mRNA_Ecto-sp9_F_contig10380.375.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10380.375.1
Unique NamemRNA_Ecto-sp9_F_contig10380.375.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10380.375.1 vs.
Match: Swi3 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0P4_9PHAE)

HSP 1 Score: 790 bits (2039), Expect = 3.230e-282
Identity = 489/591 (82.74%), Postives = 505/591 (85.45%), Query Frame = 1 
Query:    1 MSESEEERRPRPIGVADGSDEDSGMERTDAAGANNGTEPGRDSTGVAAPEEATTAKKVSNRPPAFSENHLVKEKGLWQVYKDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRSLLRELRDTERDRVLEAKYGREAVDDVHAQEAARLAAKESKTAAAEGDRAEEREDEELAGSRYAMEVDGDVGDEGKSDRQVAAEGSAAAMSDQVRQRIEANRRLALDRLRLKKQEAXXXXXXXXEKENDGGAVAVP----AANDGSGEVENLKEDLMDADGGGGPGDSFDDDEAVLADMEAEEMAARPVAAEASRGKNTVAEPGPAAVCTSPPSTLAVESEETAGALDEEQASPEPTIREDEAMEDAGSSASGANTAAAVVADDANDPAPASAAADGVARGGARAAGAGCAGSVDEASAKCAVAAARGGEPGTTAGEESGGELPPASEPGAPAPGVGGGRERDGANDEAASLGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ASFSSPAKCRAAAAAASGLPLSPLGSLFAGTDVSAEGGLAVAREPLGGLFSDENV 1755
            MSESEEERRPRPIGVADGS EDSGMERTDAAGANNGTEPG DSTGVAAPEE TTAKKVSNRPPAFSENHLVKEKGLWQVYKDFPQKC+YKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKL GRARTRSL+RELRDTERDRVLEAK+GREAVDDVH+QEAARLAAKESKTAAAEGDRAEEREDEE AGSRY MEVDGD GDEGKSDRQVAAEGSAAAMS+QVRQRIEANRRLALDRLR KK EA   XXXXX                AANDGS EVE+L+EDLMD DGGGGPGD FDDDEA LADME E+MAARPVAAEASR KNTVAEPGPA V TSP STLAVES+ETAGA+DEE A PEP+IREDEAMED GS ASGANTAAAVVADDA DPAP SAAADGVARGGARAAGAGCAG+VDEA A  A  AA GGEP  TAGEESGGELPPASEPG P PGVGGG++RDGANDEAASL T   XXXXXXXX              XXXXXXXX             ASFSSPAKCR+A AAASGLPLSPLG+LFAGTDVSAEGGLAV REPLGGLFSDENV
Sbjct:    1 MSESEEERRPRPIGVADGSGEDSGMERTDAAGANNGTEPGLDSTGVAAPEEVTTAKKVSNRPPAFSENHLVKEKGLWQVYKDFPQKCRYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLAGRARTRSLMRELRDTERDRVLEAKFGREAVDDVHSQEAARLAAKESKTAAAEGDRAEEREDEEFAGSRYTMEVDGDGGDEGKSDRQVAAEGSAAAMSEQVRQRIEANRRLALDRLRSKKHEASVAXXXXXXXXXXXXXXXXXXXXXAANDGSREVEDLEEDLMDVDGGGGPGDGFDDDEAALADMETEQMAARPVAAEASRRKNTVAEPGPAVVSTSPASTLAVESDETAGAVDEELAPPEPSIREDEAMEDTGSRASGANTAAAVVADDAKDPAPVSAAADGVARGGARAAGAGCAGNVDEAPATWAADAAGGGEPDATAGEESGGELPPASEPGTPGPGVGGGQDRDGANDEAASLRTMTAXXXXXXXXDGITGGAKVDDAVLXXXXXXXXAPEPVAAKGDEEGASFSSPAKCRSATAAASGLPLSPLGTLFAGTDVSAEGGLAVVREPLGGLFSDENV 591
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BLAST of mRNA_Ecto-sp9_F_contig10380.375.1 vs.
