mRNA_Ecto-sp9_F_contig1045.431.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1045.431.1
Unique NamemRNA_Ecto-sp9_F_contig1045.431.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1045.431.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS36_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 8.250e-10
Identity = 45/92 (48.91%), Postives = 59/92 (64.13%), Query Frame = 2 
Query:    2 DETALTTGGQTPAYLLDRPALLHEPEKPYCSDEDMRRTRLLLARAEADRTWRRRSWLIMVRS--RASKTTANDETSGKGGGDSNESAGRAKD 271
            DETAL   G+TPA LLD     +E ++  CS+ ++ R R+LLARA ADR WRRR WL+M+RS  R +K T  DET     GD++E +  A D
Sbjct:  367 DETALNNAGKTPAGLLDEHD--NENDRTTCSEAEINRVRMLLARAPADRAWRRRCWLVMLRSFARTAKATT-DET-----GDAHEGSNDAGD 450
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BLAST of mRNA_Ecto-sp9_F_contig1045.431.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY1_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 2.840e-8
Identity = 35/75 (46.67%), Postives = 48/75 (64.00%), Query Frame = 2 
Query:    2 DETALTTGGQTPAYLLDRPALLHEPEKPYCSDEDMRRTRLLLARAEADRTWRRRSWLIMVRSRASKTTANDETSG 226
            DETAL    +TPA LLD     +E ++  CS+ ++ + RLL+ARA A+R WRRR WL+M+RS A    A  E +G
Sbjct:  285 DETALDNDSKTPADLLDEDD--NENDRTTCSEAEIEQVRLLMARAPANRAWRRRCWLVMLRSYAKTARATTEATG 357
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BLAST of mRNA_Ecto-sp9_F_contig1045.431.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW4_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 3.520e-8
Identity = 41/92 (44.57%), Postives = 55/92 (59.78%), Query Frame = 2 
Query:    2 DETALTTGGQTPAYLLDRPALLHEPEKPYCSDEDMRRTRLLLARAEADRTWRRRSWLIMVRSRASKTTANDETSGKGGGDSNESAGRAKDNC 277
            DETAL   G+TPA LLD     +E ++  CS+ ++ R RLLLARA AD+  RRR WL+M+RS A  T A  + +G     SN++  R    C
Sbjct:  581 DETALNNDGKTPADLLDEHD--NENDRTTCSEAEIERVRLLLARAPADQARRRRCWLVMLRSFARTTRATTDETGDAHEGSNDAGDRDXXXC 670
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BLAST of mRNA_Ecto-sp9_F_contig1045.431.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRS0_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 9.650e-8
Identity = 39/91 (42.86%), Postives = 51/91 (56.04%), Query Frame = 2 
Query:   29 QTPAYLLDRPALLHEPEKP--YCSDEDMRRTRLLLARAEADRTWRRRSWLIMVRSRASKTTANDETSGKGGGDSNESAGRAKDNCKVAKSE 295
            QTP  +LD     H+ E     CS+ +  R RLLLARA A+R WR R WL+M+RS A    AN + +G    DSN++  R    CK A+ E
Sbjct:  315 QTPVDMLDE----HDDENDGTTCSEAEFERVRLLLARAPANRAWRHRCWLVMLRSCAKTARANSDATGDADEDSNDARDRKVGKCKGARRE 401
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BLAST of mRNA_Ecto-sp9_F_contig1045.431.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ8_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 7.780e-7
Identity = 40/99 (40.40%), Postives = 54/99 (54.55%), Query Frame = 2 
Query:    2 DETALTTGGQTPA-YLLDRPALLHEPEKPYCSDEDMRRTRLLLARAEADRTWRRRSWLIMVRSRASKTTANDETSGKGGGDSNESAGRAKDNCKVAKSE 295
            DETA+   G TPA +L++     +      CS  ++ R RLLLARA A+R WRRR WL+M+RS A    A  + +G     SN+   R    CK A+ E
Sbjct:  308 DETAVHNDGNTPADWLVEN----NNENGTTCSTAEIGRVRLLLARAPANRAWRRRCWLVMLRSCAKTARATTDKTGDADEGSNDVGDRKDGKCKGARRE 402
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BLAST of mRNA_Ecto-sp9_F_contig1045.431.1 vs.
