EsuBft1001_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1001_6a-0001
Unique NameEsuBft1001_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_30contigScaffold_30:68667..74412 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1001_6
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsTRANSMEMBRANE
Protein domainsSIGNAL_PEPTIDE
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length235
Hectar predicted targeting categorysignal peptide
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1001_6aEsuBft1001_6aEctocarpus subulatus male Bft15bgeneScaffold_30 68667..74412 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1001_6a-0001EsuBft1001_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_30 70551..72672 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1001_6a-0001-exonEsuBft1001_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_30 68667..68825 +
EsuBft1001_6a-0001-exonagat-exon-110322Ectocarpus subulatus male Bft15bexonScaffold_30 70505..70582 +
EsuBft1001_6a-0001-exonagat-exon-110323Ectocarpus subulatus male Bft15bexonScaffold_30 70992..71128 +
EsuBft1001_6a-0001-exonagat-exon-110325Ectocarpus subulatus male Bft15bexonScaffold_30 71955..72058 +
EsuBft1001_6a-0001-exonagat-exon-110324Ectocarpus subulatus male Bft15bexonScaffold_30 72541..74412 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1001_6a-0001-exonagat-five_prime_utr-7Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_30 68667..68825 +
EsuBft1001_6a-0001-exonagat-five_prime_utr-8Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_30 70505..70550 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1001_6a-0001-cdsEsuBft1001_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_30 70551..70582 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1001_6a-0001-exonagat-three_prime_utr-9Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_30 72673..74412 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1001_6a-0001 ID=EsuBft1001_6a-0001|Name=EsuBft1001_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2350bp|location=Sequence derived from alignment at Scaffold_30:68667..74412+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCCAACATACACAACGCAAAAACGCCCGAGAGCGAGAGGGTGTGGGGAG
CAAAGGGCGCCTCCTTTGCAAAGAACTCTGCAGCATCAGGGAGGGAGAGC
AATTAAGACTTTAGTTCCTGTGGCGACGACGGGCGGGGTACGACAAGTGC
AAAGCGCAGGTGTGCTTGTTGCGTGGACACGGTACGAGATTCATACGCTG
