EsuBft1001_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
ProteomeId	EsuBft1001_6
Protein domains	CYTOPLASMIC_DOMAIN
Protein domains	TMhelix
Protein domains	SignalP-TM
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SignalP-noTM
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	TRANSMEMBRANE
Protein domains	SIGNAL_PEPTIDE
Owner	apollo_admin@sb-roscoff.fr
Nb exon	4
Length	235
Hectar predicted targeting category	signal peptide
Date last modified	2016-06-13
Date creation	2016-06-13

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_30:68667..74412+
coding sequence from alignment at Scaffold_30:68667..74412+

spliced messenger RNA

>EsuBft1001_6a-0001 ID=EsuBft1001_6a-0001|Name=EsuBft1001_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2350bp|location=Sequence derived from alignment at Scaffold_30:68667..74412+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCCAACATACACAACGCAAAAACGCCCGAGAGCGAGAGGGTGTGGGGAG
CAAAGGGCGCCTCCTTTGCAAAGAACTCTGCAGCATCAGGGAGGGAGAGC
AATTAAGACTTTAGTTCCTGTGGCGACGACGGGCGGGGTACGACAAGTGC
AAAGCGCAGGTGTGCTTGTTGCGTGGACACGGTACGAGATTCATACGCTG
CAGCCATGAACCCTGTGAGATACGCGCCTCTTTGCGGTGTTCTGTGTCAC
GGCAGTCTTCCCCTAGGGGCCATGTTTTCGCTGGTGGTTGTCTTGGCGGG
GTCGGTTGCTTCTGCCGACACAACCGGCAGCATTTCGGCGCAGACTACTA
GCGGCAACGCCGGTCTCCGCTCAGGCAAGGCATGCGATCCCGGGGACGCC
GACTGCCTCGGAGACGAAAGGGACGACTCCAGCTTCCTCGGCTTCGCATG
CATCTGTTACATGGTCTCACTGTTTGTGGTGTTTCGCACCTTGCGGGTTG
CTGCGATGTGGGTGAGAGGAACTGCAATACTCGTCCGTCTATGGGCTAGG
GAGAGGGGGCTTATGGTCCGTCCAGGACGTCAGTTCCAAGGGTTGATCAT
CTGGCCATAACTTTCAAGACCATATTTTCAAACTAGGCGGGAGTCCACCC
GTTCTACAAGTGATCCCCGCGTCGAGGCAGACGACACAGGTTTCGAACTA
TAACTTTGCCAGGAAAAACAGGCACGCGAAATATTTAGTTCAATTCTTTT
TTGGGCCAATCTTGATTTGAAGACTGGGAGACGATGTGGGATTTTGAAAA
CATGTGGAATATCTTACTCAGGTTTGATTTTTTGCTTTAGTCGGTAAACC
TCGACTCTCGGAACTATGCATACGAGGGGGAGTCGCGTGCCGCGCTCCAT
AGGAAAATCGTGCTGGTGGTGGTTATCGCAGGACAACGAGCAACAAAAAC
CCGACCAGATTCGGTTTGTGGGCCATGTTTTTTTCGTCGATGCTCGTCGA
AAATTGTTAGTATGAAATTCGGGATTTGGGTAGAGCTGTTCATATCTAGT
ATCAGATAACTGGTCAAAAAATAGGTCCTCAGGATATGCGAGCAAGGTTT
TCAACAGGGGGGCACGGGGGGGAGGTGGATGGACCAAACGGTTGGGACAC
