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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
ProteomeId | EsuBft1001_6 |
Protein domains | CYTOPLASMIC_DOMAIN |
Protein domains | TMhelix |
Protein domains | SignalP-TM |
Protein domains | SIGNAL_PEPTIDE_C_REGION |
Protein domains | NON_CYTOPLASMIC_DOMAIN |
Protein domains | SignalP-noTM |
Protein domains | SIGNAL_PEPTIDE_N_REGION |
Protein domains | SIGNAL_PEPTIDE_H_REGION |
Protein domains | TRANSMEMBRANE |
Protein domains | SIGNAL_PEPTIDE |
Owner | apollo_admin@sb-roscoff.fr |
Nb exon | 4 |
Length | 235 |
Hectar predicted targeting category | signal peptide |
Date last modified | 2016-06-13 |
Date creation | 2016-06-13 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1001_6a-0001 ID=EsuBft1001_6a-0001|Name=EsuBft1001_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2350bp|location=Sequence derived from alignment at Scaffold_30:68667..74412+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TGCCAACATACACAACGCAAAAACGCCCGAGAGCGAGAGGGTGTGGGGAG CAAAGGGCGCCTCCTTTGCAAAGAACTCTGCAGCATCAGGGAGGGAGAGC AATTAAGACTTTAGTTCCTGTGGCGACGACGGGCGGGGTACGACAAGTGC AAAGCGCAGGTGTGCTTGTTGCGTGGACACGGTACGAGATTCATACGCTG CAGCCATGAACCCTGTGAGATACGCGCCTCTTTGCGGTGTTCTGTGTCAC GGCAGTCTTCCCCTAGGGGCCATGTTTTCGCTGGTGGTTGTCTTGGCGGG GTCGGTTGCTTCTGCCGACACAACCGGCAGCATTTCGGCGCAGACTACTA GCGGCAACGCCGGTCTCCGCTCAGGCAAGGCATGCGATCCCGGGGACGCC GACTGCCTCGGAGACGAAAGGGACGACTCCAGCTTCCTCGGCTTCGCATG CATCTGTTACATGGTCTCACTGTTTGTGGTGTTTCGCACCTTGCGGGTTG CTGCGATGTGGGTGAGAGGAACTGCAATACTCGTCCGTCTATGGGCTAGG GAGAGGGGGCTTATGGTCCGTCCAGGACGTCAGTTCCAAGGGTTGATCAT CTGGCCATAACTTTCAAGACCATATTTTCAAACTAGGCGGGAGTCCACCC GTTCTACAAGTGATCCCCGCGTCGAGGCAGACGACACAGGTTTCGAACTA TAACTTTGCCAGGAAAAACAGGCACGCGAAATATTTAGTTCAATTCTTTT TTGGGCCAATCTTGATTTGAAGACTGGGAGACGATGTGGGATTTTGAAAA CATGTGGAATATCTTACTCAGGTTTGATTTTTTGCTTTAGTCGGTAAACC TCGACTCTCGGAACTATGCATACGAGGGGGAGTCGCGTGCCGCGCTCCAT AGGAAAATCGTGCTGGTGGTGGTTATCGCAGGACAACGAGCAACAAAAAC CCGACCAGATTCGGTTTGTGGGCCATGTTTTTTTCGTCGATGCTCGTCGA AAATTGTTAGTATGAAATTCGGGATTTGGGTAGAGCTGTTCATATCTAGT ATCAGATAACTGGTCAAAAAATAGGTCCTCAGGATATGCGAGCAAGGTTT TCAACAGGGGGGCACGGGGGGGAGGTGGATGGACCAAACGGTTGGGACAC