CAGCCATGAACCCTGTGAGATACGCGCCTCTTTGCGGTGTTCTGTGTCAC
GGCAGTCTTCCCCTAGGGGCCATGTTTTCGCTGGTGGTTGTCTTGGCGGG
GTCGGTTGCTTCTGCCGACACAACCGGCAGCATTTCGGCGCAGACTACTA
GCGGCAACGCCGGTCTCCGCTCAGGCAAGGCATGCGATCCCGGGGACGCC
GACTGCCTCGGAGACGAAAGGGACGACTCCAGCTTCCTCGGCTTCGCATG
CATCTGTTACATGGTCTCACTGTTTGTGGTGTTTCGCACCTTGCGGGTTG
CTGCGATGTGGGTGAGAGGAACTGCAATACTCGTCCGTCTATGGGCTAGG
GAGAGGGGGCTTATGGTCCGTCCAGGACGTCAGTTCCAAGGGTTGATCAT
CTGGCCATAACTTTCAAGACCATATTTTCAAACTAGGCGGGAGTCCACCC
GTTCTACAAGTGATCCCCGCGTCGAGGCAGACGACACAGGTTTCGAACTA
TAACTTTGCCAGGAAAAACAGGCACGCGAAATATTTAGTTCAATTCTTTT
TTGGGCCAATCTTGATTTGAAGACTGGGAGACGATGTGGGATTTTGAAAA
CATGTGGAATATCTTACTCAGGTTTGATTTTTTGCTTTAGTCGGTAAACC
TCGACTCTCGGAACTATGCATACGAGGGGGAGTCGCGTGCCGCGCTCCAT
AGGAAAATCGTGCTGGTGGTGGTTATCGCAGGACAACGAGCAACAAAAAC
CCGACCAGATTCGGTTTGTGGGCCATGTTTTTTTCGTCGATGCTCGTCGA
AAATTGTTAGTATGAAATTCGGGATTTGGGTAGAGCTGTTCATATCTAGT
ATCAGATAACTGGTCAAAAAATAGGTCCTCAGGATATGCGAGCAAGGTTT
TCAACAGGGGGGCACGGGGGGGAGGTGGATGGACCAAACGGTTGGGACAC
GGCTGATTGCTCGTGGTCTCTTGAACATGCACTCACCACAGGCGAATGTA
CCAGAATTTTTGTACAAAGCACGAGCGCTAAGAAGTGCAATGGAGAACAC
AGAATCCTCTGCGGTTGTAGGGGGAGATTGGAGAGGGGTCAGTAAAAGTG
GAGGCTCGACTTGAGCACGCACACAGTAGCATGGCGTAGCAGGGTCCAGG
ACCTTGCGATGTTGGAAAGGATCCCGAAAGTGAGAGATAGATGCAAGGGT
AGGGGAAGTCGAAACGTCAGAGCTCTGTGTCTCTTGGAAGAAAGACGTTG
TACAACAAGGCGCACGGCGTGGCGGGGCTCGGTCTTGTCCAGGGTAACCC
TCCGCAGCACGTTCTTTGGCGGATGAAGCCGGCATGCCCTTCGTTACAAT
TTTCTGCACCAAGGCGGGTGCGTTTGTACGTGCGGGTCTTCTTTTTTAAG
TTGGATTGTATAGGCTTTTTTTGGTGTCATGTAGTTTGGAGGGGTGGAAA
GGAATGATTTGACCCATCAGACTGTTGTTAGGAGCTTCGAGGGTGTCGTC
GATTTCTGTTTTTTTGTGAGAGATTGCATGTGAAGCTCTTCTTCCAAATA
CTCCGGGGTGCGGAGAGGAGCCCACCTGATCGACTGGAGAAACCTGACGA
TGACCGACCCTCGGCGTGATAGGGTTGCGAGCGGTGTAGCAAGTTGTTTG
TGGTGGTCGTGGTGCTCCTGCAGCGTCGGTAGGGGCCAAGACGTAGGATC
CCAGCCAGAGCGATGGAAGGCTTTCAGCTTCTTCTTTTTGTGGGACTGCA
TTTCGGGCGCGGCATGTTTGTTCTTCCTCTGCTCCACACACGTGGGCACT
TCATGTTGATAGAATGAAGTTCTCTTTGTGGCAGAGCACATGTAGGTCTC
CGTTATTTTGTTCCTTCTGCCCTTTTTTCAGCGTGTGTTCGACCGGGGAT
AGTCGCTTCCCGCTGTTGAAGAGAAATGGAGCAAGACCTGCTGGAGAGAG
CCCTTTCTACTTCGGAGAGAACAACGACAGCGCATCAACAACCAAGACCA
CAGCCAGTGCCAGTGCCCGCCCTCTTGAGAATCGGAGAGGAATTGCCGTT
CTTTCAACTGACAAAAAGGCCGAGGTTCAAGTTGCTAGTGCAGTTCTAGG
TCAGGTCCATTAACGCACGATTACGCTGGAGCCTGTTTCTTTGTAGCCCG
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protein sequence of EsuBft1001_6a-0001

>EsuBft1001_6 ID=EsuBft1001_6|Name=EsuBft1001_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=134bp
