGTTGGGGTCACACAAGAGGAAGGATACACGGGAGTTCC
TCCATTTTTTGTTTTAGTGCCTCAACTTTCTCCCCGCGGTGCTTGTCATA
GTTTGGTCGCGACAAGGGGTCAACTATCCCTTTCCCTCGTCTCGACCATG
AAGCCGAAGTGTATGATATGATGTGACTGCGCAGGTAGGATCCCGTGCCC
CCTCTTGTTTCGCCTATGTAGTACGGAACAACGGCAGTGGAGCAGATTCC
CACTGCACGGTAGTAGTTGCGCCAGGGCAGTGCTGGTGTTGTTGGGTCTT
GCTCTGTGCAGTCCATGATAAACACGAACGTCACTCTGCGCAATGATGTG
GCCGTGTGTGCACAACGCCTAGCGTTCCCCGGCTGATAACACGCGAGCGC
CGAAGCTTACACCTAGCACCTAGGTACACCTAGCACCTAGGTACACGGCG
GTTGGACTTGTGTTTTCTATTTTCCTGGGGACCGTTATGCCGAATGTGGT
CGCAGATTCATGCAGGAGCCGCGGACGCAGCATGGCACAGCAGTAGTAAC
ATCAGGCACTTTTTTCCGTTGACCCTCGGGTTTTTTGGCGGCACTTGCTT
CGATTGCCTGTGTACCACACCTCGCCGTAGATGGTTGTTCTATAGAGCTC
CCCATATATTCCCGATGGACGCAAGGGTATGCCTGCCGTCTGTTTTGAGC
GTGGTCCGATACGCTTAGTTGCGAGAGAC
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protein sequence of EsuBft1002_10a-0001

>EsuBft1002_10 ID=EsuBft1002_10|Name=EsuBft1002_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=25bp
MMFLEDASFQFFHKAGGPMTSRLSE
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mRNA from alignment at Scaffold_228:905..4511+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1002_10a-0001 ID=EsuBft1002_10a-0001|Name=EsuBft1002_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3607bp|location=Sequence derived from alignment at Scaffold_228:905..4511+ (Ectocarpus subulatus male Bft15b)
ATGGTACATGGTTGTATTGCAAGGTCGAACACCGCTGGCACGACGGTTGG
CAGGCCCTACCGTGCACAAAAGTTGAATGGGAAAGTTTCTGAAGGGTTCG
GGAATGTTCTAGATGTTTCTGGAAGATGCTTCGTTTCAGTTCTTCCACAA
AGCGGGTGGGCCGATGACGTCCAGACTTTCGGAATAGCGTTGCATGTTCT
CGACTCCGCCACGTGTATTATTCAGCAGGCGGTGTTGATGTACTCAAGAA
AAGGGAGAGCAGCAAAGGAGAGAGACGGAGAGAGAGGCGGGAAGGGAAGG
CAGGTAGAGCAGAGGCATCAAAGGATGGTGCAACAGGGTAGCGGAACGTT
CACTCGGCGCACTGGTGAGTGATGAGAAGCGGACAGTCAGTATATCGTCA
CCGGTTGCAACGCATCCCGCCGGACTGCTGCTGTGCTGCATTCAGATCGC
AAGAGCAGAGGTTTGGCTTCGGTTCCGTTTGCGCAAGAAAGTAGCAGTAG
CAGTAGCAGGTAAAAAATAGCAGCAGCCGTGTACCCGCTAAATGTTGCCA
CGTACGTAGTGTAGAGTGCATACGTTCGGGTGCACGGGCGACTCTACAGG
AGAGGAATCATATTGCAATAGACTATGCGAAGGATGTACACAAACGCAAA
GCTGGCAACCGCCAGGTTGATTGTGATGCTGCTCTGTGATTACTGCGGCA
CAGGGTGGCGTTGGGAGTTGGGTTCAGTTCCCTTTTTTCTCAATGTTCTC
TAGACTATTAGGAAACATGGACCGCTATAGTTTTGCATTTGTATTTGTAT
GTTTTCGTGTTTTTCCCACGCATGCTGTTCAGAACCTTTTTTTAAAGTTC
TCGATCTTGGAAAGCAAGCCGGACATACATGTGCAGCGTAGAATATAGCT
GCTGTGGACGCTGCGAGCGGGGCACCGCCCAGAATAGCGGCATTGCGGGG
CATAATAATTGGGAGGATCCCCTGCTTGGGGGCGTGAGGCTTCGTGCTAC
CCACCATGAGTGCCTCTAAGGCCGTCAGTGAGCTGCTGCAACCGTCTGGT
TCTATTCGGTACCTGGTGCAACGTTCCCACCATCTGAGCTCTTCCTGCGC
TGCCGTGCATCACCGCGTGTGTCTGGGTGCGCCAAAAAAGTGTGTCGGTG
GTTTCAGCATCCACATACAGCAGTAAGCAGAATATATGAAGCGGTACCAT
GGTACTAGGGTAAAGGCGCCGAGGATAAATTTCAGAGCGGCACCCGTCGG
GATTATCGCGATCTACGGTAGGTGTATACGCATAACACCATTCACCACAG
AGTAGTCTAGACCATATCTTGTTCCCTTCCTTTTCCGCCCCTGAGGCTGA
TTACACCCCAGTCATGCAAGAACGAAATGACTCCCGAGGTCGTTCCCTGG