Match: EsV-1-8 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI8_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 2.580e-6
Identity = 34/69 (49.28%), Postives = 42/69 (60.87%), Query Frame = 2 
Query:    2 DETALTTGGQTPAYLLDR---PALLHEPEKPYCSDEDMRRTRLLLARAEADRTWRRRSWLIMVRSRASK 199
            DET L  GG +PA  L       + H P       +++ RTRLLL+RA ADR WRRR WL+M+RSR SK
Sbjct:   46 DETTLNYGGASPADFLGGRYGKVIGHNP----APQDEIDRTRLLLSRAPADRAWRRRGWLVMLRSRDSK 110
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BLAST of mRNA_Ecto-sp9_F_contig1045.431.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL7_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 8.670e-6
Identity = 39/96 (40.62%), Postives = 52/96 (54.17%), Query Frame = 2 
Query:    2 DETALTTGGQTPAYLLDRPALLHEPEKPYCSDEDMRRTRLLLARAEADRTWRRRSWLIMVRSRASKTTANDETSGKGGGDSNESAGRAKDNCKVAK 289
            DETA    G+TP  +L         + P+CS +++ R RLLL RA  DR WRRR WL+++RSR   T        KG  DS  S  +A+ N K A+
Sbjct:  370 DETARNKRGRTPLDVLGAT----RTDNPHCSPDEVDRARLLLVRAPTDRRWRRRGWLVVLRSR---TIVVAHRCAKGASDSGLSLCQARRNGKGAR 458
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BLAST of mRNA_Ecto-sp9_F_contig1045.431.1 vs.
Match: Inversin (protein alternative isoform n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G316_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.320e-5
Identity = 34/66 (51.52%), Postives = 37/66 (56.06%), Query Frame = 2 
Query:    2 DETALTTGGQTPAYLLDRPALLHEPEKPYCSDEDMRRTRLLLARAEADRTWRRRSWLIMVRSRASK 199
            DETAL   G+TPA L+D     HE              RLLLARA ADR WRRR WL+MV SR  K
Sbjct:  597 DETALDRDGKTPADLIDESRPQHEA------------VRLLLARAPADRAWRRRGWLVMVFSRTPK 650
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BLAST of mRNA_Ecto-sp9_F_contig1045.431.1 vs.
Match: Similar (to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE08_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 8.830e-5
Identity = 32/70 (45.71%), Postives = 41/70 (58.57%), Query Frame = 2 
Query:    5 ETALTTGGQTPAYLLDRPALLHE-----PEKPYCSDEDMRRTRLLLARAEADRTWRRRSWLIMVRSRASK 199
            ETAL T G+TP+  L R A         P        +M+R  +LLARA ADR WRRR WL+M+R+RA +
Sbjct:  335 ETALDTRGETPSDYLRRGAAAVASSNVTPRNSEKMQREMQRALVLLARAPADRAWRRRCWLVMLRARAGR 404
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1045.431.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
Ankyrin8.250e-1048.91repeat protein n=1 Tax=Ectocarpus siliculosus TaxI... [more]
Uncharacterized2.840e-846.67protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.520e-844.57protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Ankyrin9.650e-842.86repeat protein n=1 Tax=Ectocarpus siliculosus TaxI... [more]
Ankyrin7.780e-740.40repeat protein n=1 Tax=Ectocarpus siliculosus TaxI... [more]
EsV-1-82.580e-649.28n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]
Ankyrin8.670e-640.63repeat protein n=1 Tax=Ectocarpus siliculosus TaxI... [more]
Inversin1.320e-551.52protein alternative isoform n=1 Tax=Ectocarpus sil... [more]
Similar8.830e-545.71to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1045contigEcto-sp9_F_contig1045:26528..27263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size736
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1045.431.1prot_Ecto-sp9_F_contig1045.431.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1045 26631..27095 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928254.8433068-UTR-Ecto-sp9_F_contig1045:26527..266301622928254.8433068-UTR-Ecto-sp9_F_contig1045:26527..26630Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1045 26528..26630 +
1692277810.7154515-UTR-Ecto-sp9_F_contig1045:26527..266301692277810.7154515-UTR-Ecto-sp9_F_contig1045:26527..26630Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1045 26528..26630 +