GGCTGATTGCTCGTGGTCTCTTGAACATGCACTCACCACAGGCGAATGTA CCAGAATTTTTGTACAAAGCACGAGCGCTAAGAAGTGCAATGGAGAACAC AGAATCCTCTGCGGTTGTAGGGGGAGATTGGAGAGGGGTCAGTAAAAGTG GAGGCTCGACTTGAGCACGCACACAGTAGCATGGCGTAGCAGGGTCCAGG ACCTTGCGATGTTGGAAAGGATCCCGAAAGTGAGAGATAGATGCAAGGGT AGGGGAAGTCGAAACGTCAGAGCTCTGTGTCTCTTGGAAGAAAGACGTTG TACAACAAGGCGCACGGCGTGGCGGGGCTCGGTCTTGTCCAGGGTAACCC TCCGCAGCACGTTCTTTGGCGGATGAAGCCGGCATGCCCTTCGTTACAAT TTTCTGCACCAAGGCGGGTGCGTTTGTACGTGCGGGTCTTCTTTTTTAAG TTGGATTGTATAGGCTTTTTTTGGTGTCATGTAGTTTGGAGGGGTGGAAA GGAATGATTTGACCCATCAGACTGTTGTTAGGAGCTTCGAGGGTGTCGTC GATTTCTGTTTTTTTGTGAGAGATTGCATGTGAAGCTCTTCTTCCAAATA CTCCGGGGTGCGGAGAGGAGCCCACCTGATCGACTGGAGAAACCTGACGA TGACCGACCCTCGGCGTGATAGGGTTGCGAGCGGTGTAGCAAGTTGTTTG TGGTGGTCGTGGTGCTCCTGCAGCGTCGGTAGGGGCCAAGACGTAGGATC CCAGCCAGAGCGATGGAAGGCTTTCAGCTTCTTCTTTTTGTGGGACTGCA TTTCGGGCGCGGCATGTTTGTTCTTCCTCTGCTCCACACACGTGGGCACT TCATGTTGATAGAATGAAGTTCTCTTTGTGGCAGAGCACATGTAGGTCTC CGTTATTTTGTTCCTTCTGCCCTTTTTTCAGCGTGTGTTCGACCGGGGAT AGTCGCTTCCCGCTGTTGAAGAGAAATGGAGCAAGACCTGCTGGAGAGAG CCCTTTCTACTTCGGAGAGAACAACGACAGCGCATCAACAACCAAGACCA CAGCCAGTGCCAGTGCCCGCCCTCTTGAGAATCGGAGAGGAATTGCCGTT CTTTCAACTGACAAAAAGGCCGAGGTTCAAGTTGCTAGTGCAGTTCTAGG TCAGGTCCATTAACGCACGATTACGCTGGAGCCTGTTTCTTTGTAGCCCG back to topprotein sequence of EsuBft1001_6a-0001 >EsuBft1001_6 ID=EsuBft1001_6|Name=EsuBft1001_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=134bp
MNPVRYAPLCGVLCHGSLPLGAMFSLVVVLAGSVASADTTGSISAQTTSG NAGLRSGKACDPGDADCLGDERDDSSFLGFACICYMVSLFVVFRTLRVAA MWVRGTAILVRLWARERGLMVRPGRQFQGLIIWP back to topmRNA from alignment at Scaffold_30:68667..74412+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1001_6a-0001 ID=EsuBft1001_6a-0001|Name=EsuBft1001_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5746bp|location=Sequence derived from alignment at Scaffold_30:68667..74412+ (Ectocarpus subulatus male Bft15b) TGCCAACATACACAACGCAAAAACGCCCGAGAGCGAGAGGGTGTGGGGAG
CAAAGGGCGCCTCCTTTGCAAAGAACTCTGCAGCATCAGGGAGGGAGAGC
AATTAAGACTTTAGTTCCTGTGGCGACGACGGGCGGGGTACGACAAGTGC
AAAGCGCAGGTATGCAGCCACCACCAGCCGGTCTGAAGACGGCAATTTTA
CCCAGGGATTAGTTTCAGCGGCAACGTGATTTGGAACAACGAGAGAGGTC