Match: Swi3 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKE8_ECTSI)

HSP 1 Score: 726 bits (1873), Expect = 4.910e-258
Identity = 464/586 (79.18%), Postives = 468/586 (79.86%), Query Frame = 1 
Query:    1 MSESEEERRPRPIGVADGSDEDSGMERTDAAGANNGTEPGRDSTGVAAPEEATTAKKVSNRPPAFSENHLVKEKGLWQVYKDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRSLLRELRDTERDRVLEAKYGREAVDDVHAQEAARLAAKESKTAAAEGDRAEEREDEELAGSRYAMEVDGDVGDEGKSDRQVAAEGSAAAMSDQVRQRIEANRRLALDRLRLKKQEAXXXXXXXXEKENDGGAVAVPAANDGSGEVENLKEDLMDADGGGGPGDSFDDDEAVLADMEAEEMAARPVAAEASRGKNTVAEPGPAAVCTSPPSTLAVESEETAGALDEEQASPEPTIREDEAMEDAGSSASGANTAAAVVADDANDPAPASAAADGVARGGARAAGAGCAGSVDEASAKCAVAAARGGEPGTTAGEESGGELPPASEPGAPAPGVGGGRERDGANDEAASLGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASFSSPAKCRAAAAA-ASGLPLSPLGSLFAGTDVSAEGGLAVAREPLGGLFSDENV 1755
            MSESEEERRPRPIGVADGSDEDSGMERTDAAGANNG+EPGRDSTGVAAPEEATTAKKVSNRPPAFSENHLVKEKGLWQ+YKDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLA RTEKLGGRARTRSLLRELRDTERDRVLEAKYGREAVDDVHAQEAARLAAKESKTAAAEGDR EEREDEELAGSRYAMEVDGD GDEGKSDRQVAAEGSAA MSDQVRQRIEANRRLALDRLRLKKQE XXXXXXXX              NDGS EVE+ +EDLMD DGGGGPGDSFDDDEA LADMEAEEMAARPVAAEASRGKNTVAEPGPAAV TSPPSTLAVE                                                              GARAAGAGCAGSVDEASAKCAVAAAR GEPGTTAGEESGGELPPASEP APAPGVGGGRERDGANDEAASLGT                        XXXXXXXXXXXXXXXXXXXXASFSSPAKCR      ASGLPLSPLGSLFAGTDVSAEGGLAVAREPLGGLFSDENV
Sbjct:    1 MSESEEERRPRPIGVADGSDEDSGMERTDAAGANNGSEPGRDSTGVAAPEEATTAKKVSNRPPAFSENHLVKEKGLWQIYKDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLACRTEKLGGRARTRSLLRELRDTERDRVLEAKYGREAVDDVHAQEAARLAAKESKTAAAEGDRVEEREDEELAGSRYAMEVDGDGGDEGKSDRQVAAEGSAATMSDQVRQRIEANRRLALDRLRLKKQEXXXXXXXXXXXXXXXXXXXXXXXNDGSREVEDPEEDLMDVDGGGGPGDSFDDDEAALADMEAEEMAARPVAAEASRGKNTVAEPGPAAVVTSPPSTLAVER-------------------------------------------------------------GARAAGAGCAGSVDEASAKCAVAAARSGEPGTTAGEESGGELPPASEPSAPAPGVGGGRERDGANDEAASLGTTAAASAAGADGITGGAKLDDAVLGXXXXXXXXXXXXXXXXXXXXASFSSPAKCRXXXXXXASGLPLSPLGSLFAGTDVSAEGGLAVAREPLGGLFSDENV 525
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BLAST of mRNA_Ecto-sp9_F_contig10380.375.1 vs.
Match: Swi3 (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM34_9STRA)

HSP 1 Score: 110 bits (276), Expect = 8.830e-22
Identity = 59/113 (52.21%), Postives = 76/113 (67.26%), Query Frame = 1 
Query:  148 EEATTAKK-VSNRPPAFSENHLVKEKGLWQVYKDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRSLLRELRDTERDRVLEAKYGREAVD 483
            EE   AKK    R P FSE  LV+ KGL ++  DFP++ +   +G+E EFL  LM  YKEWGYQLYP +AFEDLA R E LGG+ R R  L  +RD ERDR + A++G++AV+
Sbjct:   52 EEGKPAKKPAKRRAPPFSEVQLVEGKGLMKIRDDFPKRLKPCVKGKEREFLSRLMFLYKEWGYQLYPSLAFEDLAVRIETLGGKERVRGHLAMMRDEERDRCVRARHGKDAVE 164
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BLAST of mRNA_Ecto-sp9_F_contig10380.375.1 vs.
