mRNA_Ecto-sp9_F_contig9683.17788.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9683.17788.1
Unique NamemRNA_Ecto-sp9_F_contig9683.17788.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig9683.17788.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C6_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 2.430e-49
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 1
Query:    1 VSSVLLRQNPHNVNEWQKRVKLFAEDPRKAIICYTEAVKTVDPKKATGMLHKLWMDFAKFYEGHGDVANARVILEKATLVAYR 249
            VSSVLLRQNPHNVNEWQKRVKLFAEDPRKAIICYTEAVKTVDPKKATG LHKLWMDFAKFYEGHGDVANARVILEKATLVAYR
Sbjct:  288 VSSVLLRQNPHNVNEWQKRVKLFAEDPRKAIICYTEAVKTVDPKKATGKLHKLWMDFAKFYEGHGDVANARVILEKATLVAYR 370          
BLAST of mRNA_Ecto-sp9_F_contig9683.17788.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V029_9STRA)

HSP 1 Score: 129 bits (323), Expect = 6.320e-37
Identity = 59/83 (71.08%), Postives = 67/83 (80.72%), Query Frame = 1
Query:    1 VSSVLLRQNPHNVNEWQKRVKLFAEDPRKAIICYTEAVKTVDPKKATGMLHKLWMDFAKFYEGHGDVANARVILEKATLVAYR 249
            +SSVLLRQNPHNV+EW KRVKLF + P K I+CYTEAVKTVDPK A G LH LW+ FA+FYE H D+ NARVIL KAT V Y+
Sbjct:    6 LSSVLLRQNPHNVHEWHKRVKLFKDQPNKVIVCYTEAVKTVDPKLALGKLHTLWLSFARFYEDHEDLDNARVILRKATQVGYK 88          
BLAST of mRNA_Ecto-sp9_F_contig9683.17788.1 vs.
Match: Tetratricopeptide (repeat like superfamily protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IRZ2_KLENI)

HSP 1 Score: 128 bits (322), Expect = 1.050e-32
Identity = 61/83 (73.49%), Postives = 68/83 (81.93%), Query Frame = 1
Query:    1 VSSVLLRQNPHNVNEWQKRVKLFAEDPRKAIICYTEAVKTVDPKKATGMLHKLWMDFAKFYEGHGDVANARVILEKATLVAYR 249
            VSSVLLRQNPHNV+EW KRVKLFA DP + I+ YTEAVKTVDP KA G  H LW+DFAK YE HGD+ NARVIL+KAT V Y+
Sbjct:  340 VSSVLLRQNPHNVHEWHKRVKLFAGDPTRQILTYTEAVKTVDPLKALGKPHTLWVDFAKLYEKHGDLPNARVILDKATQVGYK 422          
BLAST of mRNA_Ecto-sp9_F_contig9683.17788.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RCZ1_9CHLO)

HSP 1 Score: 125 bits (313), Expect = 1.650e-31
Identity = 58/83 (69.88%), Postives = 68/83 (81.93%), Query Frame = 1
Query:    1 VSSVLLRQNPHNVNEWQKRVKLFAEDPRKAIICYTEAVKTVDPKKATGMLHKLWMDFAKFYEGHGDVANARVILEKATLVAYR 249
            VSSV+LRQNPHNV+EW KRVKLF   P + I+ +TEAVKTVD +KA G  H LW+ FAKFYEGHGD+ANARV+LEKA LV Y+
Sbjct:  354 VSSVMLRQNPHNVHEWHKRVKLFEGKPTRQIVTFTEAVKTVDIQKAVGKPHSLWIAFAKFYEGHGDLANARVVLEKAVLVPYK 436          
BLAST of mRNA_Ecto-sp9_F_contig9683.17788.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KF12_CHABU)

