|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7G873 |
| ProteomeId | EsuBft1001_4 |
| Protein domains | SignalP-noTM |
| Protein domains | PTHR19446 |
| Protein domains | IPR000477 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 5 |
| Max annot lvl | 2759|Eukaryota |
| Length | 103 |
| Evalue | 4.93e-71 |
| EggNOG OGs | COG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| KEGG rclass | RC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496 |
| KEGG ko | ko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437 |
| KEGG Reaction | R00851,R03875,R03938,R04866,R04867,R09380 |
| KEGG Pathway | ko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202 |
| KEGG Module | M00089 |
| EC | 2.1.1.43,2.3.1.15,3.6.4.12 |
| Description | acetylation-dependent protein binding |
| COG category | BK |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1001_4a-0001 ID=EsuBft1001_4a-0001|Name=EsuBft1001_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1031bp|location=Sequence derived from alignment at Scaffold_30:82455..84593- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGAAGCTTGGGGGGAAGGGGATGATCCAGCTGATGGTACTGCTATACAA
TTGGNTCCAGATGGAGGGAAGGAGTGGGTGTGATAAGAGAGGAGACAAGA
CTGGCCCAGGACACTACAGGGGGATTAAACTGTTGAACACAGGAGGAAAA
GTGTTCTGTAAGCTGCTGAACTATAGGATAGTGGAAGTATTGGAGCAGGA
ACATAGCATTAGTGAGGGCCAGGCAGGTTTCCAAAAGAAGAGGGGGTGCG
TAGACCACGTGTTCACGGTAGGGAGAATCATCCAAGGTAAAAAGAGGGCG
GGAAAGCCGACGTACTGCTTTTTCCTGGACGTGAAAAAGGCATACCATAC
CGTGTGGAGAAATGGGCTGCGGAAGCAATTGTCCAAAAATTCGGTGTCAG
GAATGCTGTTTGCGGATGATTTTGTTGGTATGTCGGACACCCCTGAGGGA
CTGCAACTGCAAATTGACGCGGCGAAGAAGTTTACTGATAAGTGGAGATT
GTCTGCCAACGTTCAGAAGAGTGCCGTCATGGTATGCAACAAGGATAGGG
AGGAACCAGTAGAATGTAGATGGAAGTGGGGGATCGAGGAGATTGTAGTA
GTGGACCAGTACACATNGATTGAGGCGGCGAAGAAGTTTACTGCTAAGTG
GAGATTGTCTGCCAACGTTAAGAAGAGTGCCGTCATAACGAGGAAGACGA
CGAGTTCAAATGTGNTTTCCGAGAGAGAAGAACAGAATCTAAGGAAAGAA
TCCAAGGATAAGGAGGGTCTAGAAGTGTTCGGAATGTTGAAGGAAGGAAT
AGGGTTCAAGGATTACCTACATGGACCAATGGATGCAGGGACAAGGCTTG
AGGTCGAATTCACGACCGGGGACATAGGCCTTCGAGAACGTCGACGAAGA
CATAGGACGGTAGACGACGAAGACGACAAGTTCAAATGTGATTGCGGCTT
CGAAGACGAAGACCGTGTTCATGTAGACGCGGAATGTCAGTTGTATAGAA
GGAGAGGGTAGTGTGCATTACTGAGCTGGGA back to topprotein sequence of EsuBft1001_4a-0001 >EsuBft1001_4 ID=EsuBft1001_4|Name=EsuBft1001_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=336bp
MKLGGKGMIQLMVLLYNWXQMEGRSGCDKRGDKTGPGHYRGIKLLNTGGK
VFCKLLNYRIVEVLEQEHSISEGQAGFQKKRGCVDHVFTVGRIIQGKKRA
GKPTYCFFLDVKKAYHTVWRNGLRKQLSKNSVSGMLFADDFVGMSDTPEG
LQLQIDAAKKFTDKWRLSANVQKSAVMVCNKDREEPVECRWKWGIEEIVV
VDQYTXIEAAKKFTAKWRLSANVKKSAVITRKTTSSNVXSEREEQNLRKE
SKDKEGLEVFGMLKEGIGFKDYLHGPMDAGTRLEVEFTTGDIGLRERRRR
HRTVDDEDDKFKCDCGFEDEDRVHVDAECQLYRRRG back to topmRNA from alignment at Scaffold_30:82455..84593- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1001_4a-0001 ID=EsuBft1001_4a-0001|Name=EsuBft1001_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2139bp|location=Sequence derived from alignment at Scaffold_30:82455..84593- (Ectocarpus subulatus male Bft15b)
ATGAAGCTTGGGGGGAAGGGGATGATCCAGCTGATGGTACTGCTATACAA
TTGGNTCCAGGTAATGGTGCTGCTGTGCAATTGGGTGTAGAAAAACGAGT
ACGCGCCAAGTAGATGGAGGGAAGGAGTGGGTGTGATAAGAGAGGAGACA