Match: Swi3 (domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397E7Y0_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 4.420e-13
Identity = 43/94 (45.74%), Postives = 54/94 (57.45%), Query Frame = 1 
Query:  169 KVSNRPPAFSENHLVKEKGLWQVYKDFPQKCQYK-GRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRSLLRELRDTERDR 447
            KV+ +   FSE HL+  +GL  VY  FP         G E E LR L+ AYKEW Y+LYPG+ FEDL  +TE L  +A   S + +LR  ER R
Sbjct:   48 KVTKKRATFSEQHLLGPRGLSLVYSTFPTHFNRAVTHGNEGEALRELITAYKEWAYELYPGLNFEDLVDKTEALAKKAAVSSFIADLRQQERKR 141
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10380.375.1 vs.
Match: Swi3 (domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BHD7_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.160e-12
Identity = 43/94 (45.74%), Postives = 54/94 (57.45%), Query Frame = 1 
Query:  169 KVSNRPPAFSENHLVKEKGLWQVYKDFPQKCQYK-GRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRSLLRELRDTERDR 447
            KV+ +   FSE HL+  +GL  VY  FP         G E E LR L+ AYKEW Y+LYPG+ FEDL  +TE L  +A   S + +LR  ER R
Sbjct:   48 KVTKKRATFSEQHLLGPRGLSLVYSTFPTHFNRAVTHGNEGEALRELITAYKEWAYELYPGLNFEDLVDKTEALAKKAAVSSFIADLRQQERKR 141
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10380.375.1 vs.
Match: Swi3 (domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VR31_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.640e-12
Identity = 48/133 (36.09%), Postives = 68/133 (51.13%), Query Frame = 1 
Query:   43 VADGSDEDSGMERTDAAGANNGTEPGRDSTGVAAPEEATTAKKVSNRPPAFSENHLVKEKGLWQVYKDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRSLLRELRDTER 441
             A G + D  + R D  GA+  T  G   T     + A +A     R     E+HLV  +G  +V++ FP +      GREA+ L  L+  YK+W + LYPG+ FED   RTE LG   + + L+ ELR+ ER
Sbjct:    2 AARGWERDGDLARRDDTGASTTTADGISGTHDGEGDAAGSAVVQKRRRNLLRESHLVSAEGFKKVHRTFPYQVSGDVSGREAQALASLINMYKQWAFDLYPGLNFEDFIDRTEMLGKGHQVQGLMTELREEER 134
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BLAST of mRNA_Ecto-sp9_F_contig10380.375.1 vs.
Match: Swi3 (domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SX14_9ARCH)

HSP 1 Score: 75.9 bits (185), Expect = 1.990e-12
Identity = 41/94 (43.62%), Postives = 59/94 (62.77%), Query Frame = 1 
Query:  166 KKVSNRPPAFSENHLVKEKGLWQVYKDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRSLLRELRDTERDR 447
            KK  N  P F E  LV   GL ++Y +FP + +Y+ + +E +FLR L+  YKEW +QL+PG++FED   +   L  ++R RS + ELRD ER R
Sbjct:   59 KKAKNAKP-FDEALLVGPHGLSRIYHEFPLRIRYQ-KNQEVQFLRQLLSLYKEWAFQLHPGLSFEDAILKISTLSHKSRVRSAVTELRDLERIR 150
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10380.375.1 vs.
Match: Swi3 (domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BUG3_HYAAE)

HSP 1 Score: 75.1 bits (183), Expect = 3.270e-12
Identity = 39/110 (35.45%), Postives = 60/110 (54.55%), Query Frame = 1 
Query:  154 ATTAKKVSNRPPAFSENHLVKEKGLWQVYKDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRSLLRELRDTERDRVLEAKYGREAVD 483
            A++      R     E+HL+  +G  +VY+ FP +      GREA  L  L+  YK+W Y LYPG+ FED   RTE L    + + L+ E+R+ ER + +E + G++  D
Sbjct:   39 ASSTPSKKRRRNLLRESHLLSAEGFKKVYRTFPYQVSSTVSGREAPALASLIKMYKQWAYDLYPGLNFEDFVDRTETLAKGHQVQGLMAEMREKERRKRVERRCGKDEED 148
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10380.375.1 vs.