HSP 1 Score: 123 bits (309), Expect = 5.990e-31
Identity = 58/83 (69.88%), Postives = 67/83 (80.72%), Query Frame = 1
Query:    1 VSSVLLRQNPHNVNEWQKRVKLFAEDPRKAIICYTEAVKTVDPKKATGMLHKLWMDFAKFYEGHGDVANARVILEKATLVAYR 249
            VSSVLLRQNPHNV+EW KRVKLFA +  K ++ YTEAV+TVDP KA G  H LW+ FAKFYEGH D+ NARVILEKAT V ++
Sbjct:  454 VSSVLLRQNPHNVHEWHKRVKLFAGNAHKQVLTYTEAVRTVDPLKAVGKPHTLWVSFAKFYEGHKDLVNARVILEKATQVPFK 536          
BLAST of mRNA_Ecto-sp9_F_contig9683.17788.1 vs.
Match: Pre-mRNA-splicing (factor SYF1 n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SH90_AUXPR)

HSP 1 Score: 122 bits (306), Expect = 1.520e-30
Identity = 56/83 (67.47%), Postives = 65/83 (78.31%), Query Frame = 1
Query:    1 VSSVLLRQNPHNVNEWQKRVKLFAEDPRKAIICYTEAVKTVDPKKATGMLHKLWMDFAKFYEGHGDVANARVILEKATLVAYR 249
            +SSV+LRQNPHNV+EW KR KLFA DP K I+CYTEAV+TVDP KA G +H LW+ FAK YE HGD+ANAR I  KA  V Y+
Sbjct:  365 LSSVVLRQNPHNVHEWHKRAKLFAADPTKQILCYTEAVRTVDPDKAVGKVHSLWVAFAKLYEQHGDLANARFIYGKAAEVPYK 447          
BLAST of mRNA_Ecto-sp9_F_contig9683.17788.1 vs.
Match: Glycine--tRNA (ligase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W251_9STRA)

HSP 1 Score: 122 bits (305), Expect = 2.070e-30
Identity = 60/85 (70.59%), Postives = 68/85 (80.00%), Query Frame = 1
Query:    1 VSSVLLRQNPHNVNEWQKRVKLF--AEDPRKAIICYTEAVKTVDPKKATGMLHKLWMDFAKFYEGHGDVANARVILEKATLVAYR 249
            +SSVLLRQNPHNV EW KRVKL+  AED R  I+CYTEAVKTV P +ATG  H LW+ FAKFYE HGDVA+AR IL+KA  VAY+
Sbjct:  345 LSSVLLRQNPHNVPEWHKRVKLYEDAEDLRNVIVCYTEAVKTVVPSQATGKPHTLWLAFAKFYEDHGDVASARTILQKAVEVAYK 429          
BLAST of mRNA_Ecto-sp9_F_contig9683.17788.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VQU6_9CHLO)

HSP 1 Score: 114 bits (285), Expect = 2.300e-30
Identity = 51/83 (61.45%), Postives = 64/83 (77.11%), Query Frame = 1
Query:    1 VSSVLLRQNPHNVNEWQKRVKLFAEDPRKAIICYTEAVKTVDPKKATGMLHKLWMDFAKFYEGHGDVANARVILEKATLVAYR 249
            ++SV+LRQNPHNV+EW KRVK+F  +P + I+ YTEAVKTVD  KA G  H LW  FAKFYE HGDV NAR++ EKAT  +++
Sbjct:   43 LNSVMLRQNPHNVSEWHKRVKIFEGNPTRQILTYTEAVKTVDAAKALGKPHSLWCAFAKFYERHGDVPNARIVFEKATQASFK 125          
BLAST of mRNA_Ecto-sp9_F_contig9683.17788.1 vs.
Match: Pre-mRNA-splicing (factor SYF1 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YQA2_NANGC)

