mRNA_Ecto-sp9_F_contig1023.255.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1023.255.1
Unique NamemRNA_Ecto-sp9_F_contig1023.255.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1023.255.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCL9_9PHAE)

HSP 1 Score: 223 bits (568), Expect = 3.550e-67
Identity = 125/146 (85.62%), Postives = 128/146 (87.67%), Query Frame = 2 
Query:   71 MLSSCARRVVRLRCAEALPRHLGAAGSTTNCRRPTAGVRARGMMAKAGGKKXXXXXXXXXXXXXS----AGEHGLGVTPINFLKDGKDPSVMPDEEYPEWLWNMQLPSLARLKRTKEDDYTLDEFRRFVQLDSREKIKRQNRSGKF 496
            MLSS +RRVV LRCAEAL RH+GAAGSTT CRRPTAGV ARGMMAKAG       XXXXXXXXX     AGEHGLGVTPINFLKDGKDPSVMPDEEYPEWLWNMQLPSLARLKR KE+DYTLDEFRRFVQLDSREKIKRQNRSGKF
Sbjct:    1 MLSSSSRRVVHLRCAEALLRHVGAAGSTTTCRRPTAGVSARGMMAKAGASAASGGXXXXXXXXXXXXXXAGEHGLGVTPINFLKDGKDPSVMPDEEYPEWLWNMQLPSLARLKRKKEEDYTLDEFRRFVQLDSREKIKRQNRSGKF 146
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1023.255.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS05_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 1.080e-45
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 2 
Query:  263 SAGEHGLGVTPINFLKDGKDPSVMPDEEYPEWLWNMQLPSLARLKRTKEDDYTLDEFRRFVQLDSREKIKRQNRSGKF 496
            SAGEHGLGVTPINFLKDGKDPSVMPDEEYPEWLWNMQLPSLARLKRTKEDDYTLDEFRRFVQLDSREKIKRQNRSGKF
Sbjct:   29 SAGEHGLGVTPINFLKDGKDPSVMPDEEYPEWLWNMQLPSLARLKRTKEDDYTLDEFRRFVQLDSREKIKRQNRSGKF 106
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1023.255.1 vs.
Match: Large (subunit ribosomal protein L54, mitochondrial n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SFU4_9CHLO)

HSP 1 Score: 72.8 bits (177), Expect = 5.990e-12
Identity = 39/99 (39.39%), Postives = 52/99 (52.53%), Query Frame = 2 
Query:  191 RGMMAKAGGKKXXXXXXXXXXXXXSAGEHGLGVTPINFLKDGKDPSVMPDEEYPEWLWNMQLP--SLARLKRTKEDDYTLDEFRRFVQLDSREKIKRQN 481
            RG+  K GGKK             SA E    VT  N  KDG DP ++PD++YP WLW +  P  +L  L+R   D    DE +R+V+L  R+ I+R N
Sbjct:   15 RGLAPKKGGKKAEDTSSGTATGHLSATE----VTGCNIFKDGSDPPILPDDQYPSWLWELATPGPTLNELERKGPDSLEPDELKRYVKLKRRDSIRRNN 109
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1023.255.1 vs.
Match: Uncharacterized (protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6MX44_HEVBR)

HSP 1 Score: 70.9 bits (172), Expect = 1.080e-11
Identity = 30/69 (43.48%), Postives = 47/69 (68.12%), Query Frame = 2 
Query:  281 LGVTPINFLKDGKDPSVMPDEEYPEWLWNM--QLPSLARLKRTKEDDYTLDEFRRFVQLDSREKIKRQN 481
            + V   N LKDG DP ++PD EYP+WLW++  + P+L+ L+R K +    ++ +RFV+LD+R +IK  N
Sbjct:    4 IEVVGANILKDGADPKILPDSEYPDWLWHLLDKRPALSALRREKIETLPYEDLKRFVKLDNRARIKENN 72
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1023.255.1 vs.
Match: Large (subunit ribosomal protein L54 n=6 Tax=Salvia TaxID=21880 RepID=A0A4D8Y8A9_SALSN)