Match: Swi3 (domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3STA2_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 6.280e-12
Identity = 37/95 (38.95%), Postives = 55/95 (57.89%), Query Frame = 1 
Query:  172 VSNRPPAFSENHLVKEKGLWQVYKDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRSLLRELRDTERDRVLE 456
            V  R     E+HLV  +GL +V++ FP +      GREA+ L  L+  YK+W + LYPG+ FED   R E LG   + + L+ +LR+ E+ + LE
Sbjct:    7 VQRRRNLLRESHLVSAEGLKKVHRTFPYQVSADVSGREAQALASLIKMYKQWAFDLYPGLNFEDFVERAEALGKSHQVQGLVADLREKEKLKALE 101
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10380.375.1 vs.
Match: Timeless-interacting (protein isoform x3 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1APB5_PLAHL)

HSP 1 Score: 73.6 bits (179), Expect = 1.120e-11
Identity = 42/107 (39.25%), Postives = 61/107 (57.01%), Query Frame = 1 
Query:  133 GVAAPEEATTAKKVSNRPPAFSENHLVKEKGLWQVYKDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRSLLRELRDTERDRVL 453
            GV AP    T K+  N      E+HL+  +G  +V++ FP +      GREA+ L  L+  YK+W + LYPG+ FED   RTE LG   + ++L+ ELR+ ER + L
Sbjct:   38 GVTAP--VGTQKRQRN---LLRESHLISAEGFQKVHRTFPYQVSADVSGREAQALASLVKMYKQWAFDLYPGLNFEDFVERTETLGKGRQVQALMMELREKERLKYL 139
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10380.375.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Swi33.230e-28282.74domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Swi34.910e-25879.18domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Swi38.830e-2252.21domain-containing protein n=1 Tax=Tribonema minus ... [more]
Swi34.420e-1345.74domain-containing protein (Fragment) n=1 Tax=Aphan... [more]
Swi31.160e-1245.74domain-containing protein n=5 Tax=Aphanomyces asta... [more]
Swi31.640e-1236.09domain-containing protein n=1 Tax=Peronospora effu... [more]
Swi31.990e-1243.62domain-containing protein n=1 Tax=archaeon TaxID=1... [more]
Swi33.270e-1235.45domain-containing protein n=1 Tax=Hyaloperonospora... [more]
Swi36.280e-1238.95domain-containing protein n=1 Tax=Phytophthora fra... [more]
Timeless-interacting1.120e-1139.25protein isoform x3 n=1 Tax=Plasmopara halstedii Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10380contigEcto-sp9_F_contig10380:1288..3563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score739.2
Seed ortholog evalue1.5e-210
Seed eggNOG ortholog2880.D7FKE8
Preferred nameCSM3
KEGG koko:K10904,ko:K10998