AGACTGGCCCAGGACACTACAGGGGGATTAAACTGTTGAACACAGGAGGA
AAAGTGTTCTGTAAGCTGCTGAACTATAGGATAGTGGAAGTATTGGAGCA
GGAACATAGCATTAGTGAGGGCCAGGCAGGTTTCCAAAAGAAGAGGGGGT
GCGTAGACCACGTGTTCACGGTAGGGAGAATCATCCAAGGTAGAAAGAGG
GCGGGAAAGCCGACGTACTGCTTCTTCNNNNNNNNNNNNNNNNNNNNNNN
NNNNGAAGGAACATAGCATTAGTGAGGGCCAGGCAGGTTTCCGCAAGAAG
AGGGGGAACGTAGACCACGCATTTAGGGTAGGGAAAATTATCTAAGGTAA
AAAGAGGGCGGGAAAGCCGACGTACTGCTTTTTCCTGGACGTGAAAAAGG
CATACCATACCGTGTGGAGAAATGGGCTGCGGAAGCAATTGTCCAAGTAC
GGGATCAAGGGGAAAATGTGGAGAGTGCTGAGAAGATGACAGAGCGTACG
AAAAGCGCGGTCATGATAGACGGAGAACTGTATAAATTCTTCGACATTGA
GCAGGGGGTCCCACAAGGTTGCAAGCTGTCCCCGACATTGTTCCAGGTGT
TCATCAAAGTTCTGTTAGAAGTCGTAGAAGCAGTCCGGAAGGGAGAAAAC
GTAATGGACACAGAAATTCGGTGTCAGGAATGCTGTTTGCGGATGATTTT
GTTGGTATGTCGGACACCCCTGAGGGACTGCAACTGCAAATTGACGCGGC
GAAGAAGTTTACTGATAAGTGGAGATTGTCTGCCAACGTTCAGAAGAGTG
CCGTCATGGTATGCAACAAGGATAGGGAGGAACCAGTAGAATGTAGATGG
AAGTGGGGGATCGAGGAGATTGTAGTAGTGGACCAGTACACATNGATTGA
GGCGGCGAAGAAGTTTACTGCTAAGTGGAGATTGTCTGCCAACGTTAAGA
AGAGTGCCGTCATAGTATGCAACAAGGATAGGGAGGAACCAGTAGAATGT
AGATGGAAGTGGGGGATCGAGGAGATTGTAGTAGTGGACCAGTACACNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAAGAAG
GTAGTGAAATACCTCCAGGCGGCGCAGATGAAAGCAGCGAAAATCATCCT
AGGATTCTCCAAGCGCACAAGTAATGCAGCCGTGAGGGCAGAATTGGGGA
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGGTTCAAGGATTACCT
ACATGGACCAATGGATGCAGGGACAAGGCTTGAGGTCGAATTCACGACCG
GGGACATAGGCCTTCGAGAACGTCGACGAAGACATAGGACGGTAGACGAG
GAAGACGACGAGTTCAAATGTGNTTTCCGAGAGAGAAGAACAGAATCTAA
GGAAAGAATCCAAGGATAAGGAGGGTCTAGAAGTGTTCGGAATGTTGAAG
GAAGGAATAGGGTTCAAGGATTACCTACATGGACCAATGGATGCAGGGAC
AAGGCTTGAGGTCGAATTCACGACCGGGGACATAGGCCTTCGAGAACGTC
GACGAAGACATAGGACGGTAGACGACGAAGACGACAAGTTCAAATGTGAT
TGCGGCTTCGAAGACGAAGACCGTGTTCATGTAGACGCGGAATGTCAGTT
GTATAGAAGGAGAGGGTAGTGTGCATTACTGAGCTGGGA back to topCoding sequence (CDS) from alignment at Scaffold_30:82455..84593- >EsuBft1001_4a-0001 ID=EsuBft1001_4a-0001|Name=EsuBft1001_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1011bp|location=Sequence derived from alignment at Scaffold_30:82455..84593- (Ectocarpus subulatus male Bft15b)
ATGAAGCTTGGGGGGAAGGGGATGATCCAGCTGATGGTACTGCTATACAA
TTGGNTCCAGATGGAGGGAAGGAGTGGGTGTGATAAGAGAGGAGACAAGA
CTGGCCCAGGACACTACAGGGGGATTAAACTGTTGAACACAGGAGGAAAA
GTGTTCTGTAAGCTGCTGAACTATAGGATAGTGGAAGTATTGGAGCAGGA
ACATAGCATTAGTGAGGGCCAGGCAGGTTTCCAAAAGAAGAGGGGGTGCG
TAGACCACGTGTTCACGGTAGGGAGAATCATCCAAGGTAAAAAGAGGGCG
GGAAAGCCGACGTACTGCTTTTTCCTGGACGTGAAAAAGGCATACCATAC
CGTGTGGAGAAATGGGCTGCGGAAGCAATTGTCCAAAAATTCGGTGTCAG
GAATGCTGTTTGCGGATGATTTTGTTGGTATGTCGGACACCCCTGAGGGA
CTGCAACTGCAAATTGACGCGGCGAAGAAGTTTACTGATAAGTGGAGATT
GTCTGCCAACGTTCAGAAGAGTGCCGTCATGGTATGCAACAAGGATAGGG
AGGAACCAGTAGAATGTAGATGGAAGTGGGGGATCGAGGAGATTGTAGTA
GTGGACCAGTACACATNGATTGAGGCGGCGAAGAAGTTTACTGCTAAGTG
GAGATTGTCTGCCAACGTTAAGAAGAGTGCCGTCATAACGAGGAAGACGA
CGAGTTCAAATGTGNTTTCCGAGAGAGAAGAACAGAATCTAAGGAAAGAA
TCCAAGGATAAGGAGGGTCTAGAAGTGTTCGGAATGTTGAAGGAAGGAAT
AGGGTTCAAGGATTACCTACATGGACCAATGGATGCAGGGACAAGGCTTG
AGGTCGAATTCACGACCGGGGACATAGGCCTTCGAGAACGTCGACGAAGA
CATAGGACGGTAGACGACGAAGACGACAAGTTCAAATGTGATTGCGGCTT
CGAAGACGAAGACCGTGTTCATGTAGACGCGGAATGTCAGTTGTATAGAA
GGAGAGGGTAG back to top
|