MNPVRYAPLCGVLCHGSLPLGAMFSLVVVLAGSVASADTTGSISAQTTSG
NAGLRSGKACDPGDADCLGDERDDSSFLGFACICYMVSLFVVFRTLRVAA
MWVRGTAILVRLWARERGLMVRPGRQFQGLIIWP
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mRNA from alignment at Scaffold_30:68667..74412+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1001_6a-0001 ID=EsuBft1001_6a-0001|Name=EsuBft1001_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5746bp|location=Sequence derived from alignment at Scaffold_30:68667..74412+ (Ectocarpus subulatus male Bft15b)
TGCCAACATACACAACGCAAAAACGCCCGAGAGCGAGAGGGTGTGGGGAG CAAAGGGCGCCTCCTTTGCAAAGAACTCTGCAGCATCAGGGAGGGAGAGC AATTAAGACTTTAGTTCCTGTGGCGACGACGGGCGGGGTACGACAAGTGC AAAGCGCAGGTATGCAGCCACCACCAGCCGGTCTGAAGACGGCAATTTTA CCCAGGGATTAGTTTCAGCGGCAACGTGATTTGGAACAACGAGAGAGGTC GCCCAGGGCAAAATGGACGAGAAGGGAAAGGGGGGCAACGAGGAGTAGAG CGCTTGTAACCCGTCCAAGCCTGCCTTCTCAATATTTGCATCGGTCGCGG CGTAGATAGGCTGGTTTACCGAGGCTGAATGTTTTTTTGAAGAGCGAGGG GGTCATCTCGTCACCCGCTCGTGCTGTCTCTCTTTCTCTCTGCCGGGCCG GCGATGAGGGGCATCGCGCCCCAAGCACGGCTCGACTCTGTCAGCTATGG GTTTTATTGTCCCGAGCACTAGCTTGGTACGTCAGATTCCCCACACAAGG GCAAGAGTGCCGCCTTTCAGGTGTGGGACGAAAGGTGGTGCGTTATTATT CTCCATTAGGATACATCCCGCCCAAAACGGAGACGGACATTGGGGGTTAA GTGGGGGCGGCAAGATGTATGGTTGACGGCAACACACACAGCTCGTCTGC ACGTATGGCAGCGCGAGGCAAGAGTGTACATAGTTTACGCAAGGGGCCTC TTGTTGTATCAGAAACTGCTAATATCTCCCAACGCGAGACAATAACAGAG TACAACAACATGACATGGACGGGTTATACTGCTATCGGTGCTTGGGTGTA CAGGCGCTCCGACTTCACTTCCTCTCTGTTCCAGCCTACAAAAGACCTTG TTAATGCATGTATTACTCTACGCTGCGGCTGCATTTCCTCTGTTCCAGCC AAGCAAAGTTCACTTTGGGTCTTAGGTCTCTAGGAATCTGCACCCTTGGG TGGTTCCTTGGGGTCACTGGGTGGGAGTAAAGAACAGGCCGAGGATAAAA CGGGGTGGGGCGGCGCACGGTCCTTTGTTCCCCACATTCGCGTGGAATAT GGTGTCAGCGTTTGGGCACTTGAGGCGCAACAACAAAAGTGGTGCCGATA CACCGATTCTAAACTTGATGTGGAGACGGAGCAGCCTGGGAAGGGGGTTT GAGGACAGGCGGGAGTGGTCCATCACCTAGGTTTCCCCCTCTCAAGCAAC ACCGATATGGTCGAGAGCACTTGACAAGTGGAACCATGAGGCCTTGTAAC CGTTATCTCTAGTATGTGGTGTAGTACGAGTTGATGGTCCCGGTAAAGGG CGGTTGACCTCCGGTACACGCGTAACTGAGCATTTTGAACCTCAACCTGC AACCACCCAAACGAAGGAAGTTGGGCGTCTTCGCAGGGCCAACCAACGGC AGGGAAACTGCACGCACAAAAGGAAGTGATTCTCAAATTCATGATAATTG CACCCCAACAACTGAAACAGAAAAATGTATATGAAACGTTACATGTAACA CAAGCAACCATTTCCATTGCACTGCATGTTGTCTGTTTTCGTCCGCGGCG TTGGCAACCTTGATGCGGGAGTGTGATGATGAAGGGCCGTCCCCGTGCGC TTTGCGGCAGAAGCCCGTGTTTCGAACTACTGTAAAAAACCGTTTTTAAG TCGGGGGGTGCCCGATGATGAGGCTTTCGTCCTCATTCTTTTTTCGGTCC GTTCGATTGTCCTTGAAACCGGCCATCCATGCTGCCGAACGCCCAAATCG CGGGGCACCGCCGTCTCCCCCACCATTGGTTGCCCCAGGTGTGCTTGTTG