HSP 1 Score: 121 bits (303), Expect = 3.860e-30
Identity = 57/85 (67.06%), Postives = 67/85 (78.82%), Query Frame = 1
Query:    1 VSSVLLRQNPHNVNEWQKRVKLFA--EDPRKAIICYTEAVKTVDPKKATGMLHKLWMDFAKFYEGHGDVANARVILEKATLVAYR 249
            +SSVLLRQNPHNV+EW KR KLF    DP K I+C+TEAVKTVDPKKA G L+ LW  FAK+YE H D+ NARV+L KATLV ++
Sbjct:  362 LSSVLLRQNPHNVHEWHKRAKLFQAQNDPHKVIVCFTEAVKTVDPKKAFGKLYSLWTAFAKYYEEHDDIDNARVVLNKATLVNFK 446          
BLAST of mRNA_Ecto-sp9_F_contig9683.17788.1 vs.
Match: Protein (prenylyltransferase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QCU9_9CHLO)

HSP 1 Score: 120 bits (301), Expect = 7.180e-30
Identity = 56/83 (67.47%), Postives = 65/83 (78.31%), Query Frame = 1
Query:    1 VSSVLLRQNPHNVNEWQKRVKLFAEDPRKAIICYTEAVKTVDPKKATGMLHKLWMDFAKFYEGHGDVANARVILEKATLVAYR 249
            +S+V+LRQNPHNV EW KRVKLFA DP K I+ YTEAVKTVD  KA G  + LW+ FAKFYEGHGD+ANAR+I  KA  V Y+
Sbjct:  380 LSAVMLRQNPHNVAEWHKRVKLFAGDPTKQILTYTEAVKTVDHDKAVGKPNSLWVAFAKFYEGHGDIANARIIFNKAVQVPYK 462          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9683.17788.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.430e-4998.80protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical6.320e-3771.08protein (Fragment) n=1 Tax=Fibrocapsa japonica Tax... [more]
Tetratricopeptide1.050e-3273.49repeat like superfamily protein n=1 Tax=Klebsormid... [more]
Hypothetical1.650e-3169.88protein (Fragment) n=1 Tax=Pyramimonas obovata Tax... [more]
Uncharacterized5.990e-3169.88protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0... [more]
Pre-mRNA-splicing1.520e-3067.47factor SYF1 n=2 Tax=Auxenochlorella protothecoides... [more]
Glycine--tRNA2.070e-3070.59ligase n=1 Tax=Rhizochromulina marina TaxID=103483... [more]
Hypothetical2.300e-3061.45protein (Fragment) n=1 Tax=Chlamydomonas euryale T... [more]
Pre-mRNA-splicing3.860e-3067.06factor SYF1 n=3 Tax=Monodopsidaceae TaxID=425072 R... [more]
Protein7.180e-3067.47prenylyltransferase n=1 Tax=Scenedesmus sp. NREL 4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9683contigEcto-sp9_F_contig9683:3645..4444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.4
Seed ortholog evalue1.8e-40
Seed eggNOG ortholog2880.D7G3C6
KEGG koko:K12867
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
GOsGO:0000349,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0000974,GO:0001701,GO:0001824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048856,GO:0050896,GO:0051716,GO:0065003,GO:0071007,GO:0071010,GO:0071012,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990904
EggNOG free text desc.generation of catalytic spliceosome for first transesterification step
EggNOG OGsKOG2047@1,KOG2047@2759
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-21_002830.1
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size252
Cds size252
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931057.1791048-CDS-Ecto-sp9_F_contig9683:3644..37521622931057.1791048-CDS-Ecto-sp9_F_contig9683:3644..3752Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9683 3645..3752 +
1692279012.630072-CDS-Ecto-sp9_F_contig9683:3644..37521692279012.630072-CDS-Ecto-sp9_F_contig9683:3644..3752Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9683 3645..3752 +
1622931057.1991472-CDS-Ecto-sp9_F_contig9683:4300..44441622931057.1991472-CDS-Ecto-sp9_F_contig9683:4300..4444Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9683 4301..4444 +
1692279012.6433218-CDS-Ecto-sp9_F_contig9683:4300..44441692279012.6433218-CDS-Ecto-sp9_F_contig9683:4300..4444Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9683 4301..4444 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9683.17788.1prot_Ecto-sp9_F_contig9683.17788.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9683 3645..4444 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9683.17788.1