GOsGO:0000003,GO:0000070,GO:0000075,GO:0000076,GO:0000077,GO:0000217,GO:0000228,GO:0000278,GO:0000280,GO:0000403,GO:0000785,GO:0000790,GO:0000819,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007093,GO:0007346,GO:0007530,GO:0007531,GO:0007533,GO:0007534,GO:0008150,GO:0008152,GO:0008156,GO:0008284,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010453,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0016043,GO:0019219,GO:0019222,GO:0022402,GO:0022413,GO:0022414,GO:0030154,GO:0031298,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031494,GO:0031570,GO:0031573,GO:0031974,GO:0031981,GO:0032502,GO:0032505,GO:0032991,GO:0033262,GO:0033554,GO:0034085,GO:0034087,GO:0034641,GO:0034645,GO:0035822,GO:0042127,GO:0043111,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043388,GO:0043570,GO:0043596,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044770,GO:0044773,GO:0044774,GO:0045005,GO:0045132,GO:0045165,GO:0045595,GO:0045786,GO:0045930,GO:0045934,GO:0046483,GO:0048285,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051098,GO:0051099,GO:0051101,GO:0051171,GO:0051172,GO:0051276,GO:0051321,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071514,GO:0071515,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0097159,GO:0098813,GO:0140013,GO:0140014,GO:1901360,GO:1901363,GO:1901576,GO:1903046,GO:1903047,GO:2000104,GO:2000112,GO:2000113,GO:2000241
EggNOG free text desc.replication fork protection
EggNOG OGsKOG3004@1,KOG3004@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionReplication fork protection component Swi3
Ec32 orthologEc-12_002330.1
Exons2
Model size1758
Cds size1758
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928246.2788815-CDS-Ecto-sp9_F_contig10380:1287..27601622928246.2788815-CDS-Ecto-sp9_F_contig10380:1287..2760Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10380 1288..2760 -
1692277807.5390987-CDS-Ecto-sp9_F_contig10380:1287..27601692277807.5390987-CDS-Ecto-sp9_F_contig10380:1287..2760Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10380 1288..2760 -
1622928246.290613-CDS-Ecto-sp9_F_contig10380:3278..35631622928246.290613-CDS-Ecto-sp9_F_contig10380:3278..3563Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10380 3279..3563 -
1692277807.550988-CDS-Ecto-sp9_F_contig10380:3278..35631692277807.550988-CDS-Ecto-sp9_F_contig10380:3278..3563Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10380 3279..3563 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10380.375.1prot_Ecto-sp9_F_contig10380.375.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10380 1288..3563 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10380.375.1

>prot_Ecto-sp9_F_contig10380.375.1 ID=prot_Ecto-sp9_F_contig10380.375.1|Name=mRNA_Ecto-sp9_F_contig10380.375.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=586bp
MSESEEERRPRPIGVADGSDEDSGMERTDAAGANNGTEPGRDSTGVAAPE
EATTAKKVSNRPPAFSENHLVKEKGLWQVYKDFPQKCQYKGRGREAEFLR
GLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRSLLRELRDTERDRV
LEAKYGREAVDDVHAQEAARLAAKESKTAAAEGDRAEEREDEELAGSRYA
MEVDGDVGDEGKSDRQVAAEGSAAAMSDQVRQRIEANRRLALDRLRLKKQ
EAAAAAALVAEKENDGGAVAVPAANDGSGEVENLKEDLMDADGGGGPGDS
FDDDEAVLADMEAEEMAARPVAAEASRGKNTVAEPGPAAVCTSPPSTLAV
ESEETAGALDEEQASPEPTIREDEAMEDAGSSASGANTAAAVVADDANDP
APASAAADGVARGGARAAGAGCAGSVDEASAKCAVAAARGGEPGTTAGEE
SGGELPPASEPGAPAPGVGGGRERDGANDEAASLGTTAAAAAAGADGITG
GAKLDDAVLGGGDGGGGAPEPVAANGDEGGASFSSPAKCRAAAAAASGLP
LSPLGSLFAGTDVSAEGGLAVAREPLGGLFSDENV*
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mRNA from alignment at Ecto-sp9_F_contig10380:1288..3563-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10380.375.1 ID=mRNA_Ecto-sp9_F_contig10380.375.1|Name=mRNA_Ecto-sp9_F_contig10380.375.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2276bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10380:1288..3563- (Ectocarpus species9 EcSCA_722f female)
ATGTCCGAGTCTGAGGAAGAGCGCCGGCCTCGACCCATTGGCGTCGCAGA
CGGAAGCGATGAAGACAGTGGCATGGAGCGAACCGATGCGGCCGGTGCTA
ACAACGGGACCGAGCCTGGGCGGGATTCGACGGGGGTGGCGGCGCCAGAA
GAGGCCACCACCGCAAAGAAGGTCTCAAACAGGCCGCCCGCTTTCTCGGA
GAACCACTTGGTCAAGGAGAAAGGGTTGTGGCAGGTCTACAAGGATTTCC
CTCAAAAGTGTCAGTACAAGGGCAGGGGACGCGAGGTAAAGCAGCTCTAC
AGCAATCTCTGTTTGAGTTTTTGAATTTTTGGACTTGTCCGTTTTTGTAT
TGAGAGACGTTCAGCCTCGACAGGAGGTGGCGTGCTGTGGTCGCTGGTGT
ACTCTTTCGTGGATGCAAGGGTTAGGTTGGATCACAACGCCCCCAGGTTC
TCGACGTTCTCCCTCGTATCAGTCACCCGCCTCGTGCTTTTTCTCTCATT
CTGCAATATGTATGCCCATGAACTGCGGTGGAACATCCCGGGTGTCCGAG
CAACTGGCAATTGTCCCGCGCACACTTGCTGTGTGTAGGCGGGGAAAATA
CTACACACATGTAGCAGTCGGCCACTTACCAGCAGCGGGCAAGTAGATTG
CGCACCACGTTACACTCTCAAACGTTCCACCCTCGTCACCAATGACAGAA
CCCCCCCCCCCCCGCGCATCACTCCCGACGACGCAAGGTCAATGGTCTAA
CTATGCAAAACTGAAGTACGCCCCCCCCATCCGCCCCCTCAATCGGCACC
TAGGCTGAGTTCCTGCGAGGTCTGATGGTCGCCTACAAGGAGTGGGGCTA
CCAGCTGTACCCAGGGGTCGCCTTCGAGGACCTGGCCAGCCGGACGGAGA
AGCTGGGCGGCAGGGCCCGCACCCGCAGCCTCTTGCGCGAGCTCCGGGAC
ACGGAGAGGGACCGCGTGCTGGAGGCCAAGTACGGCCGAGAGGCCGTAGA
CGACGTCCACGCGCAGGAGGCAGCAAGGCTCGCCGCCAAGGAGAGCAAGA
CGGCGGCCGCCGAGGGGGACCGGGCCGAGGAGCGCGAGGACGAGGAACTC
GCGGGTAGTCGCTACGCCATGGAGGTGGACGGAGACGTGGGCGACGAGGG
AAAAAGCGACCGTCAGGTCGCCGCCGAAGGGTCAGCGGCGGCCATGTCGG
ACCAGGTACGGCAACGCATTGAGGCGAACCGCCGGTTGGCGCTCGACCGA