CGTGGACACGGTACGAGATTCATACGCTGCAGCCATGAACCCTGTGAGAT ACGCGCCTCTTTGCGGGTAAGAAAGACGATATCATGCCTTCGATTTAGTA CGTTATTTTAGTGGTAAGCTGATCCAGATCTACCACTTTCCATAATGAAA ACGCAACTTGTTTTCGATCATCCCTCGGTAGTTTCGTGTCGAACGGTAGG CGCGCAAGTAGTGACATCACATGTATATATCCCACCAACCACCAGAACAC CCGCGTGCAAGCAGTCGCATTTGCATGTGCACGTCTCACCACCAGCGGCC GGGGTCATGAGCACGGATCCCGAGCACGCTCGCGAAGCAAACATACTGCC GCTGTTAATGAACGTTTACCGTCGGTGCGTGTTTCAGCGTAGTCTCTACG TAAAATATGACATGGGTGCCCTGGCGTACATACATACGTGTAGTTCCAAC CTGCCCTCCGCCATGCCCCCATAAGTGTTCTGTGTCACGGCAGTCTTCCC CTAGGGGCCATGTTTTCGCTGGTGGTTGTCTTGGCGGGGTCGGTTGCTTC TGCCGACACAACCGGCAGCATTTCGGCGCAGACTACTAGCGGCAACGCCG GTCTCCGCTCAGGTAGGCTCCACAACGAGCAGACGCTCGTTGGATTGTCA TCGTGTTTTGGCTCGGGGGGGAGCCCTGTCCCTTGCTGCTGCGTTCGCCC GAGATGGAAGCCTTTCTTCAGTCGTTGACCCACCGGGAGATGAAAGCTCC CGACTGCGTAACCGACTAAATAGGTATTTCGTCATGTCGTGTTCGTCTCG CGGCTGAGCATATCATCGTGACGAATAAAGTCTCTAACTCACGCTGGATT TGTTGTGTTGTTGAGCGTTGTCTATACCTCGAGGCATAGCTCTGGCCGCC GTCCGTCCTTTGGTCGAGGAACGGGCGTCATTTTCCGTTATGTCCGACCT CCCGTGCAGTCGCATCACAGGTGGAGGTCCATCTCCCCTTTCCGAATATG CCGGATGCCGGCGCCCGCTTGTGGAGACCTTGTCTAGGTCGACCTCCTTG GAAATCACAACCAAGGCCACGAAAGGGGGGAACGAGGTATTTTCGAGGCC TTGGTTGTGATTTCCAAGGAGGTCGACCTTGACAAGGCCTCCACAAGGGG GTGCGGGCATCCGACATTTTGGGGAAGGGGAGTCGACCTTCACCTGTGCA GGCAGGCATCAGTGCCGGCTGGTTGTGAACGCTGACACGCAGTGACATTG AGTGAAATTGGGCAAACCGGAAACACAAGCGCACTAGCCAGTGTCCCCAA CAACACGCCTCGCGTGATACGCCCCTCTCAAAGAGCCGCGCTCCGATGAC CACATGTCAAGTGCTTGAAAAAACCGTCGAGTGAGATGATGCTCATGTGG CATGATGAACGCGGATATGATGATGATGACGTCACCAGGCAAGGCATGCG ATCCCGGGGACGCCGACTGCCTCGGAGACGAAAGGGACGACTCCAGCTTC CTCGGCTTCGCATGCATCTGTTACATGGTCTCACTGTTTGTGGTGAGAAG AAAGAGTGTGGCGCCCTCGTGCGACCCAGCTTTTTTTACTGGAGCTTGTC CAAATGTTGCATTGGCGGAAAGTTGTTATCTTTTTGTCTTGTGGCCTTGT TGCCACGTTCACACAGGCAGGGCCCCGTCGCGTCTCTTTGCTCGCGTGAG GCTTCTGTTCGATTTCTCGAATGGTGTAACGGCCAAATCGTTCAACACTT GTTTTCGCGCCGGCCCAAGGTACGTAAGTCCAGGGATGTTCACGGTGCGG TTTTTTTCATCTGGGAATGTCACGGTGCGGTGCGGTTCCTTCCCATTTCG AGACAAAAAAAAACGCACGGCACCACACCGTACCGTGACCATGAGATACA ATACAAAAAATGGCACTGCGGACAGTGCGGTTCAATATGGTGTGGTGAAC ACCCCTGAAAATATTGTTCTCCCGCCCCGCTTTCCCTCGTGCCCGGTCGT GCTTCTCGTCGGCTCTCGCGACAGGTGTTTCGCACCTTGCGGGTTGCTGC GATGTGGGTGAGAGGAACTGCAATACTCGTCCGTCTATGGGCTAGGGAGA GGGGGCTTATGGTCCGTCCAGGACGTCAGTTCCAAGGGTTGATCATCTGG CCATAACTTTCAAGACCATATTTTCAAACTAGGCGGGAGTCCACCCGTTC TACAAGTGATCCCCGCGTCGAGGCAGACGACACAGGTTTCGAACTATAAC TTTGCCAGGAAAAACAGGCACGCGAAATATTTAGTTCAATTCTTTTTTGG GCCAATCTTGATTTGAAGACTGGGAGACGATGTGGGATTTTGAAAACATG