EsuBft1001_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1001_4a-0001
Unique NameEsuBft1001_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_30contigScaffold_30:82455..84593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G873
ProteomeIdEsuBft1001_4
Protein domainsSignalP-noTM
Protein domainsPTHR19446
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2759|Eukaryota
Length103
Evalue4.93e-71
EggNOG OGsCOG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
KEGG rclassRC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG koko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG ReactionR00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathwayko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG ModuleM00089
EC2.1.1.43,2.3.1.15,3.6.4.12
Descriptionacetylation-dependent protein binding
COG categoryBK
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1001_4aEsuBft1001_4aEctocarpus subulatus male Bft15bgeneScaffold_30 82455..84593 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1001_4a-0001EsuBft1001_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_30 82475..84593 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1001_4a-0001-exonagat-exon-110318Ectocarpus subulatus male Bft15bexonScaffold_30 82455..82798 -
EsuBft1001_4a-0001-exonagat-exon-110320Ectocarpus subulatus male Bft15bexonScaffold_30 83480..83780 -
EsuBft1001_4a-0001-exonagat-exon-110319Ectocarpus subulatus male Bft15bexonScaffold_30 83998..84097 -
EsuBft1001_4a-0001-exonagat-exon-110321Ectocarpus subulatus male Bft15bexonScaffold_30 84255..84480 -
EsuBft1001_4a-0001-exonEsuBft1001_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_30 84534..84593 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1001_4a-0001-exonagat-three_prime_utr-8Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_30 82455..82474 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1001_4a-0001-cdsEsuBft1001_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_30 82475..82798 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1001_4a-0001 ID=EsuBft1001_4a-0001|Name=EsuBft1001_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1031bp|location=Sequence derived from alignment at Scaffold_30:82455..84593- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTTGGGGGGAAGGGGATGATCCAGCTGATGGTACTGCTATACAA
TTGGNTCCAGATGGAGGGAAGGAGTGGGTGTGATAAGAGAGGAGACAAGA
CTGGCCCAGGACACTACAGGGGGATTAAACTGTTGAACACAGGAGGAAAA
GTGTTCTGTAAGCTGCTGAACTATAGGATAGTGGAAGTATTGGAGCAGGA
ACATAGCATTAGTGAGGGCCAGGCAGGTTTCCAAAAGAAGAGGGGGTGCG