>prot_Ecto-sp9_F_contig9683.17788.1 ID=prot_Ecto-sp9_F_contig9683.17788.1|Name=mRNA_Ecto-sp9_F_contig9683.17788.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=84bp
VSSVLLRQNPHNVNEWQKRVKLFAEDPRKAIICYTEAVKTVDPKKATGML
HKLWMDFAKFYEGHGDVANARVILEKATLVAYR*
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mRNA from alignment at Ecto-sp9_F_contig9683:3645..4444+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9683.17788.1 ID=mRNA_Ecto-sp9_F_contig9683.17788.1|Name=mRNA_Ecto-sp9_F_contig9683.17788.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=800bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9683:3645..4444+ (Ectocarpus species9 EcSCA_722f female)
GTGAGTTCCGTGCTCCTCCGACAAAACCCTCACAACGTCAACGAGTGGCA GAAGCGCGTCAAGCTGTTCGCGGAAGACCCCCGTAAGGCCATCATCTGCT ACACCGAGGTGCTTTTTTTTTTTTTTCCCAGAAAATATACGTTCAATCAC AAAAAATAAACTGACCGTTTGAGACGTAGCTGCGGCATGTGTTGAAGTCT TAGTCTTGACGGTAGTGGGGTGGGAGAAAAGCCGCCTGGATGCTGGGCTT GTTTTGAGTGTTTGTTTGTTTTTAACCACTTTTTTTTTTCTCTCTCTTGT CTTTTCCGGTATGATGGCAGCCACCACCCTTCGTGCATCTACTATTTTCG CAGCAGCAAATCGCCGACCCCACAAGCATGCGCTGGTCTTTGGGTCTCAA CGAAGACCGTGTATACGGCCGTGCAAGACAGCGTCCCCGGGCTGAGAGTG TGGATTAGGCTAGGGAAAAACATGTTAGAGCCACCACCTTTTTGCAAAAG TAGGAGGGAACGATTGGCCGTCATCGGTGATCGGTCCTGTGGGAACAATG CCCCGTCCTCTCGGGGGGCGCGTGGTCAGTGGTCTAACCTCTAAGGCATG CAAAACATTCGTACCTCCGCCCCAAACCTTGGCCATGCGGCCACGTATCA TCTCAGGCGGTGAAAACCGTGGACCCCAAGAAGGCGACGGGCATGCTCCA CAAGCTGTGGATGGACTTCGCCAAGTTCTACGAGGGGCACGGGGACGTGG CGAACGCCAGGGTTATCTTGGAGAAGGCCACCCTCGTCGCTTACAGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9683:3645..4444+

>mRNA_Ecto-sp9_F_contig9683.17788.1 ID=mRNA_Ecto-sp9_F_contig9683.17788.1|Name=mRNA_Ecto-sp9_F_contig9683.17788.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=504bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9683:3645..4444+ (Ectocarpus species9 EcSCA_722f female)
GTGAGTTCCGTGCTCCTCCGACAAAACCCTCACAACGTCAACGAGTGGCA
GAAGCGCGTCAAGCTGTTCGCGGAAGACCCCCGTAAGGCCATCATCTGCT
ACACCGAGGTGAGTTCCGTGCTCCTCCGACAAAACCCTCACAACGTCAAC
GAGTGGCAGAAGCGCGTCAAGCTGTTCGCGGAAGACCCCCGTAAGGCCAT
CATCTGCTACACCGAGGCGGTGAAAACCGTGGACCCCAAGAAGGCGACGG
GCATGCTCCACAAGCTGTGGATGGACTTCGCCAAGTTCTACGAGGGGCAC
GGGGACGTGGCGAACGCCAGGGTTATCTTGGAGAAGGCCACCCTCGTCGC
TTACAGGTAGGCGGTGAAAACCGTGGACCCCAAGAAGGCGACGGGCATGC
TCCACAAGCTGTGGATGGACTTCGCCAAGTTCTACGAGGGGCACGGGGAC
GTGGCGAACGCCAGGGTTATCTTGGAGAAGGCCACCCTCGTCGCTTACAG
GTAG
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