HSP 1 Score: 72.4 bits (176), Expect = 1.300e-11
Identity = 30/63 (47.62%), Postives = 45/63 (71.43%), Query Frame = 2 
Query:  299 NFLKDGKDPSVMPDEEYPEWLWNM--QLPSLARLKRTKEDDYTLDEFRRFVQLDSREKIKRQN 481
            N LKDG+DP ++PD EYP+WLW++  + P+L+ L+R   +    DE +RFV+LD+R +IK  N
Sbjct:   64 NILKDGQDPKILPDSEYPDWLWHLLDKRPALSELRRKDTETLPFDELKRFVKLDNRARIKENN 126
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1023.255.1 vs.
Match: uncharacterized (protein LOC103718685 n=1 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B8ZE54_PHODC)

HSP 1 Score: 72.0 bits (175), Expect = 1.780e-11
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 2 
Query:  299 NFLKDGKDPSVMPDEEYPEWLWNM---QLPSLARLKRTKEDDYTLDEFRRFVQLDSREKIKRQN 481
            N LKDG DP +MPD +YP+WLW++   +LP L+ L+R   +  TLD+ RRFV+LD+R +IK  N
Sbjct:   64 NILKDGADPKIMPDSDYPDWLWHLLDKRLP-LSELRREGTETLTLDDLRRFVKLDNRARIKENN 126
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1023.255.1 vs.
Match: 54S (ribosomal protein L37, mitochondrial-like n=2 Tax=Asteroideae TaxID=102804 RepID=UPI001CB9013D)

HSP 1 Score: 71.6 bits (174), Expect = 2.190e-11
Identity = 43/128 (33.59%), Postives = 65/128 (50.78%), Query Frame = 2 
Query:  104 LRCAEALPRHLGAAGSTTNCRRPTAGVRARGMMAKAGGKKXXXXXXXXXXXXXSAGEHGLGVTPINFLKDGKDPSVMPDEEYPEWLWNM--QLPSLARLKRTKEDDYTLDEFRRFVQLDSREKIKRQN 481
            + C ++L R+L A  S  +CR  T    A+    K GG               S       V   N LKDG DP ++PD EYP+WLW++  + P+L+ L+R   +    ++ +RFV+LD+R +IK  N
Sbjct:    3 MNCIKSL-RNLPAKSSLGSCR--TFAAAAKAKKGKGGGASDAPKQSTLSKEVKST-----TVVGANILKDGTDPKILPDSEYPDWLWHLLDKKPALSELRRKNIESLPYEDLKRFVKLDNRSRIKENN 122
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1023.255.1 vs.
Match: 54S (ribosomal protein L37, mitochondrial-like n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8ATG0_NELNU)

HSP 1 Score: 71.6 bits (174), Expect = 2.420e-11
Identity = 31/67 (46.27%), Postives = 45/67 (67.16%), Query Frame = 2 
Query:  287 VTPINFLKDGKDPSVMPDEEYPEWLWNM--QLPSLARLKRTKEDDYTLDEFRRFVQLDSREKIKRQN 481
            V   N LKDG DP ++PD EYP+WLW++  + P+L+ L+R   +    DE +RFV+LD+R +IK  N
Sbjct:   60 VVGANILKDGADPKILPDSEYPDWLWHLLDKKPALSELRRKNIETLPYDELKRFVKLDNRARIKENN 126
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1023.255.1 vs.
Match: Uncharacterized (protein n=4 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484MBP3_9ASTE)

HSP 1 Score: 71.6 bits (174), Expect = 2.480e-11
Identity = 32/67 (47.76%), Postives = 45/67 (67.16%), Query Frame = 2 
Query:  287 VTPINFLKDGKDPSVMPDEEYPEWLWNM--QLPSLARLKRTKEDDYTLDEFRRFVQLDSREKIKRQN 481
            V   N LKDG DP V+PD EYPEWLW++  + P+L+ L+R   +    +E +RFV+LD+R +IK  N
Sbjct:   61 VVGANILKDGTDPKVLPDSEYPEWLWHLLDKKPALSELRRKDLESLPYEELKRFVKLDNRARIKENN 127
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1023.255.1 vs.
Match: Uncharacterized (protein n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1VFZ0_9ROSI)