GCCCAGGGCAAAATGGACGAGAAGGGAAAGGGGGGCAACGAGGAGTAGAG
CGCTTGTAACCCGTCCAAGCCTGCCTTCTCAATATTTGCATCGGTCGCGG
CGTAGATAGGCTGGTTTACCGAGGCTGAATGTTTTTTTGAAGAGCGAGGG
GGTCATCTCGTCACCCGCTCGTGCTGTCTCTCTTTCTCTCTGCCGGGCCG
GCGATGAGGGGCATCGCGCCCCAAGCACGGCTCGACTCTGTCAGCTATGG
GTTTTATTGTCCCGAGCACTAGCTTGGTACGTCAGATTCCCCACACAAGG
GCAAGAGTGCCGCCTTTCAGGTGTGGGACGAAAGGTGGTGCGTTATTATT
CTCCATTAGGATACATCCCGCCCAAAACGGAGACGGACATTGGGGGTTAA
GTGGGGGCGGCAAGATGTATGGTTGACGGCAACACACACAGCTCGTCTGC
ACGTATGGCAGCGCGAGGCAAGAGTGTACATAGTTTACGCAAGGGGCCTC
TTGTTGTATCAGAAACTGCTAATATCTCCCAACGCGAGACAATAACAGAG
TACAACAACATGACATGGACGGGTTATACTGCTATCGGTGCTTGGGTGTA
CAGGCGCTCCGACTTCACTTCCTCTCTGTTCCAGCCTACAAAAGACCTTG
TTAATGCATGTATTACTCTACGCTGCGGCTGCATTTCCTCTGTTCCAGCC
AAGCAAAGTTCACTTTGGGTCTTAGGTCTCTAGGAATCTGCACCCTTGGG
TGGTTCCTTGGGGTCACTGGGTGGGAGTAAAGAACAGGCCGAGGATAAAA
CGGGGTGGGGCGGCGCACGGTCCTTTGTTCCCCACATTCGCGTGGAATAT
GGTGTCAGCGTTTGGGCACTTGAGGCGCAACAACAAAAGTGGTGCCGATA
CACCGATTCTAAACTTGATGTGGAGACGGAGCAGCCTGGGAAGGGGGTTT
GAGGACAGGCGGGAGTGGTCCATCACCTAGGTTTCCCCCTCTCAAGCAAC
ACCGATATGGTCGAGAGCACTTGACAAGTGGAACCATGAGGCCTTGTAAC
CGTTATCTCTAGTATGTGGTGTAGTACGAGTTGATGGTCCCGGTAAAGGG
CGGTTGACCTCCGGTACACGCGTAACTGAGCATTTTGAACCTCAACCTGC
AACCACCCAAACGAAGGAAGTTGGGCGTCTTCGCAGGGCCAACCAACGGC
AGGGAAACTGCACGCACAAAAGGAAGTGATTCTCAAATTCATGATAATTG
CACCCCAACAACTGAAACAGAAAAATGTATATGAAACGTTACATGTAACA
CAAGCAACCATTTCCATTGCACTGCATGTTGTCTGTTTTCGTCCGCGGCG
TTGGCAACCTTGATGCGGGAGTGTGATGATGAAGGGCCGTCCCCGTGCGC
TTTGCGGCAGAAGCCCGTGTTTCGAACTACTGTAAAAAACCGTTTTTAAG
TCGGGGGGTGCCCGATGATGAGGCTTTCGTCCTCATTCTTTTTTCGGTCC
GTTCGATTGTCCTTGAAACCGGCCATCCATGCTGCCGAACGCCCAAATCG
CGGGGCACCGCCGTCTCCCCCACCATTGGTTGCCCCAGGTGTGCTTGTTG
CGTGGACACGGTACGAGATTCATACGCTGCAGCCATGAACCCTGTGAGAT
ACGCGCCTCTTTGCGGGTAAGAAAGACGATATCATGCCTTCGATTTAGTA
CGTTATTTTAGTGGTAAGCTGATCCAGATCTACCACTTTCCATAATGAAA
ACGCAACTTGTTTTCGATCATCCCTCGGTAGTTTCGTGTCGAACGGTAGG
CGCGCAAGTAGTGACATCACATGTATATATCCCACCAACCACCAGAACAC
CCGCGTGCAAGCAGTCGCATTTGCATGTGCACGTCTCACCACCAGCGGCC
GGGGTCATGAGCACGGATCCCGAGCACGCTCGCGAAGCAAACATACTGCC
GCTGTTAATGAACGTTTACCGTCGGTGCGTGTTTCAGCGTAGTCTCTACG
TAAAATATGACATGGGTGCCCTGGCGTACATACATACGTGTAGTTCCAAC
CTGCCCTCCGCCATGCCCCCATAAGTGTTCTGTGTCACGGCAGTCTTCCC
