prot_Ecto-sp9_F_contig9683.17788.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig9683.17788.1
Unique Nameprot_Ecto-sp9_F_contig9683.17788.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length84
Homology
BLAST of mRNA_Ecto-sp9_F_contig9683.17788.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C6_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 2.430e-49
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 0
Query:    1 VSSVLLRQNPHNVNEWQKRVKLFAEDPRKAIICYTEAVKTVDPKKATGMLHKLWMDFAKFYEGHGDVANARVILEKATLVAYR 83
            VSSVLLRQNPHNVNEWQKRVKLFAEDPRKAIICYTEAVKTVDPKKATG LHKLWMDFAKFYEGHGDVANARVILEKATLVAYR
Sbjct:  288 VSSVLLRQNPHNVNEWQKRVKLFAEDPRKAIICYTEAVKTVDPKKATGKLHKLWMDFAKFYEGHGDVANARVILEKATLVAYR 370          
BLAST of mRNA_Ecto-sp9_F_contig9683.17788.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V029_9STRA)

HSP 1 Score: 129 bits (323), Expect = 6.320e-37
Identity = 59/83 (71.08%), Postives = 67/83 (80.72%), Query Frame = 0
Query:    1 VSSVLLRQNPHNVNEWQKRVKLFAEDPRKAIICYTEAVKTVDPKKATGMLHKLWMDFAKFYEGHGDVANARVILEKATLVAYR 83
            +SSVLLRQNPHNV+EW KRVKLF + P K I+CYTEAVKTVDPK A G LH LW+ FA+FYE H D+ NARVIL KAT V Y+
Sbjct:    6 LSSVLLRQNPHNVHEWHKRVKLFKDQPNKVIVCYTEAVKTVDPKLALGKLHTLWLSFARFYEDHEDLDNARVILRKATQVGYK 88          
BLAST of mRNA_Ecto-sp9_F_contig9683.17788.1 vs.
Match: Tetratricopeptide (repeat like superfamily protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IRZ2_KLENI)

HSP 1 Score: 128 bits (322), Expect = 1.050e-32
Identity = 61/83 (73.49%), Postives = 68/83 (81.93%), Query Frame = 0
Query:    1 VSSVLLRQNPHNVNEWQKRVKLFAEDPRKAIICYTEAVKTVDPKKATGMLHKLWMDFAKFYEGHGDVANARVILEKATLVAYR 83
            VSSVLLRQNPHNV+EW KRVKLFA DP + I+ YTEAVKTVDP KA G  H LW+DFAK YE HGD+ NARVIL+KAT V Y+
Sbjct:  340 VSSVLLRQNPHNVHEWHKRVKLFAGDPTRQILTYTEAVKTVDPLKALGKPHTLWVDFAKLYEKHGDLPNARVILDKATQVGYK 422          
BLAST of mRNA_Ecto-sp9_F_contig9683.17788.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RCZ1_9CHLO)

HSP 1 Score: 125 bits (313), Expect = 1.650e-31
Identity = 58/83 (69.88%), Postives = 68/83 (81.93%), Query Frame = 0
Query:    1 VSSVLLRQNPHNVNEWQKRVKLFAEDPRKAIICYTEAVKTVDPKKATGMLHKLWMDFAKFYEGHGDVANARVILEKATLVAYR 83
            VSSV+LRQNPHNV+EW KRVKLF   P + I+ +TEAVKTVD +KA G  H LW+ FAKFYEGHGD+ANARV+LEKA LV Y+
Sbjct:  354 VSSVMLRQNPHNVHEWHKRVKLFEGKPTRQIVTFTEAVKTVDIQKAVGKPHSLWIAFAKFYEGHGDLANARVVLEKAVLVPYK 436          
BLAST of mRNA_Ecto-sp9_F_contig9683.17788.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KF12_CHABU)

HSP 1 Score: 123 bits (309), Expect = 5.990e-31
Identity = 58/83 (69.88%), Postives = 67/83 (80.72%), Query Frame = 0
Query:    1 VSSVLLRQNPHNVNEWQKRVKLFAEDPRKAIICYTEAVKTVDPKKATGMLHKLWMDFAKFYEGHGDVANARVILEKATLVAYR 83
            VSSVLLRQNPHNV+EW KRVKLFA +  K ++ YTEAV+TVDP KA G  H LW+ FAKFYEGH D+ NARVILEKAT V ++
Sbjct:  454 VSSVLLRQNPHNVHEWHKRVKLFAGNAHKQVLTYTEAVRTVDPLKAVGKPHTLWVSFAKFYEGHKDLVNARVILEKATQVPFK 536          
BLAST of mRNA_Ecto-sp9_F_contig9683.17788.1 vs.
Match: Pre-mRNA-splicing (factor SYF1 n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SH90_AUXPR)

HSP 1 Score: 122 bits (306), Expect = 1.520e-30
Identity = 56/83 (67.47%), Postives = 65/83 (78.31%), Query Frame = 0
Query:    1 VSSVLLRQNPHNVNEWQKRVKLFAEDPRKAIICYTEAVKTVDPKKATGMLHKLWMDFAKFYEGHGDVANARVILEKATLVAYR 83
            +SSV+LRQNPHNV+EW KR KLFA DP K I+CYTEAV+TVDP KA G +H LW+ FAK YE HGD+ANAR I  KA  V Y+
Sbjct:  365 LSSVVLRQNPHNVHEWHKRAKLFAADPTKQILCYTEAVRTVDPDKAVGKVHSLWVAFAKLYEQHGDLANARFIYGKAAEVPYK 447          
BLAST of mRNA_Ecto-sp9_F_contig9683.17788.1 vs.
Match: Glycine--tRNA (ligase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W251_9STRA)