CTGCGCTTGAAGAAACAAGAAGCGGCGGCGGCGGCGGCGTTGGTGGCAGA
AAAGGAGAACGACGGGGGTGCTGTTGCCGTGCCCGCTGCGAACGACGGCA
GCGGAGAAGTCGAGAATCTGAAGGAGGATCTGATGGACGCAGATGGCGGC
GGCGGGCCGGGCGACAGCTTCGATGACGACGAAGCGGTGCTTGCGGACAT
GGAGGCAGAAGAAATGGCGGCCCGGCCGGTTGCTGCTGAGGCCTCACGGG
GGAAGAACACCGTGGCGGAACCCGGGCCTGCTGCCGTTTGCACGTCCCCT
CCTTCGACCTTGGCGGTGGAGAGTGAGGAGACTGCTGGTGCCTTGGACGA
GGAACAGGCGTCGCCGGAGCCAACGATACGAGAAGACGAGGCAATGGAGG
ACGCCGGAAGCTCCGCTTCCGGCGCTAACACTGCTGCTGCCGTTGTTGCC
GATGATGCCAACGACCCGGCTCCTGCTTCTGCCGCCGCTGATGGGGTTGC
AAGAGGGGGGGCACGTGCAGCAGGCGCAGGGTGCGCCGGCAGCGTTGACG
AAGCGTCGGCAAAATGCGCTGTTGCTGCTGCAAGGGGTGGCGAGCCCGGT
ACTACCGCGGGAGAGGAGAGTGGCGGCGAGCTGCCTCCCGCTTCGGAGCC
GGGCGCACCAGCCCCGGGCGTAGGCGGCGGGCGAGAGAGAGACGGTGCGA
ACGATGAAGCTGCCTCATTGGGAACGACGGCGGCGGCGGCGGCGGCAGGG
GCTGATGGAATCACGGGGGGTGCTAAGTTAGATGATGCGGTTTTGGGCGG
TGGTGATGGTGGTGGAGGTGCTCCAGAGCCTGTGGCGGCGAACGGAGACG
AGGGGGGGGCGTCGTTCAGTAGTCCTGCCAAGTGCAGGGCGGCGGCGGCG
GCGGCGAGCGGTTTGCCGCTGTCGCCGCTCGGCAGCCTGTTCGCCGGTAC
TGATGTTTCTGCGGAGGGGGGGCTGGCGGTGGCGAGGGAGCCGCTAGGAG
GACTCTTCTCGGACGAAAACGTCTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10380:1288..3563-

>mRNA_Ecto-sp9_F_contig10380.375.1 ID=mRNA_Ecto-sp9_F_contig10380.375.1|Name=mRNA_Ecto-sp9_F_contig10380.375.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=3516bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10380:1288..3563- (Ectocarpus species9 EcSCA_722f female)
ATGTCCGAGTCTGAGGAAGAGCGCCGGCCTCGACCCATTGGCGTCGCAGA
CGGAAGCGATGAAGACAGTGGCATGGAGCGAACCGATGCGGCCGGTGCTA
ACAACGGGACCGAGCCTGGGCGGGATTCGACGGGGGTGGCGGCGCCAGAA
GAGGCCACCACCGCAAAGAAGGTCTCAAACAGGCCGCCCGCTTTCTCGGA
GAACCACTTGGTCAAGGAGAAAGGGTTGTGGCAGGTCTACAAGGATTTCC
CTCAAAAGTGTCAGTACAAGGGCAGGGGACGCGAGATGTCCGAGTCTGAG
GAAGAGCGCCGGCCTCGACCCATTGGCGTCGCAGACGGAAGCGATGAAGA
CAGTGGCATGGAGCGAACCGATGCGGCCGGTGCTAACAACGGGACCGAGC
CTGGGCGGGATTCGACGGGGGTGGCGGCGCCAGAAGAGGCCACCACCGCA
AAGAAGGTCTCAAACAGGCCGCCCGCTTTCTCGGAGAACCACTTGGTCAA
GGAGAAAGGGTTGTGGCAGGTCTACAAGGATTTCCCTCAAAAGTGTCAGT
ACAAGGGCAGGGGACGCGAGGCTGAGTTCCTGCGAGGTCTGATGGTCGCC
TACAAGGAGTGGGGCTACCAGCTGTACCCAGGGGTCGCCTTCGAGGACCT
GGCCAGCCGGACGGAGAAGCTGGGCGGCAGGGCCCGCACCCGCAGCCTCT
TGCGCGAGCTCCGGGACACGGAGAGGGACCGCGTGCTGGAGGCCAAGTAC
GGCCGAGAGGCCGTAGACGACGTCCACGCGCAGGAGGCAGCAAGGCTCGC
CGCCAAGGAGAGCAAGACGGCGGCCGCCGAGGGGGACCGGGCCGAGGAGC
GCGAGGACGAGGAACTCGCGGGTAGTCGCTACGCCATGGAGGTGGACGGA
GACGTGGGCGACGAGGGAAAAAGCGACCGTCAGGTCGCCGCCGAAGGGTC
AGCGGCGGCCATGTCGGACCAGGTACGGCAACGCATTGAGGCGAACCGCC
GGTTGGCGCTCGACCGACTGCGCTTGAAGAAACAAGAAGCGGCGGCGGCG
GCGGCGTTGGTGGCAGAAAAGGAGAACGACGGGGGTGCTGTTGCCGTGCC