CTAGGGGCCATGTTTTCGCTGGTGGTTGTCTTGGCGGGGTCGGTTGCTTC
TGCCGACACAACCGGCAGCATTTCGGCGCAGACTACTAGCGGCAACGCCG
GTCTCCGCTCAGGTAGGCTCCACAACGAGCAGACGCTCGTTGGATTGTCA
TCGTGTTTTGGCTCGGGGGGGAGCCCTGTCCCTTGCTGCTGCGTTCGCCC
GAGATGGAAGCCTTTCTTCAGTCGTTGACCCACCGGGAGATGAAAGCTCC
CGACTGCGTAACCGACTAAATAGGTATTTCGTCATGTCGTGTTCGTCTCG
CGGCTGAGCATATCATCGTGACGAATAAAGTCTCTAACTCACGCTGGATT
TGTTGTGTTGTTGAGCGTTGTCTATACCTCGAGGCATAGCTCTGGCCGCC
GTCCGTCCTTTGGTCGAGGAACGGGCGTCATTTTCCGTTATGTCCGACCT
CCCGTGCAGTCGCATCACAGGTGGAGGTCCATCTCCCCTTTCCGAATATG
CCGGATGCCGGCGCCCGCTTGTGGAGACCTTGTCTAGGTCGACCTCCTTG
GAAATCACAACCAAGGCCACGAAAGGGGGGAACGAGGTATTTTCGAGGCC
TTGGTTGTGATTTCCAAGGAGGTCGACCTTGACAAGGCCTCCACAAGGGG
GTGCGGGCATCCGACATTTTGGGGAAGGGGAGTCGACCTTCACCTGTGCA
GGCAGGCATCAGTGCCGGCTGGTTGTGAACGCTGACACGCAGTGACATTG
AGTGAAATTGGGCAAACCGGAAACACAAGCGCACTAGCCAGTGTCCCCAA
CAACACGCCTCGCGTGATACGCCCCTCTCAAAGAGCCGCGCTCCGATGAC
CACATGTCAAGTGCTTGAAAAAACCGTCGAGTGAGATGATGCTCATGTGG
CATGATGAACGCGGATATGATGATGATGACGTCACCAGGCAAGGCATGCG
ATCCCGGGGACGCCGACTGCCTCGGAGACGAAAGGGACGACTCCAGCTTC
CTCGGCTTCGCATGCATCTGTTACATGGTCTCACTGTTTGTGGTGAGAAG
AAAGAGTGTGGCGCCCTCGTGCGACCCAGCTTTTTTTACTGGAGCTTGTC
CAAATGTTGCATTGGCGGAAAGTTGTTATCTTTTTGTCTTGTGGCCTTGT
TGCCACGTTCACACAGGCAGGGCCCCGTCGCGTCTCTTTGCTCGCGTGAG
GCTTCTGTTCGATTTCTCGAATGGTGTAACGGCCAAATCGTTCAACACTT
GTTTTCGCGCCGGCCCAAGGTACGTAAGTCCAGGGATGTTCACGGTGCGG
TTTTTTTCATCTGGGAATGTCACGGTGCGGTGCGGTTCCTTCCCATTTCG
AGACAAAAAAAAACGCACGGCACCACACCGTACCGTGACCATGAGATACA
ATACAAAAAATGGCACTGCGGACAGTGCGGTTCAATATGGTGTGGTGAAC
ACCCCTGAAAATATTGTTCTCCCGCCCCGCTTTCCCTCGTGCCCGGTCGT
GCTTCTCGTCGGCTCTCGCGACAGGTGTTTCGCACCTTGCGGGTTGCTGC
GATGTGGGTGAGAGGAACTGCAATACTCGTCCGTCTATGGGCTAGGGAGA
GGGGGCTTATGGTCCGTCCAGGACGTCAGTTCCAAGGGTTGATCATCTGG
CCATAACTTTCAAGACCATATTTTCAAACTAGGCGGGAGTCCACCCGTTC
TACAAGTGATCCCCGCGTCGAGGCAGACGACACAGGTTTCGAACTATAAC
TTTGCCAGGAAAAACAGGCACGCGAAATATTTAGTTCAATTCTTTTTTGG
GCCAATCTTGATTTGAAGACTGGGAGACGATGTGGGATTTTGAAAACATG
TGGAATATCTTACTCAGGTTTGATTTTTTGCTTTAGTCGGTAAACCTCGA
CTCTCGGAACTATGCATACGAGGGGGAGTCGCGTGCCGCGCTCCATAGGA
AAATCGTGCTGGTGGTGGTTATCGCAGGACAACGAGCAACAAAAACCCGA
CCAGATTCGGTTTGTGGGCCATGTTTTTTTCGTCGATGCTCGTCGAAAAT