AGCAATCGCTCAGCCTCGTCGTTTTTTCAAACTCCGCAAACGTTGAGACC
ACGCGGCGTGTAGCTCTCATCTAGCATGAGACTAGACTATGTTGTCCATA
TGCGTACTACATCCAGCAGCTGAACCGCGGCATATCGCAGAAGTTCTTAT
CTTGCAACACCCCGATTCCCCGCTCGGCTCGTTGTTCGATTGAGTTTCAC
GTTGCCCGTGGGGTAAGGTTGCAAGGAAACAAACACCCGTAGCCCTGCTT
GCGTGGCTTGGACAATGGTTTGCACAGGGAATAGGGAGGGATGTATGCAT
GCATGCATGCATGCGGTTTTGGGTTGTGTGGCGAAACTGTCTACTTTTTT
GTGTCCCGCGTCGCCGGCTGTTTTATTGTGTGACCAACTTCGGCGTCGCG
TCTAACGGACAAAATCGCGAAATGTTCGTTGCCTTTAGATCACGTGTTTT
TTTGTTTCGCTGCTTTTCACCACTGGCCGAGCGAGATATGTTTCACCACC
GGGAACACGTTCAGGAAAAACGTCGGAAAAATCAACTTTTTTTTTTTGTG
GAATGTATCAGAGAGCGATAGCGATATAGGCGCGGACCGTTTCATGCGGG
CGCCACACGGCACTTCATTGTTTCCAGGCCATGTTTCTGCCCTGCCTGAT
GCTTCTGGAGCCTAGTAAGTTTGTGTCATGCTCGTGCGCAGTTGTTCGAA
ATGAATGGGCAGCGGTAATGGCGGGCATGCAGCACTGTTTTTGCCGGATG
TGGCGAACGGCTGTTGTTGTATTTCGTTCGTTCATGTTCCACCCGCTTTT
TCCCGTGCTATCGAGAACTGTTTTTTGGATGGAAGTTTTGGGCAAAGGCA
TGGCGGTCGATACTTGATCATTTCGGACATGGCTTCGCGTACCCTACGTG
CGGACAGGGCTTTCTGTACCCTACGTGCTAGATTGCCGCTCGACTTTGCG
GTCTTTTCACAGCATGGAGTAGACAATACTGTCGCTGCTGCCGCTTCCCG
CTTGACAGTTGTATCTCCATGTCAACATCTGCCCGCAACACACTGCTGTC
GAACGAAGCAACCTGGCTTCGAGTACAACTTCCTTGTGAAGTTATGGACC
GGTTGTTGTGCCGTGAAACCTCGTTATTTCCAGGTATGAATCTTTTGGAA
ATGGCGTTGGCAACGGTGCTGAAGTGGCTATCCTGTAATCTTGGACACTT
CTGGAATCAAACAACGCGGAAAACGCCAAGGATCGCCGGAACGTTCGTGG
ATACCGCTGTTGTTGCCAGCCGAGACTTTAAGGGCTCAAGAAACAATCGA
GATCGGGAAACTGTTTCAAAGAATCTGGGGCCATCAAGCGTTCGGACACG
AGCAGTTAGCTCCTGGAGGTACCGTAACAACCTTCATATTTTGTTCGGAG
AGAGCATTTCGCAGGTGATGTATTGTCTTCGTCTCATCTGTTCTGGCTCC
AGTCTACACACCTTTCGGTGCACATAATTCCGACGTGTCAGTTGGGGTCA
CACAAGAGGAAGGATACACGGGAGTTCCTCCATTTTTTGTTTTAGTGCCT
CAACTTTCTCCCCGCGGTGCTTGTCATAGTTTGGTCGCGACAAGGGGTCA
ACTATCCCTTTCCCTCGTCTCGACCATGAAGCCGAAGTGTATGATATGAT
GTGACTGCGCAGGTAGGATCCCGTGCCCCCTCTTGTTTCGCCTATGTAGT
ACGGAACAACGGCAGTGGAGCAGATTCCCACTGCACGGTAGTAGTTGCGC
CAGGGCAGTGCTGGTGTTGTTGGGTCTTGCTCTGTGCAGTCCATGATAAA
CACGAACGTCACTCTGCGCAATGATGTGGCCGTGTGTGCACAACGCCTAG
CGTTCCCCGGCTGATAACACGCGAGCGCCGAAGCTTACACCTAGCACCTA
GGTACACCTAGCACCTAGGTACACGGCGGTTGGACTTGTGTTTTCTATTT
TCCTGGGGACCGTTATGCCGAATGTGGTCGCAGATTCATGCAGGAGCCGC
GGACGCAGCATGGCACAGCAGTAGTAACATCAGGCACTTTTTTCCGTTGA
CCCTCGGGTTTTTTGGCGGCACTTGCTTCGATTGCCTGTGTACCACACCT
CGCCGTAGATGGTTGTTCTATAGAGCTCCCCATATATTCCCGATGGACGC
AAGGGTATGCCTGCCGTCTGTTTTGAGCGTGGTCCGATACGCTTAGTTGC
GAGAGAC
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Coding sequence (CDS) from alignment at Scaffold_228:905..4511+

>EsuBft1002_10a-0001 ID=EsuBft1002_10a-0001|Name=EsuBft1002_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=78bp|location=Sequence derived from alignment at Scaffold_228:905..4511+ (Ectocarpus subulatus male Bft15b)
ATGATGTTTCTGGAAGATGCTTCGTTTCAGTTCTTCCACAAAGCGGGTGG
GCCGATGACGTCCAGACTTTCGGAATAG
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