GGCTGATTGCTCGTGGTCTCTTGAACATGCACTCACCACAGGCGAATGTA
CCAGAATTTTTGTACAAAGCACGAGCGCTAAGAAGTGCAATGGAGAACAC
AGAATCCTCTGCGGTTGTAGGGGGAGATTGGAGAGGGGTCAGTAAAAGTG
GAGGCTCGACTTGAGCACGCACACAGTAGCATGGCGTAGCAGGGTCCAGG
ACCTTGCGATGTTGGAAAGGATCCCGAAAGTGAGAGATAGATGCAAGGGT
AGGGGAAGTCGAAACGTCAGAGCTCTGTGTCTCTTGGAAGAAAGACGTTG
TACAACAAGGCGCACGGCGTGGCGGGGCTCGGTCTTGTCCAGGGTAACCC
TCCGCAGCACGTTCTTTGGCGGATGAAGCCGGCATGCCCTTCGTTACAAT
TTTCTGCACCAAGGCGGGTGCGTTTGTACGTGCGGGTCTTCTTTTTTAAG
TTGGATTGTATAGGCTTTTTTTGGTGTCATGTAGTTTGGAGGGGTGGAAA
GGAATGATTTGACCCATCAGACTGTTGTTAGGAGCTTCGAGGGTGTCGTC
GATTTCTGTTTTTTTGTGAGAGATTGCATGTGAAGCTCTTCTTCCAAATA
CTCCGGGGTGCGGAGAGGAGCCCACCTGATCGACTGGAGAAACCTGACGA
TGACCGACCCTCGGCGTGATAGGGTTGCGAGCGGTGTAGCAAGTTGTTTG
TGGTGGTCGTGGTGCTCCTGCAGCGTCGGTAGGGGCCAAGACGTAGGATC
CCAGCCAGAGCGATGGAAGGCTTTCAGCTTCTTCTTTTTGTGGGACTGCA
TTTCGGGCGCGGCATGTTTGTTCTTCCTCTGCTCCACACACGTGGGCACT
TCATGTTGATAGAATGAAGTTCTCTTTGTGGCAGAGCACATGTAGGTCTC
CGTTATTTTGTTCCTTCTGCCCTTTTTTCAGCGTGTGTTCGACCGGGGAT
AGTCGCTTCCCGCTGTTGAAGAGAAATGGAGCAAGACCTGCTGGAGAGAG
CCCTTTCTACTTCGGAGAGAACAACGACAGCGCATCAACAACCAAGACCA
CAGCCAGTGCCAGTGCCCGCCCTCTTGAGAATCGGAGAGGAATTGCCGTT
CTTTCAACTGACAAAAAGGCCGAGGTTCAAGTTGCTAGTGCAGTTCTAGG
TCAGGTCCATTAACGCACGATTACGCTGGAGCCTGTTTCTTTGTAGCCCG

protein sequence of EsuBft1001_6a-0001

>EsuBft1001_6 ID=EsuBft1001_6|Name=EsuBft1001_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=134bp
MNPVRYAPLCGVLCHGSLPLGAMFSLVVVLAGSVASADTTGSISAQTTSG
NAGLRSGKACDPGDADCLGDERDDSSFLGFACICYMVSLFVVFRTLRVAA
MWVRGTAILVRLWARERGLMVRPGRQFQGLIIWP

mRNA from alignment at Scaffold_30:68667..74412+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1001_6a-0001 ID=EsuBft1001_6a-0001|Name=EsuBft1001_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5746bp|location=Sequence derived from alignment at Scaffold_30:68667..74412+ (Ectocarpus subulatus male Bft15b)
TGCCAACATACACAACGCAAAAACGCCCGAGAGCGAGAGGGTGTGGGGAG
CAAAGGGCGCCTCCTTTGCAAAGAACTCTGCAGCATCAGGGAGGGAGAGC
AATTAAGACTTTAGTTCCTGTGGCGACGACGGGCGGGGTACGACAAGTGC
AAAGCGCAGGTATGCAGCCACCACCAGCCGGTCTGAAGACGGCAATTTTA
CCCAGGGATTAGTTTCAGCGGCAACGTGATTTGGAACAACGAGAGAGGTC
GCCCAGGGCAAAATGGACGAGAAGGGAAAGGGGGGCAACGAGGAGTAGAG