HSP 1 Score: 72.4 bits (176), Expect = 2.510e-11
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 2 
Query:  287 VTPINFLKDGKDPSVMPDEEYPEWLWNM--QLPSLARLKRTKEDDYTLDEFRRFVQLDSREKIKRQN 481
            V   N LKDG DP V+PD EYP+WLW++  + P+L+ L+R K +    D+ +RFV+LD+R +IK  N
Sbjct:   87 VVGANILKDGADPKVLPDSEYPDWLWHLLDKRPALSELRRKKIEALPYDDLKRFVKLDNRARIKENN 153
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1023.255.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized3.550e-6785.62protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.080e-45100.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Large5.990e-1239.39subunit ribosomal protein L54, mitochondrial n=1 T... [more]
Uncharacterized1.080e-1143.48protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepI... [more]
Large1.300e-1147.62subunit ribosomal protein L54 n=6 Tax=Salvia TaxID... [more]
uncharacterized1.780e-1151.56protein LOC103718685 n=1 Tax=Phoenix dactylifera T... [more]
54S2.190e-1133.59ribosomal protein L37, mitochondrial-like n=2 Tax=... [more]
54S2.420e-1146.27ribosomal protein L37, mitochondrial-like n=1 Tax=... [more]
Uncharacterized2.480e-1147.76protein n=4 Tax=Cuscuta sect. Cleistogrammica TaxI... [more]
Uncharacterized2.510e-1147.76protein n=1 Tax=Morella rubra TaxID=262757 RepID=A... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1023contigEcto-sp9_F_contig1023:11926..15834 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.2
Seed ortholog evalue2.2e-38
Seed eggNOG ortholog2880.D8LS05
Preferred nameMRPL54
KEGG koko:K17435
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.mitochondrial translation
EggNOG OGsKOG3435@1,KOG3435@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko03011
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionRibosomal protein L37, mitochondrial
Ec32 orthologEc-08_001630.1
Exons3
Model size1656
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1023.255.1prot_Ecto-sp9_F_contig1023.255.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1023 13083..15764 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928219.7277763-UTR-Ecto-sp9_F_contig1023:11925..130821622928219.7277763-UTR-Ecto-sp9_F_contig1023:11925..13082Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1023 11926..13082 -
1692277800.2345781-UTR-Ecto-sp9_F_contig1023:11925..130821692277800.2345781-UTR-Ecto-sp9_F_contig1023:11925..13082Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1023 11926..13082 -
1622928219.780611-UTR-Ecto-sp9_F_contig1023:15764..158341622928219.780611-UTR-Ecto-sp9_F_contig1023:15764..15834Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1023 15765..15834 -
1692277800.2849307-UTR-Ecto-sp9_F_contig1023:15764..158341692277800.2849307-UTR-Ecto-sp9_F_contig1023:15764..15834Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1023 15765..15834 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928219.7443511-CDS-Ecto-sp9_F_contig1023:13082..132081622928219.7443511-CDS-Ecto-sp9_F_contig1023:13082..13208Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1023 13083..13208 -
1692277800.2501628-CDS-Ecto-sp9_F_contig1023:13082..132081692277800.2501628-CDS-Ecto-sp9_F_contig1023:13082..13208Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1023 13083..13208 -
1622928219.7584434-CDS-Ecto-sp9_F_contig1023:14367..146031622928219.7584434-CDS-Ecto-sp9_F_contig1023:14367..14603Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1023 14368..14603 -
1692277800.269865-CDS-Ecto-sp9_F_contig1023:14367..146031692277800.269865-CDS-Ecto-sp9_F_contig1023:14367..14603Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1023 14368..14603 -
1622928219.769679-CDS-Ecto-sp9_F_contig1023:15697..157641622928219.769679-CDS-Ecto-sp9_F_contig1023:15697..15764Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1023 15698..15764 -
1692277800.2775922-CDS-Ecto-sp9_F_contig1023:15697..157641692277800.2775922-CDS-Ecto-sp9_F_contig1023:15697..15764Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1023 15698..15764 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1023.255.1