CGCTGCGAACGACGGCAGCGGAGAAGTCGAGAATCTGAAGGAGGATCTGA
TGGACGCAGATGGCGGCGGCGGGCCGGGCGACAGCTTCGATGACGACGAA
GCGGTGCTTGCGGACATGGAGGCAGAAGAAATGGCGGCCCGGCCGGTTGC
TGCTGAGGCCTCACGGGGGAAGAACACCGTGGCGGAACCCGGGCCTGCTG
CCGTTTGCACGTCCCCTCCTTCGACCTTGGCGGTGGAGAGTGAGGAGACT
GCTGGTGCCTTGGACGAGGAACAGGCGTCGCCGGAGCCAACGATACGAGA
AGACGAGGCAATGGAGGACGCCGGAAGCTCCGCTTCCGGCGCTAACACTG
CTGCTGCCGTTGTTGCCGATGATGCCAACGACCCGGCTCCTGCTTCTGCC
GCCGCTGATGGGGTTGCAAGAGGGGGGGCACGTGCAGCAGGCGCAGGGTG
CGCCGGCAGCGTTGACGAAGCGTCGGCAAAATGCGCTGTTGCTGCTGCAA
GGGGTGGCGAGCCCGGTACTACCGCGGGAGAGGAGAGTGGCGGCGAGCTG
CCTCCCGCTTCGGAGCCGGGCGCACCAGCCCCGGGCGTAGGCGGCGGGCG
AGAGAGAGACGGTGCGAACGATGAAGCTGCCTCATTGGGAACGACGGCGG
CGGCGGCGGCGGCAGGGGCTGATGGAATCACGGGGGGTGCTAAGTTAGAT
GATGCGGTTTTGGGCGGTGGTGATGGTGGTGGAGGTGCTCCAGAGCCTGT
GGCGGCGAACGGAGACGAGGGGGGGGCGTCGTTCAGTAGTCCTGCCAAGT
GCAGGGCGGCGGCGGCGGCGGCGAGCGGTTTGCCGCTGTCGCCGCTCGGC
AGCCTGTTCGCCGGTACTGATGTTTCTGCGGAGGGGGGGCTGGCGGTGGC
GAGGGAGCCGCTAGGAGGACTCTTCTCGGACGAAAACGTCTAGGCTGAGT
TCCTGCGAGGTCTGATGGTCGCCTACAAGGAGTGGGGCTACCAGCTGTAC
CCAGGGGTCGCCTTCGAGGACCTGGCCAGCCGGACGGAGAAGCTGGGCGG
CAGGGCCCGCACCCGCAGCCTCTTGCGCGAGCTCCGGGACACGGAGAGGG
ACCGCGTGCTGGAGGCCAAGTACGGCCGAGAGGCCGTAGACGACGTCCAC
GCGCAGGAGGCAGCAAGGCTCGCCGCCAAGGAGAGCAAGACGGCGGCCGC
CGAGGGGGACCGGGCCGAGGAGCGCGAGGACGAGGAACTCGCGGGTAGTC
GCTACGCCATGGAGGTGGACGGAGACGTGGGCGACGAGGGAAAAAGCGAC
CGTCAGGTCGCCGCCGAAGGGTCAGCGGCGGCCATGTCGGACCAGGTACG
GCAACGCATTGAGGCGAACCGCCGGTTGGCGCTCGACCGACTGCGCTTGA
AGAAACAAGAAGCGGCGGCGGCGGCGGCGTTGGTGGCAGAAAAGGAGAAC
GACGGGGGTGCTGTTGCCGTGCCCGCTGCGAACGACGGCAGCGGAGAAGT
CGAGAATCTGAAGGAGGATCTGATGGACGCAGATGGCGGCGGCGGGCCGG
GCGACAGCTTCGATGACGACGAAGCGGTGCTTGCGGACATGGAGGCAGAA
GAAATGGCGGCCCGGCCGGTTGCTGCTGAGGCCTCACGGGGGAAGAACAC
CGTGGCGGAACCCGGGCCTGCTGCCGTTTGCACGTCCCCTCCTTCGACCT
TGGCGGTGGAGAGTGAGGAGACTGCTGGTGCCTTGGACGAGGAACAGGCG
TCGCCGGAGCCAACGATACGAGAAGACGAGGCAATGGAGGACGCCGGAAG
CTCCGCTTCCGGCGCTAACACTGCTGCTGCCGTTGTTGCCGATGATGCCA
ACGACCCGGCTCCTGCTTCTGCCGCCGCTGATGGGGTTGCAAGAGGGGGG
GCACGTGCAGCAGGCGCAGGGTGCGCCGGCAGCGTTGACGAAGCGTCGGC
AAAATGCGCTGTTGCTGCTGCAAGGGGTGGCGAGCCCGGTACTACCGCGG
GAGAGGAGAGTGGCGGCGAGCTGCCTCCCGCTTCGGAGCCGGGCGCACCA
GCCCCGGGCGTAGGCGGCGGGCGAGAGAGAGACGGTGCGAACGATGAAGC
TGCCTCATTGGGAACGACGGCGGCGGCGGCGGCGGCAGGGGCTGATGGAA
TCACGGGGGGTGCTAAGTTAGATGATGCGGTTTTGGGCGGTGGTGATGGT
GGTGGAGGTGCTCCAGAGCCTGTGGCGGCGAACGGAGACGAGGGGGGGGC
GTCGTTCAGTAGTCCTGCCAAGTGCAGGGCGGCGGCGGCGGCGGCGAGCG
GTTTGCCGCTGTCGCCGCTCGGCAGCCTGTTCGCCGGTACTGATGTTTCT
GCGGAGGGGGGGCTGGCGGTGGCGAGGGAGCCGCTAGGAGGACTCTTCTC
GGACGAAAACGTCTAG
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