CGCTTGTAACCCGTCCAAGCCTGCCTTCTCAATATTTGCATCGGTCGCGG
CGTAGATAGGCTGGTTTACCGAGGCTGAATGTTTTTTTGAAGAGCGAGGG
GGTCATCTCGTCACCCGCTCGTGCTGTCTCTCTTTCTCTCTGCCGGGCCG
GCGATGAGGGGCATCGCGCCCCAAGCACGGCTCGACTCTGTCAGCTATGG
GTTTTATTGTCCCGAGCACTAGCTTGGTACGTCAGATTCCCCACACAAGG
GCAAGAGTGCCGCCTTTCAGGTGTGGGACGAAAGGTGGTGCGTTATTATT
CTCCATTAGGATACATCCCGCCCAAAACGGAGACGGACATTGGGGGTTAA
GTGGGGGCGGCAAGATGTATGGTTGACGGCAACACACACAGCTCGTCTGC
ACGTATGGCAGCGCGAGGCAAGAGTGTACATAGTTTACGCAAGGGGCCTC
TTGTTGTATCAGAAACTGCTAATATCTCCCAACGCGAGACAATAACAGAG
TACAACAACATGACATGGACGGGTTATACTGCTATCGGTGCTTGGGTGTA
CAGGCGCTCCGACTTCACTTCCTCTCTGTTCCAGCCTACAAAAGACCTTG
TTAATGCATGTATTACTCTACGCTGCGGCTGCATTTCCTCTGTTCCAGCC
AAGCAAAGTTCACTTTGGGTCTTAGGTCTCTAGGAATCTGCACCCTTGGG
TGGTTCCTTGGGGTCACTGGGTGGGAGTAAAGAACAGGCCGAGGATAAAA
CGGGGTGGGGCGGCGCACGGTCCTTTGTTCCCCACATTCGCGTGGAATAT
GGTGTCAGCGTTTGGGCACTTGAGGCGCAACAACAAAAGTGGTGCCGATA
CACCGATTCTAAACTTGATGTGGAGACGGAGCAGCCTGGGAAGGGGGTTT
GAGGACAGGCGGGAGTGGTCCATCACCTAGGTTTCCCCCTCTCAAGCAAC
ACCGATATGGTCGAGAGCACTTGACAAGTGGAACCATGAGGCCTTGTAAC
CGTTATCTCTAGTATGTGGTGTAGTACGAGTTGATGGTCCCGGTAAAGGG
CGGTTGACCTCCGGTACACGCGTAACTGAGCATTTTGAACCTCAACCTGC
AACCACCCAAACGAAGGAAGTTGGGCGTCTTCGCAGGGCCAACCAACGGC
AGGGAAACTGCACGCACAAAAGGAAGTGATTCTCAAATTCATGATAATTG
CACCCCAACAACTGAAACAGAAAAATGTATATGAAACGTTACATGTAACA
CAAGCAACCATTTCCATTGCACTGCATGTTGTCTGTTTTCGTCCGCGGCG
TTGGCAACCTTGATGCGGGAGTGTGATGATGAAGGGCCGTCCCCGTGCGC
TTTGCGGCAGAAGCCCGTGTTTCGAACTACTGTAAAAAACCGTTTTTAAG
TCGGGGGGTGCCCGATGATGAGGCTTTCGTCCTCATTCTTTTTTCGGTCC
GTTCGATTGTCCTTGAAACCGGCCATCCATGCTGCCGAACGCCCAAATCG
CGGGGCACCGCCGTCTCCCCCACCATTGGTTGCCCCAGGTGTGCTTGTTG
CGTGGACACGGTACGAGATTCATACGCTGCAGCCATGAACCCTGTGAGAT
ACGCGCCTCTTTGCGGGTAAGAAAGACGATATCATGCCTTCGATTTAGTA
CGTTATTTTAGTGGTAAGCTGATCCAGATCTACCACTTTCCATAATGAAA
ACGCAACTTGTTTTCGATCATCCCTCGGTAGTTTCGTGTCGAACGGTAGG
CGCGCAAGTAGTGACATCACATGTATATATCCCACCAACCACCAGAACAC
CCGCGTGCAAGCAGTCGCATTTGCATGTGCACGTCTCACCACCAGCGGCC
GGGGTCATGAGCACGGATCCCGAGCACGCTCGCGAAGCAAACATACTGCC
GCTGTTAATGAACGTTTACCGTCGGTGCGTGTTTCAGCGTAGTCTCTACG
TAAAATATGACATGGGTGCCCTGGCGTACATACATACGTGTAGTTCCAAC
CTGCCCTCCGCCATGCCCCCATAAGTGTTCTGTGTCACGGCAGTCTTCCC