TAGACCACGTGTTCACGGTAGGGAGAATCATCCAAGGTAAAAAGAGGGCG
GGAAAGCCGACGTACTGCTTTTTCCTGGACGTGAAAAAGGCATACCATAC
CGTGTGGAGAAATGGGCTGCGGAAGCAATTGTCCAAAAATTCGGTGTCAG
GAATGCTGTTTGCGGATGATTTTGTTGGTATGTCGGACACCCCTGAGGGA
CTGCAACTGCAAATTGACGCGGCGAAGAAGTTTACTGATAAGTGGAGATT
GTCTGCCAACGTTCAGAAGAGTGCCGTCATGGTATGCAACAAGGATAGGG
AGGAACCAGTAGAATGTAGATGGAAGTGGGGGATCGAGGAGATTGTAGTA
GTGGACCAGTACACATNGATTGAGGCGGCGAAGAAGTTTACTGCTAAGTG
GAGATTGTCTGCCAACGTTAAGAAGAGTGCCGTCATAACGAGGAAGACGA
CGAGTTCAAATGTGNTTTCCGAGAGAGAAGAACAGAATCTAAGGAAAGAA
TCCAAGGATAAGGAGGGTCTAGAAGTGTTCGGAATGTTGAAGGAAGGAAT
AGGGTTCAAGGATTACCTACATGGACCAATGGATGCAGGGACAAGGCTTG
AGGTCGAATTCACGACCGGGGACATAGGCCTTCGAGAACGTCGACGAAGA
CATAGGACGGTAGACGACGAAGACGACAAGTTCAAATGTGATTGCGGCTT
CGAAGACGAAGACCGTGTTCATGTAGACGCGGAATGTCAGTTGTATAGAA
GGAGAGGGTAGTGTGCATTACTGAGCTGGGA
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protein sequence of EsuBft1001_4a-0001

>EsuBft1001_4 ID=EsuBft1001_4|Name=EsuBft1001_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=336bp
MKLGGKGMIQLMVLLYNWXQMEGRSGCDKRGDKTGPGHYRGIKLLNTGGK
VFCKLLNYRIVEVLEQEHSISEGQAGFQKKRGCVDHVFTVGRIIQGKKRA
GKPTYCFFLDVKKAYHTVWRNGLRKQLSKNSVSGMLFADDFVGMSDTPEG
LQLQIDAAKKFTDKWRLSANVQKSAVMVCNKDREEPVECRWKWGIEEIVV
VDQYTXIEAAKKFTAKWRLSANVKKSAVITRKTTSSNVXSEREEQNLRKE
SKDKEGLEVFGMLKEGIGFKDYLHGPMDAGTRLEVEFTTGDIGLRERRRR
HRTVDDEDDKFKCDCGFEDEDRVHVDAECQLYRRRG
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mRNA from alignment at Scaffold_30:82455..84593-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1001_4a-0001 ID=EsuBft1001_4a-0001|Name=EsuBft1001_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2139bp|location=Sequence derived from alignment at Scaffold_30:82455..84593- (Ectocarpus subulatus male Bft15b)
ATGAAGCTTGGGGGGAAGGGGATGATCCAGCTGATGGTACTGCTATACAA
TTGGNTCCAGGTAATGGTGCTGCTGTGCAATTGGGTGTAGAAAAACGAGT
ACGCGCCAAGTAGATGGAGGGAAGGAGTGGGTGTGATAAGAGAGGAGACA
AGACTGGCCCAGGACACTACAGGGGGATTAAACTGTTGAACACAGGAGGA
AAAGTGTTCTGTAAGCTGCTGAACTATAGGATAGTGGAAGTATTGGAGCA
GGAACATAGCATTAGTGAGGGCCAGGCAGGTTTCCAAAAGAAGAGGGGGT
GCGTAGACCACGTGTTCACGGTAGGGAGAATCATCCAAGGTAGAAAGAGG
GCGGGAAAGCCGACGTACTGCTTCTTCNNNNNNNNNNNNNNNNNNNNNNN
NNNNGAAGGAACATAGCATTAGTGAGGGCCAGGCAGGTTTCCGCAAGAAG
AGGGGGAACGTAGACCACGCATTTAGGGTAGGGAAAATTATCTAAGGTAA
AAAGAGGGCGGGAAAGCCGACGTACTGCTTTTTCCTGGACGTGAAAAAGG
CATACCATACCGTGTGGAGAAATGGGCTGCGGAAGCAATTGTCCAAGTAC
GGGATCAAGGGGAAAATGTGGAGAGTGCTGAGAAGATGACAGAGCGTACG
AAAAGCGCGGTCATGATAGACGGAGAACTGTATAAATTCTTCGACATTGA
GCAGGGGGTCCCACAAGGTTGCAAGCTGTCCCCGACATTGTTCCAGGTGT
TCATCAAAGTTCTGTTAGAAGTCGTAGAAGCAGTCCGGAAGGGAGAAAAC