>prot_Ecto-sp9_F_contig1023.255.1 ID=prot_Ecto-sp9_F_contig1023.255.1|Name=mRNA_Ecto-sp9_F_contig1023.255.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=143bp
MLSSCARRVVRLRCAEALPRHLGAAGSTTNCRRPTAGVRARGMMAKAGGK
KGGKGGGGGDSAKDSAGEHGLGVTPINFLKDGKDPSVMPDEEYPEWLWNM
QLPSLARLKRTKEDDYTLDEFRRFVQLDSREKIKRQNRSGKF*
back to top

mRNA from alignment at Ecto-sp9_F_contig1023:11926..15834-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1023.255.1 ID=mRNA_Ecto-sp9_F_contig1023.255.1|Name=mRNA_Ecto-sp9_F_contig1023.255.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3909bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1023:11926..15834- (Ectocarpus species9 EcSCA_722f female)
CATCACAGATCACGGCGAGCAGAGTAAGACAGAGACAGAAGGGCGTCCTG
GCACTCACGGCGGGGTTATCATGTTGAGTTCATGCGCAAGACGAGTGGTG
CGTCTGCGATGCGCGGAAGCTTTGCCGAGGCATCTTGGTAAGCAAAGTTT
TGTGCTGAGCAACATGTGGCTGCTGCTTTCGTAGCTGCGCTGTACATTGC
GTCCCAGCACAGCAGCAGCAGTAGTAGCTGCGGCACGGCCTACAATTGCG
TGATTTGTGCACTCTTGCATGTGAAATGACCTGTGTAGGAGAACGAAGTT
GTTATTTGTTACGCGATTATGTGTGTTAGGCACGACTCTGCTCATCTCTC
ACCATCTGCGATCCGCCTACAGCAGTAGCCTGCATACGCCAGGCAGGGCG
GTACATAGTACAGTAACGCACCGCGGGATCTGCACCTACCCAACTGTGTT
ACAGTCTACCTGTAGCTTGGCACCGTCCTTGCGTCCCACCACGGAGCTTG
TTAGGTAGCAGTTGGTGCCCACCAGGGTTGCACGCCCATCGAAATGTTGC
TTCTAGCTCATGTGTCGTGAGTTGTCCGACATTGAGTCCAACAAGCAATG
CTGCACAGCACCCAGCGGTCTAAACCTCCGGGTCATAGACCACAGGTTGT
GCAGGCCAAGCCGCGTAAATCCATGCACTCTTCTCGGAGGTCCAGTTGTG
CAGCATGCCAAACATGACCTCCACATGACTGCCGAAACAATCATGAAAGT
AGATGCTATCTAGAAGGACGAGCACCTGCTGCGATGCGATGGCATCGACG
CTTGTTGTAGCGGTGCGCTTGTTGGCGACCGCCCAGCCTTTCCTGTGAGG
GTCTGCATGCATGTCTCTCGCCGGAACAGCAGTAGACAGACTGCGAAATC
TTGCAGCGTCTCCCCTGTGCTGCATGAAGCGTGACCCTACGCTCTCAGTA
TAGAATAGAGTAGCTGTCGAAGTTCTTCTCCCCCACGTGTACGATAGAGT
GTGCCCCAAACTCTGAGTTCAAAACATGTTGCGTGTCCAGCTGTTGTCGC
GCGTGCAGCCTTCTTGTATTCAGCAAACGTGTTGGACTCAGCCGTGGCGG
CAAATGAGCCGACTCCCCAAAAGCTGCGTACTTACGCCCCGCAAATACTG
TAACCAAACCCTCCCTCTCCCTCCCTGCGCGAAAAAACCCACCCGCGTCA
ACACATGCGCGAACACCCGGCGCACGAAAAGGAGCGGCGGGCTCTACTAC
CAACTGCCGCAGACCCACCGCCGGCGTTCGCGCGAGAGGGATGATGGCGA
AGGCGGGCGGGAAGAAGGGGGGCAAGGGCGGCGGCGGCGGCGACAGCGCG
AAAGACAGCGCGGGGGAGCACGGGCTAGGCGTGACGCCCATCAACTTCCT
GAAGGATGGGAAGGACCCTTCGGTCATGCCCGACGAGGAATACCCGGAAT
GGCTGTGGAATATGCAGGTACTACTGTATGTACCATTATATTATGCCTGG
TACATGTACCATTATATTAAACGTGGCATCTCCGCGACCCGAATGATAAA
GCGAAACCGACAGCAGCCCGGTCGAATAATAAAAAACAGGCCTATATAAC
AATCTGAACTACGCTTTTACAGAAAATCACTGTGAAGAATACCTACCCGT