1622928254.8728948-UTR-Ecto-sp9_F_contig1045:27095..272631622928254.8728948-UTR-Ecto-sp9_F_contig1045:27095..27263Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1045 27096..27263 +
1692277810.7336195-UTR-Ecto-sp9_F_contig1045:27095..272631692277810.7336195-UTR-Ecto-sp9_F_contig1045:27095..27263Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1045 27096..27263 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928254.8585923-CDS-Ecto-sp9_F_contig1045:26630..270951622928254.8585923-CDS-Ecto-sp9_F_contig1045:26630..27095Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1045 26631..27095 +
1692277810.7261534-CDS-Ecto-sp9_F_contig1045:26630..270951692277810.7261534-CDS-Ecto-sp9_F_contig1045:26630..27095Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1045 26631..27095 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1045.431.1

>prot_Ecto-sp9_F_contig1045.431.1 ID=prot_Ecto-sp9_F_contig1045.431.1|Name=mRNA_Ecto-sp9_F_contig1045.431.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=155bp
MRRTRLLLARAEADRTWRRRSWLIMVRSRASKTTANDETSGKGGGDSNES
AGRAKDNCKVAKSEGATGSVIQDVSGQAPNGGSGGGVGAKGADLSTWWRC
WWGLSWRACSVQSWVFFERGSKMKSLEALVRSEVLPQALVASDPGLSWVL
GVCW*
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mRNA from alignment at Ecto-sp9_F_contig1045:26528..27263+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1045.431.1 ID=mRNA_Ecto-sp9_F_contig1045.431.1|Name=mRNA_Ecto-sp9_F_contig1045.431.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=736bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1045:26528..27263+ (Ectocarpus species9 EcSCA_722f female)
AGACGAAACAGCCTTGACAACTGGTGGCCAAACCCCCGCGTATTTGCTTG
ACAGACCCGCACTCTTGCACGAGCCAGAGAAGCCATACTGTTCGGATGAA
GACATGAGGCGCACACGCCTGTTGTTGGCCCGGGCGGAGGCGGATAGAAC
GTGGCGTCGTCGGAGCTGGCTGATAATGGTCCGCTCGCGCGCCTCGAAGA
CGACAGCGAACGACGAAACAAGTGGCAAAGGCGGCGGTGATTCAAACGAA
TCTGCTGGCCGAGCAAAAGACAACTGTAAGGTTGCGAAATCTGAGGGCGC
CACAGGTTCCGTTATACAGGATGTGAGCGGGCAGGCTCCAAACGGCGGGA
GTGGAGGTGGAGTTGGAGCCAAGGGTGCGGACTTGAGCACGTGGTGGCGT
TGCTGGTGGGGCTTGAGCTGGAGGGCTTGTTCCGTACAGTCGTGGGTTTT
CTTTGAACGCGGGAGCAAGATGAAGAGCCTTGAAGCGTTGGTGAGGTCAG
AGGTGTTGCCGCAGGCTCTGGTGGCTAGCGATCCTGGACTAAGTTGGGTG
TTAGGCGTGTGCTGGTAGATGGGACTATCACCTCTCCCCGCCCCCAGGTT
CTTTTGCTGGAAAACCTGCCATAAGGCAAGACAATTAGCCGTAGAGCTGC
ATACAAACCCCTTGGCTTAGCTTGAGTTGGTGGCAGGGCTCTTCAGTTTG
TGTGTACGCCCCACGAATGTTCCTGTAACATGTCGT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1045:26528..27263+

>mRNA_Ecto-sp9_F_contig1045.431.1 ID=mRNA_Ecto-sp9_F_contig1045.431.1|Name=mRNA_Ecto-sp9_F_contig1045.431.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=930bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1045:26528..27263+ (Ectocarpus species9 EcSCA_722f female)
ATGAGGCGCACACGCCTGTTGTTGGCCCGGGCGGAGGCGGATAGAACGTG
GCGTCGTCGGAGCTGGCTGATAATGGTCCGCTCGCGCGCCTCGAAGACGA
CAGCGAACGACGAAACAAGTGGCAAAGGCGGCGGTGATTCAAACGAATCT
GCTGGCCGAGCAAAAGACAACTGTAAGGTTGCGAAATCTGAGGGCGCCAC
AGGTTCCGTTATACAGGATGTGAGCGGGCAGGCTCCAAACGGCGGGAGTG
GAGGTGGAGTTGGAGCCAAGGGTGCGGACTTGAGCACGTGGTGGCGTTGC
TGGTGGGGCTTGAGCTGGAGGGCTTGTTCCGTACAGTCGTGGGTTTTCTT
TGAACGCGGGAGCAAGATGAAGAGCCTTGAAGCGTTGGTGAGGTCAGAGG
TGTTGCCGCAGGCTCTGGTGGCTAGCGATCCTGGACTAAGTTGGGTGTTA
GGCGTGTGCTGGTAGATGAGGCGCACACGCCTGTTGTTGGCCCGGGCGGA
GGCGGATAGAACGTGGCGTCGTCGGAGCTGGCTGATAATGGTCCGCTCGC
GCGCCTCGAAGACGACAGCGAACGACGAAACAAGTGGCAAAGGCGGCGGT
GATTCAAACGAATCTGCTGGCCGAGCAAAAGACAACTGTAAGGTTGCGAA
ATCTGAGGGCGCCACAGGTTCCGTTATACAGGATGTGAGCGGGCAGGCTC
CAAACGGCGGGAGTGGAGGTGGAGTTGGAGCCAAGGGTGCGGACTTGAGC
ACGTGGTGGCGTTGCTGGTGGGGCTTGAGCTGGAGGGCTTGTTCCGTACA
GTCGTGGGTTTTCTTTGAACGCGGGAGCAAGATGAAGAGCCTTGAAGCGT
TGGTGAGGTCAGAGGTGTTGCCGCAGGCTCTGGTGGCTAGCGATCCTGGA
CTAAGTTGGGTGTTAGGCGTGTGCTGGTAG
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