GTAATGGACACAGAAATTCGGTGTCAGGAATGCTGTTTGCGGATGATTTT
GTTGGTATGTCGGACACCCCTGAGGGACTGCAACTGCAAATTGACGCGGC
GAAGAAGTTTACTGATAAGTGGAGATTGTCTGCCAACGTTCAGAAGAGTG
CCGTCATGGTATGCAACAAGGATAGGGAGGAACCAGTAGAATGTAGATGG
AAGTGGGGGATCGAGGAGATTGTAGTAGTGGACCAGTACACATNGATTGA
GGCGGCGAAGAAGTTTACTGCTAAGTGGAGATTGTCTGCCAACGTTAAGA
AGAGTGCCGTCATAGTATGCAACAAGGATAGGGAGGAACCAGTAGAATGT
AGATGGAAGTGGGGGATCGAGGAGATTGTAGTAGTGGACCAGTACACNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAAGAAG
GTAGTGAAATACCTCCAGGCGGCGCAGATGAAAGCAGCGAAAATCATCCT
AGGATTCTCCAAGCGCACAAGTAATGCAGCCGTGAGGGCAGAATTGGGGA
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGGTTCAAGGATTACCT
ACATGGACCAATGGATGCAGGGACAAGGCTTGAGGTCGAATTCACGACCG
GGGACATAGGCCTTCGAGAACGTCGACGAAGACATAGGACGGTAGACGAG
GAAGACGACGAGTTCAAATGTGNTTTCCGAGAGAGAAGAACAGAATCTAA
GGAAAGAATCCAAGGATAAGGAGGGTCTAGAAGTGTTCGGAATGTTGAAG
GAAGGAATAGGGTTCAAGGATTACCTACATGGACCAATGGATGCAGGGAC
AAGGCTTGAGGTCGAATTCACGACCGGGGACATAGGCCTTCGAGAACGTC
GACGAAGACATAGGACGGTAGACGACGAAGACGACAAGTTCAAATGTGAT
TGCGGCTTCGAAGACGAAGACCGTGTTCATGTAGACGCGGAATGTCAGTT
GTATAGAAGGAGAGGGTAGTGTGCATTACTGAGCTGGGA
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Coding sequence (CDS) from alignment at Scaffold_30:82455..84593-

>EsuBft1001_4a-0001 ID=EsuBft1001_4a-0001|Name=EsuBft1001_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1011bp|location=Sequence derived from alignment at Scaffold_30:82455..84593- (Ectocarpus subulatus male Bft15b)
ATGAAGCTTGGGGGGAAGGGGATGATCCAGCTGATGGTACTGCTATACAA
TTGGNTCCAGATGGAGGGAAGGAGTGGGTGTGATAAGAGAGGAGACAAGA
CTGGCCCAGGACACTACAGGGGGATTAAACTGTTGAACACAGGAGGAAAA
GTGTTCTGTAAGCTGCTGAACTATAGGATAGTGGAAGTATTGGAGCAGGA
ACATAGCATTAGTGAGGGCCAGGCAGGTTTCCAAAAGAAGAGGGGGTGCG
TAGACCACGTGTTCACGGTAGGGAGAATCATCCAAGGTAAAAAGAGGGCG
GGAAAGCCGACGTACTGCTTTTTCCTGGACGTGAAAAAGGCATACCATAC
CGTGTGGAGAAATGGGCTGCGGAAGCAATTGTCCAAAAATTCGGTGTCAG
GAATGCTGTTTGCGGATGATTTTGTTGGTATGTCGGACACCCCTGAGGGA
CTGCAACTGCAAATTGACGCGGCGAAGAAGTTTACTGATAAGTGGAGATT
GTCTGCCAACGTTCAGAAGAGTGCCGTCATGGTATGCAACAAGGATAGGG
AGGAACCAGTAGAATGTAGATGGAAGTGGGGGATCGAGGAGATTGTAGTA
GTGGACCAGTACACATNGATTGAGGCGGCGAAGAAGTTTACTGCTAAGTG
GAGATTGTCTGCCAACGTTAAGAAGAGTGCCGTCATAACGAGGAAGACGA
CGAGTTCAAATGTGNTTTCCGAGAGAGAAGAACAGAATCTAAGGAAAGAA
TCCAAGGATAAGGAGGGTCTAGAAGTGTTCGGAATGTTGAAGGAAGGAAT
AGGGTTCAAGGATTACCTACATGGACCAATGGATGCAGGGACAAGGCTTG
AGGTCGAATTCACGACCGGGGACATAGGCCTTCGAGAACGTCGACGAAGA
CATAGGACGGTAGACGACGAAGACGACAAGTTCAAATGTGATTGCGGCTT
CGAAGACGAAGACCGTGTTCATGTAGACGCGGAATGTCAGTTGTATAGAA
GGAGAGGGTAG
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