TCAAGAGAATTAACCCAGTCCAAAGGGTATGTGTTGTATGTGTTGATTCT
TCTTGCTAAGGTTTTTGCTGGCGGAGGGGGGTTGTCGTGTAGCGTTTGAG
GGGCGGGCGGGCACCATGCTCAGCCCCGTCTTGCCTTAGGGGGGTCGATT
TCCCACAGGAAGAGTCTTGCTCGATGTACAAGTACAGGGTCTGACACGGT
GTCGTTCTTTGGTAGGTGATGTTTTCGTTGCTGATTCAGGAGGCTTCTTT
GGGATAAACGACGGTTGCGAGATTCGGTGTATAGTTGCCAGGAGCGTGCC
GTTACCGGCGTTGGGGGTATCGGATACAACGGTCGCTTGAAGCTGACGAA
ATCTCGATATTGACAAAAGTCCGAAAGCCGTCAATAGCGCAACTTCAGGA
GTTTCTCGTCTTCGGCAAAGGCTGCGGTGGAAAGGCGCTGGGAGTGCTTT
TTGTATTTTTGCCCCTTCCGATGACTTTCAACCTTGCCCCGTCCGCGTAT
TGAGGCCCAGGAATAAAAATAAATGAATCAATATGCACAGCGTATGTTAT
TTATGGCCTGAACCGAAGTGTCATTTTCGAGAACCCTCGCAATGAACTCG
ATGGGTGATTTTGGTGGCGGCTGCATCCCCGCACCACGACCGACAGCCGA
AGCAGCCCTACCTTTCAACAGACACAACCAGTTTTCGCTAGAAACGAGCG
AGTGGATTTGCAGCGGTCGCCGTGGCGTCTACAGTACTCTTCCGGCCAAC
CCGCCCCATCTAAAGGGACGTGTGCGCTCCAGGGAACAAGAGTATTCGAC
GCAACAACTTGTGCGTGTCCACCCTCTGCTCATGTACACACACTTGGCGC
GTTTTTCAAAACTGTGTTGAGTTTGTTACATGACGCCGTCGAGCACTAGC
TACGTGTAGCTGCTGACCAGGATATCCCCCTCCTCCCCACTTTCCTCGTC
CGCTGCCCCCCCCGTCGCCCCCGTAGCTGCCAAGTCTTGCGAGGTTAAAG
CGTACGAAGGAGGACGACTACACGCTCGACGAGTTCAGGCGATTCGTTCA
GCTCGACAGCCGAGAAAAGATCAAGCGCCAGAACCGTTCGGGAAAATTCT
AAAAAGCTTAATTGGGTAGTACGGGAGGAGAAGCGGGAAAGAACGGCAGC
TGCTGTGATTGGCTAGGGATTGATCGGTTGACCCGCTTTTTGGGCTGGTT
TGTCGCTCCTTGGCAGCACGGTTGGTGATACAGCAACAGGATTCCCGTAG
GTGACATGACGCAAGACATTACACCCCCTGGATCGACTTTCAAAACTCGA
TTTCTCCCCTGCAGAAAAGAGTCGCAGCGTCGAAGATGGCGGTGTTGGAG
CCGCAGAGCGTTCCCAAAAACTTCGTTGTGTCATTCATGGATCGTCTTCA
TCGCAGAGTCATCGAGCTGTGAAAATCGGTCTAGGGGTGTGTGGTATGCT
ATGCCATGCCACCTACGTCTACTCCGCAATTTCGGGAAGGGGATCACGAT
TGGCGCAGAGTATTGATGTTGGAGGGATCGCCGGTACTTACCTTTGTTGA
GCGGAGAAGACGCGGTCGGTTGTACCACCGTGGCGGGGTCCCCACGGACA
GTATCGCGATTTTTCATTGGCATACATAATGTACGGCCCAGATGAGAAAC
GAAGACAGATACCGCCCCGAGATTTTTCGATACCGGTGGGGAGTACCACA
GCGTTCTCGGCATGAACTGAGCCCCGACATGCTGGCCTACACTGCTGCGT
ATAAGGGCGCCCTTTTATGAGAATGGTCAGTGCCGCGTGTTTTGCGGGTG
ACGACGGGCGAAAGCACTCCGGGTTTTCGAACGGGGGTGGGGAGGTGGTC
TACAGATCGAAGGACACAGGTGTGGTGTTGAGATTGCGTGCGTGCTTGGT
TCCAGTGCCCAGGCTAGACACGAAAACTACAACAGAAAATCAGGATTTCG
CAGCCAGTAGCAATAGACGAACGTCAATATTCGTTTGAGGCGTGGTGCGT
GGCCGGCGTCTAGCTGAATGTGTTGCTTCGGTTTTGCTGCGGAGAACGGG
GATCTTGCTCATATTCGAATTGGCATTATCAAAGCAGTTGGTGTATTTTT
GGACTTGCTCGTATTCGATTTAGCAATATCAAGCCATTGATGTATTTTGG
ACTCTTGTCTCTTCCTCCCCTCATTTTTTGGCGAGGGCGATTCCAACCTC
TCGGTGGATTCGACTCGTATTTTTCCTAAGAAAGAGCTTCGATCGAACAA
AACGGTGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1023:11926..15834-