CTAGGGGCCATGTTTTCGCTGGTGGTTGTCTTGGCGGGGTCGGTTGCTTC
TGCCGACACAACCGGCAGCATTTCGGCGCAGACTACTAGCGGCAACGCCG
GTCTCCGCTCAGGTAGGCTCCACAACGAGCAGACGCTCGTTGGATTGTCA
TCGTGTTTTGGCTCGGGGGGGAGCCCTGTCCCTTGCTGCTGCGTTCGCCC
GAGATGGAAGCCTTTCTTCAGTCGTTGACCCACCGGGAGATGAAAGCTCC
CGACTGCGTAACCGACTAAATAGGTATTTCGTCATGTCGTGTTCGTCTCG
CGGCTGAGCATATCATCGTGACGAATAAAGTCTCTAACTCACGCTGGATT
TGTTGTGTTGTTGAGCGTTGTCTATACCTCGAGGCATAGCTCTGGCCGCC
GTCCGTCCTTTGGTCGAGGAACGGGCGTCATTTTCCGTTATGTCCGACCT
CCCGTGCAGTCGCATCACAGGTGGAGGTCCATCTCCCCTTTCCGAATATG
CCGGATGCCGGCGCCCGCTTGTGGAGACCTTGTCTAGGTCGACCTCCTTG
GAAATCACAACCAAGGCCACGAAAGGGGGGAACGAGGTATTTTCGAGGCC
TTGGTTGTGATTTCCAAGGAGGTCGACCTTGACAAGGCCTCCACAAGGGG
GTGCGGGCATCCGACATTTTGGGGAAGGGGAGTCGACCTTCACCTGTGCA
GGCAGGCATCAGTGCCGGCTGGTTGTGAACGCTGACACGCAGTGACATTG
AGTGAAATTGGGCAAACCGGAAACACAAGCGCACTAGCCAGTGTCCCCAA
CAACACGCCTCGCGTGATACGCCCCTCTCAAAGAGCCGCGCTCCGATGAC
CACATGTCAAGTGCTTGAAAAAACCGTCGAGTGAGATGATGCTCATGTGG
CATGATGAACGCGGATATGATGATGATGACGTCACCAGGCAAGGCATGCG
ATCCCGGGGACGCCGACTGCCTCGGAGACGAAAGGGACGACTCCAGCTTC
CTCGGCTTCGCATGCATCTGTTACATGGTCTCACTGTTTGTGGTGAGAAG
AAAGAGTGTGGCGCCCTCGTGCGACCCAGCTTTTTTTACTGGAGCTTGTC
CAAATGTTGCATTGGCGGAAAGTTGTTATCTTTTTGTCTTGTGGCCTTGT
TGCCACGTTCACACAGGCAGGGCCCCGTCGCGTCTCTTTGCTCGCGTGAG
GCTTCTGTTCGATTTCTCGAATGGTGTAACGGCCAAATCGTTCAACACTT
GTTTTCGCGCCGGCCCAAGGTACGTAAGTCCAGGGATGTTCACGGTGCGG
TTTTTTTCATCTGGGAATGTCACGGTGCGGTGCGGTTCCTTCCCATTTCG
AGACAAAAAAAAACGCACGGCACCACACCGTACCGTGACCATGAGATACA
ATACAAAAAATGGCACTGCGGACAGTGCGGTTCAATATGGTGTGGTGAAC
ACCCCTGAAAATATTGTTCTCCCGCCCCGCTTTCCCTCGTGCCCGGTCGT
GCTTCTCGTCGGCTCTCGCGACAGGTGTTTCGCACCTTGCGGGTTGCTGC
GATGTGGGTGAGAGGAACTGCAATACTCGTCCGTCTATGGGCTAGGGAGA
GGGGGCTTATGGTCCGTCCAGGACGTCAGTTCCAAGGGTTGATCATCTGG
CCATAACTTTCAAGACCATATTTTCAAACTAGGCGGGAGTCCACCCGTTC
TACAAGTGATCCCCGCGTCGAGGCAGACGACACAGGTTTCGAACTATAAC
TTTGCCAGGAAAAACAGGCACGCGAAATATTTAGTTCAATTCTTTTTTGG
GCCAATCTTGATTTGAAGACTGGGAGACGATGTGGGATTTTGAAAACATG
TGGAATATCTTACTCAGGTTTGATTTTTTGCTTTAGTCGGTAAACCTCGA
CTCTCGGAACTATGCATACGAGGGGGAGTCGCGTGCCGCGCTCCATAGGA
AAATCGTGCTGGTGGTGGTTATCGCAGGACAACGAGCAACAAAAACCCGA
CCAGATTCGGTTTGTGGGCCATGTTTTTTTCGTCGATGCTCGTCGAAAAT