TGGAATATCTTACTCAGGTTTGATTTTTTGCTTTAGTCGGTAAACCTCGA CTCTCGGAACTATGCATACGAGGGGGAGTCGCGTGCCGCGCTCCATAGGA AAATCGTGCTGGTGGTGGTTATCGCAGGACAACGAGCAACAAAAACCCGA CCAGATTCGGTTTGTGGGCCATGTTTTTTTCGTCGATGCTCGTCGAAAAT TGTTAGTATGAAATTCGGGATTTGGGTAGAGCTGTTCATATCTAGTATCA GATAACTGGTCAAAAAATAGGTCCTCAGGATATGCGAGCAAGGTTTTCAA CAGGGGGGCACGGGGGGGAGGTGGATGGACCAAACGGTTGGGACACGGCT GATTGCTCGTGGTCTCTTGAACATGCACTCACCACAGGCGAATGTACCAG AATTTTTGTACAAAGCACGAGCGCTAAGAAGTGCAATGGAGAACACAGAA TCCTCTGCGGTTGTAGGGGGAGATTGGAGAGGGGTCAGTAAAAGTGGAGG CTCGACTTGAGCACGCACACAGTAGCATGGCGTAGCAGGGTCCAGGACCT TGCGATGTTGGAAAGGATCCCGAAAGTGAGAGATAGATGCAAGGGTAGGG GAAGTCGAAACGTCAGAGCTCTGTGTCTCTTGGAAGAAAGACGTTGTACA ACAAGGCGCACGGCGTGGCGGGGCTCGGTCTTGTCCAGGGTAACCCTCCG CAGCACGTTCTTTGGCGGATGAAGCCGGCATGCCCTTCGTTACAATTTTC TGCACCAAGGCGGGTGCGTTTGTACGTGCGGGTCTTCTTTTTTAAGTTGG ATTGTATAGGCTTTTTTTGGTGTCATGTAGTTTGGAGGGGTGGAAAGGAA TGATTTGACCCATCAGACTGTTGTTAGGAGCTTCGAGGGTGTCGTCGATT TCTGTTTTTTTGTGAGAGATTGCATGTGAAGCTCTTCTTCCAAATACTCC GGGGTGCGGAGAGGAGCCCACCTGATCGACTGGAGAAACCTGACGATGAC CGACCCTCGGCGTGATAGGGTTGCGAGCGGTGTAGCAAGTTGTTTGTGGT GGTCGTGGTGCTCCTGCAGCGTCGGTAGGGGCCAAGACGTAGGATCCCAG CCAGAGCGATGGAAGGCTTTCAGCTTCTTCTTTTTGTGGGACTGCATTTC GGGCGCGGCATGTTTGTTCTTCCTCTGCTCCACACACGTGGGCACTTCAT GTTGATAGAATGAAGTTCTCTTTGTGGCAGAGCACATGTAGGTCTCCGTT ATTTTGTTCCTTCTGCCCTTTTTTCAGCGTGTGTTCGACCGGGGATAGTC GCTTCCCGCTGTTGAAGAGAAATGGAGCAAGACCTGCTGGAGAGAGCCCT TTCTACTTCGGAGAGAACAACGACAGCGCATCAACAACCAAGACCACAGC CAGTGCCAGTGCCCGCCCTCTTGAGAATCGGAGAGGAATTGCCGTTCTTT CAACTGACAAAAAGGCCGAGGTTCAAGTTGCTAGTGCAGTTCTAGGTCAG GTCCATTAACGCACGATTACGCTGGAGCCTGTTTCTTTGTAGCCCG
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Coding sequence (CDS) from alignment at Scaffold_30:68667..74412+

>EsuBft1001_6a-0001 ID=EsuBft1001_6a-0001|Name=EsuBft1001_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=405bp|location=Sequence derived from alignment at Scaffold_30:68667..74412+ (Ectocarpus subulatus male Bft15b)
ATGAACCCTGTGAGATACGCGCCTCTTTGCGGTGTTCTGTGTCACGGCAG
TCTTCCCCTAGGGGCCATGTTTTCGCTGGTGGTTGTCTTGGCGGGGTCGG
TTGCTTCTGCCGACACAACCGGCAGCATTTCGGCGCAGACTACTAGCGGC
AACGCCGGTCTCCGCTCAGGCAAGGCATGCGATCCCGGGGACGCCGACTG
CCTCGGAGACGAAAGGGACGACTCCAGCTTCCTCGGCTTCGCATGCATCT
GTTACATGGTCTCACTGTTTGTGGTGTTTCGCACCTTGCGGGTTGCTGCG
ATGTGGGTGAGAGGAACTGCAATACTCGTCCGTCTATGGGCTAGGGAGAG
GGGGCTTATGGTCCGTCCAGGACGTCAGTTCCAAGGGTTGATCATCTGGC
CATAA
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