>mRNA_Ecto-sp9_F_contig1023.255.1 ID=mRNA_Ecto-sp9_F_contig1023.255.1|Name=mRNA_Ecto-sp9_F_contig1023.255.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=858bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1023:11926..15834- (Ectocarpus species9 EcSCA_722f female)
ATGTTGAGTTCATGCGCAAGACGAGTGGTGCGTCTGCGATGCGCGGAAGC
TTTGCCGAGGCATCTTGATGTTGAGTTCATGCGCAAGACGAGTGGTGCGT
CTGCGATGCGCGGAAGCTTTGCCGAGGCATCTTGGAGCGGCGGGCTCTAC
TACCAACTGCCGCAGACCCACCGCCGGCGTTCGCGCGAGAGGGATGATGG
CGAAGGCGGGCGGGAAGAAGGGGGGCAAGGGCGGCGGCGGCGGCGACAGC
GCGAAAGACAGCGCGGGGGAGCACGGGCTAGGCGTGACGCCCATCAACTT
CCTGAAGGATGGGAAGGACCCTTCGGTCATGCCCGACGAGGAATACCCGG
AATGGCTGTGGAATATGCAGGAGCGGCGGGCTCTACTACCAACTGCCGCA
GACCCACCGCCGGCGTTCGCGCGAGAGGGATGATGGCGAAGGCGGGCGGG
AAGAAGGGGGGCAAGGGCGGCGGCGGCGGCGACAGCGCGAAAGACAGCGC
GGGGGAGCACGGGCTAGGCGTGACGCCCATCAACTTCCTGAAGGATGGGA
AGGACCCTTCGGTCATGCCCGACGAGGAATACCCGGAATGGCTGTGGAAT
ATGCAGCTGCCAAGTCTTGCGAGGTTAAAGCGTACGAAGGAGGACGACTA
CACGCTCGACGAGTTCAGGCGATTCGTTCAGCTCGACAGCCGAGAAAAGA
TCAAGCGCCAGAACCGTTCGGGAAAATTCTAACTGCCAAGTCTTGCGAGG
TTAAAGCGTACGAAGGAGGACGACTACACGCTCGACGAGTTCAGGCGATT
CGTTCAGCTCGACAGCCGAGAAAAGATCAAGCGCCAGAACCGTTCGGGAA
AATTCTAA
back to top