TGTTAGTATGAAATTCGGGATTTGGGTAGAGCTGTTCATATCTAGTATCA
GATAACTGGTCAAAAAATAGGTCCTCAGGATATGCGAGCAAGGTTTTCAA
CAGGGGGGCACGGGGGGGAGGTGGATGGACCAAACGGTTGGGACACGGCT
GATTGCTCGTGGTCTCTTGAACATGCACTCACCACAGGCGAATGTACCAG
AATTTTTGTACAAAGCACGAGCGCTAAGAAGTGCAATGGAGAACACAGAA
TCCTCTGCGGTTGTAGGGGGAGATTGGAGAGGGGTCAGTAAAAGTGGAGG
CTCGACTTGAGCACGCACACAGTAGCATGGCGTAGCAGGGTCCAGGACCT
TGCGATGTTGGAAAGGATCCCGAAAGTGAGAGATAGATGCAAGGGTAGGG
GAAGTCGAAACGTCAGAGCTCTGTGTCTCTTGGAAGAAAGACGTTGTACA
ACAAGGCGCACGGCGTGGCGGGGCTCGGTCTTGTCCAGGGTAACCCTCCG
CAGCACGTTCTTTGGCGGATGAAGCCGGCATGCCCTTCGTTACAATTTTC
TGCACCAAGGCGGGTGCGTTTGTACGTGCGGGTCTTCTTTTTTAAGTTGG
ATTGTATAGGCTTTTTTTGGTGTCATGTAGTTTGGAGGGGTGGAAAGGAA
TGATTTGACCCATCAGACTGTTGTTAGGAGCTTCGAGGGTGTCGTCGATT
TCTGTTTTTTTGTGAGAGATTGCATGTGAAGCTCTTCTTCCAAATACTCC
GGGGTGCGGAGAGGAGCCCACCTGATCGACTGGAGAAACCTGACGATGAC
CGACCCTCGGCGTGATAGGGTTGCGAGCGGTGTAGCAAGTTGTTTGTGGT
GGTCGTGGTGCTCCTGCAGCGTCGGTAGGGGCCAAGACGTAGGATCCCAG
CCAGAGCGATGGAAGGCTTTCAGCTTCTTCTTTTTGTGGGACTGCATTTC
GGGCGCGGCATGTTTGTTCTTCCTCTGCTCCACACACGTGGGCACTTCAT
GTTGATAGAATGAAGTTCTCTTTGTGGCAGAGCACATGTAGGTCTCCGTT
ATTTTGTTCCTTCTGCCCTTTTTTCAGCGTGTGTTCGACCGGGGATAGTC
GCTTCCCGCTGTTGAAGAGAAATGGAGCAAGACCTGCTGGAGAGAGCCCT
TTCTACTTCGGAGAGAACAACGACAGCGCATCAACAACCAAGACCACAGC
CAGTGCCAGTGCCCGCCCTCTTGAGAATCGGAGAGGAATTGCCGTTCTTT
CAACTGACAAAAAGGCCGAGGTTCAAGTTGCTAGTGCAGTTCTAGGTCAG
GTCCATTAACGCACGATTACGCTGGAGCCTGTTTCTTTGTAGCCCG

Coding sequence (CDS) from alignment at Scaffold_30:68667..74412+

>EsuBft1001_6a-0001 ID=EsuBft1001_6a-0001|Name=EsuBft1001_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=405bp|location=Sequence derived from alignment at Scaffold_30:68667..74412+ (Ectocarpus subulatus male Bft15b)
ATGAACCCTGTGAGATACGCGCCTCTTTGCGGTGTTCTGTGTCACGGCAG
TCTTCCCCTAGGGGCCATGTTTTCGCTGGTGGTTGTCTTGGCGGGGTCGG
TTGCTTCTGCCGACACAACCGGCAGCATTTCGGCGCAGACTACTAGCGGC
AACGCCGGTCTCCGCTCAGGCAAGGCATGCGATCCCGGGGACGCCGACTG
CCTCGGAGACGAAAGGGACGACTCCAGCTTCCTCGGCTTCGCATGCATCT
GTTACATGGTCTCACTGTTTGTGGTGTTTCGCACCTTGCGGGTTGCTGCG
ATGTGGGTGAGAGGAACTGCAATACTCGTCCGTCTATGGGCTAGGGAGAG
GGGGCTTATGGTCCGTCCAGGACGTCAGTTCCAAGGGTTGATCATCTGGC
CATAA