TGTTAGTATGAAATTCGGGATTTGGGTAGAGCTGTTCATATCTAGTATCA
GATAACTGGTCAAAAAATAGGTCCTCAGGATATGCGAGCAAGGTTTTCAA
CAGGGGGGCACGGGGGGGAGGTGGATGGACCAAACGGTTGGGACACGGCT
GATTGCTCGTGGTCTCTTGAACATGCACTCACCACAGGCGAATGTACCAG
AATTTTTGTACAAAGCACGAGCGCTAAGAAGTGCAATGGAGAACACAGAA
TCCTCTGCGGTTGTAGGGGGAGATTGGAGAGGGGTCAGTAAAAGTGGAGG
CTCGACTTGAGCACGCACACAGTAGCATGGCGTAGCAGGGTCCAGGACCT
TGCGATGTTGGAAAGGATCCCGAAAGTGAGAGATAGATGCAAGGGTAGGG
GAAGTCGAAACGTCAGAGCTCTGTGTCTCTTGGAAGAAAGACGTTGTACA
ACAAGGCGCACGGCGTGGCGGGGCTCGGTCTTGTCCAGGGTAACCCTCCG
CAGCACGTTCTTTGGCGGATGAAGCCGGCATGCCCTTCGTTACAATTTTC
TGCACCAAGGCGGGTGCGTTTGTACGTGCGGGTCTTCTTTTTTAAGTTGG
ATTGTATAGGCTTTTTTTGGTGTCATGTAGTTTGGAGGGGTGGAAAGGAA
TGATTTGACCCATCAGACTGTTGTTAGGAGCTTCGAGGGTGTCGTCGATT
TCTGTTTTTTTGTGAGAGATTGCATGTGAAGCTCTTCTTCCAAATACTCC
GGGGTGCGGAGAGGAGCCCACCTGATCGACTGGAGAAACCTGACGATGAC
CGACCCTCGGCGTGATAGGGTTGCGAGCGGTGTAGCAAGTTGTTTGTGGT
GGTCGTGGTGCTCCTGCAGCGTCGGTAGGGGCCAAGACGTAGGATCCCAG
CCAGAGCGATGGAAGGCTTTCAGCTTCTTCTTTTTGTGGGACTGCATTTC
GGGCGCGGCATGTTTGTTCTTCCTCTGCTCCACACACGTGGGCACTTCAT
GTTGATAGAATGAAGTTCTCTTTGTGGCAGAGCACATGTAGGTCTCCGTT
ATTTTGTTCCTTCTGCCCTTTTTTCAGCGTGTGTTCGACCGGGGATAGTC
GCTTCCCGCTGTTGAAGAGAAATGGAGCAAGACCTGCTGGAGAGAGCCCT
TTCTACTTCGGAGAGAACAACGACAGCGCATCAACAACCAAGACCACAGC
CAGTGCCAGTGCCCGCCCTCTTGAGAATCGGAGAGGAATTGCCGTTCTTT
CAACTGACAAAAAGGCCGAGGTTCAAGTTGCTAGTGCAGTTCTAGGTCAG
GTCCATTAACGCACGATTACGCTGGAGCCTGTTTCTTTGTAGCCCG back to topCoding sequence (CDS) from alignment at Scaffold_30:68667..74412+ >EsuBft1001_6a-0001 ID=EsuBft1001_6a-0001|Name=EsuBft1001_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=405bp|location=Sequence derived from alignment at Scaffold_30:68667..74412+ (Ectocarpus subulatus male Bft15b) ATGAACCCTGTGAGATACGCGCCTCTTTGCGGTGTTCTGTGTCACGGCAG TCTTCCCCTAGGGGCCATGTTTTCGCTGGTGGTTGTCTTGGCGGGGTCGG TTGCTTCTGCCGACACAACCGGCAGCATTTCGGCGCAGACTACTAGCGGC AACGCCGGTCTCCGCTCAGGCAAGGCATGCGATCCCGGGGACGCCGACTG CCTCGGAGACGAAAGGGACGACTCCAGCTTCCTCGGCTTCGCATGCATCT GTTACATGGTCTCACTGTTTGTGGTGTTTCGCACCTTGCGGGTTGCTGCG ATGTGGGTGAGAGGAACTGCAATACTCGTCCGTCTATGGGCTAGGGAGAG GGGGCTTATGGTCCGTCCAGGACGTCAGTTCCAAGGGTTGATCATCTGGC CATAA back to top
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