HSP 1 Score: 122 bits (305), Expect = 2.070e-30
Identity = 60/85 (70.59%), Postives = 68/85 (80.00%), Query Frame = 0
Query:    1 VSSVLLRQNPHNVNEWQKRVKLF--AEDPRKAIICYTEAVKTVDPKKATGMLHKLWMDFAKFYEGHGDVANARVILEKATLVAYR 83
            +SSVLLRQNPHNV EW KRVKL+  AED R  I+CYTEAVKTV P +ATG  H LW+ FAKFYE HGDVA+AR IL+KA  VAY+
Sbjct:  345 LSSVLLRQNPHNVPEWHKRVKLYEDAEDLRNVIVCYTEAVKTVVPSQATGKPHTLWLAFAKFYEDHGDVASARTILQKAVEVAYK 429          
BLAST of mRNA_Ecto-sp9_F_contig9683.17788.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VQU6_9CHLO)

HSP 1 Score: 114 bits (285), Expect = 2.300e-30
Identity = 51/83 (61.45%), Postives = 64/83 (77.11%), Query Frame = 0
Query:    1 VSSVLLRQNPHNVNEWQKRVKLFAEDPRKAIICYTEAVKTVDPKKATGMLHKLWMDFAKFYEGHGDVANARVILEKATLVAYR 83
            ++SV+LRQNPHNV+EW KRVK+F  +P + I+ YTEAVKTVD  KA G  H LW  FAKFYE HGDV NAR++ EKAT  +++
Sbjct:   43 LNSVMLRQNPHNVSEWHKRVKIFEGNPTRQILTYTEAVKTVDAAKALGKPHSLWCAFAKFYERHGDVPNARIVFEKATQASFK 125          
BLAST of mRNA_Ecto-sp9_F_contig9683.17788.1 vs.
Match: Pre-mRNA-splicing (factor SYF1 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YQA2_NANGC)

HSP 1 Score: 121 bits (303), Expect = 3.860e-30
Identity = 57/85 (67.06%), Postives = 67/85 (78.82%), Query Frame = 0
Query:    1 VSSVLLRQNPHNVNEWQKRVKLFA--EDPRKAIICYTEAVKTVDPKKATGMLHKLWMDFAKFYEGHGDVANARVILEKATLVAYR 83
            +SSVLLRQNPHNV+EW KR KLF    DP K I+C+TEAVKTVDPKKA G L+ LW  FAK+YE H D+ NARV+L KATLV ++
Sbjct:  362 LSSVLLRQNPHNVHEWHKRAKLFQAQNDPHKVIVCFTEAVKTVDPKKAFGKLYSLWTAFAKYYEEHDDIDNARVVLNKATLVNFK 446          
BLAST of mRNA_Ecto-sp9_F_contig9683.17788.1 vs.
Match: Protein (prenylyltransferase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QCU9_9CHLO)

HSP 1 Score: 120 bits (301), Expect = 7.180e-30
Identity = 56/83 (67.47%), Postives = 65/83 (78.31%), Query Frame = 0
Query:    1 VSSVLLRQNPHNVNEWQKRVKLFAEDPRKAIICYTEAVKTVDPKKATGMLHKLWMDFAKFYEGHGDVANARVILEKATLVAYR 83
            +S+V+LRQNPHNV EW KRVKLFA DP K I+ YTEAVKTVD  KA G  + LW+ FAKFYEGHGD+ANAR+I  KA  V Y+
Sbjct:  380 LSAVMLRQNPHNVAEWHKRVKLFAGDPTKQILTYTEAVKTVDHDKAVGKPNSLWVAFAKFYEGHGDIANARIIFNKAVQVPYK 462          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9683.17788.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.430e-4998.80protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical6.320e-3771.08protein (Fragment) n=1 Tax=Fibrocapsa japonica Tax... [more]
Tetratricopeptide1.050e-3273.49repeat like superfamily protein n=1 Tax=Klebsormid... [more]
Hypothetical1.650e-3169.88protein (Fragment) n=1 Tax=Pyramimonas obovata Tax... [more]
Uncharacterized5.990e-3169.88protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0... [more]
Pre-mRNA-splicing1.520e-3067.47factor SYF1 n=2 Tax=Auxenochlorella protothecoides... [more]
Glycine--tRNA2.070e-3070.59ligase n=1 Tax=Rhizochromulina marina TaxID=103483... [more]
Hypothetical2.300e-3061.45protein (Fragment) n=1 Tax=Chlamydomonas euryale T... [more]
Pre-mRNA-splicing3.860e-3067.06factor SYF1 n=3 Tax=Monodopsidaceae TaxID=425072 R... [more]
Protein7.180e-3067.47prenylyltransferase n=1 Tax=Scenedesmus sp. NREL 4... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 5..82
e-value: 3.6E-7
score: 32.2
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 6..77
NoneNo IPR availablePANTHERPTHR11246PRE-MRNA SPLICING FACTORcoord: 1..82
NoneNo IPR availablePANTHERPTHR11246:SF5PRE-MRNA-SPLICING FACTOR SYF1coord: 1..82

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9683contigEcto-sp9_F_contig9683:3645..4444 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9683.17788.1mRNA_Ecto-sp9_F_contig9683.17788.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig9683 3645..4444 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig9683.17788.1 ID=prot_Ecto-sp9_F_contig9683.17788.1|Name=mRNA_Ecto-sp9_F_contig9683.17788.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=84bp
VSSVLLRQNPHNVNEWQKRVKLFAEDPRKAIICYTEAVKTVDPKKATGML
HKLWMDFAKFYEGHGDVANARVILEKATLVAYR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf