mRNA_Ecto-sp9_F_contig9469.17613.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9469.17613.1
Unique NamemRNA_Ecto-sp9_F_contig9469.17613.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig9469.17613.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPQ0_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 1.840e-45
Identity = 83/87 (95.40%), Postives = 84/87 (96.55%), Query Frame = 1
Query:    1 LIVVNPLRRVPNPEMAEYMDRSLNPETPHPYAIAELAYHQMHLGAGRKVANQSIVVSGESGAGKTETSKIILTFLTHRSVGGVASLD 261
            LI VNPLRRVPNPEM +YMDRSLNPETPHPYAIAELAYHQM LGAGRKVANQSIVVSGESGAGKTETSKIILTFLTHRSVGGVASLD
Sbjct:   98 LIAVNPLRRVPNPEMTDYMDRSLNPETPHPYAIAELAYHQMRLGAGRKVANQSIVVSGESGAGKTETSKIILTFLTHRSVGGVASLD 184          
BLAST of mRNA_Ecto-sp9_F_contig9469.17613.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMS5_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 7.080e-41
Identity = 75/87 (86.21%), Postives = 83/87 (95.40%), Query Frame = 1
Query:    1 LIVVNPLRRVPNPEMAEYMDRSLNPETPHPYAIAELAYHQMHLGAGRKVANQSIVVSGESGAGKTETSKIILTFLTHRSVGGVASLD 261
            LI VNPL+RVP+P+M +YMD+SLNPETPHPYAIAELAYHQM LGAGRK+ANQSIVVSGESGAGKTETSKIIL+FLT RSVGGVA+LD
Sbjct:  112 LIAVNPLQRVPSPDMRDYMDKSLNPETPHPYAIAELAYHQMRLGAGRKMANQSIVVSGESGAGKTETSKIILSFLTRRSVGGVANLD 198          
BLAST of mRNA_Ecto-sp9_F_contig9469.17613.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA1_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 9.650e-41
Identity = 74/87 (85.06%), Postives = 83/87 (95.40%), Query Frame = 1
Query:    1 LIVVNPLRRVPNPEMAEYMDRSLNPETPHPYAIAELAYHQMHLGAGRKVANQSIVVSGESGAGKTETSKIILTFLTHRSVGGVASLD 261
            LI VNPL+RVP+P+M +YMD+SLNPETPHPYAIAELAYHQM LGAGRK+ANQSIVVSGESGAGKTETSKIIL+FLT RSVGG+A+LD
Sbjct:  112 LIAVNPLQRVPSPDMRDYMDKSLNPETPHPYAIAELAYHQMRLGAGRKLANQSIVVSGESGAGKTETSKIILSFLTRRSVGGIANLD 198          
BLAST of mRNA_Ecto-sp9_F_contig9469.17613.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ0_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 1.320e-40
Identity = 74/87 (85.06%), Postives = 81/87 (93.10%), Query Frame = 1
Query:    1 LIVVNPLRRVPNPEMAEYMDRSLNPETPHPYAIAELAYHQMHLGAGRKVANQSIVVSGESGAGKTETSKIILTFLTHRSVGGVASLD 261
            LI VNPLRR+P+P+++EYM+RSL+PE PHPYAIAELAYHQM LG GRK ANQSIVVSGESGAGKTETSKIILTFLTHRS GGVASLD
Sbjct:  114 LIAVNPLRRIPDPDVSEYMNRSLDPEAPHPYAIAELAYHQMRLGTGRKAANQSIVVSGESGAGKTETSKIILTFLTHRSAGGVASLD 200          
BLAST of mRNA_Ecto-sp9_F_contig9469.17613.1 vs.
Match: Myosin (motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUQ2_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 5.750e-38
Identity = 74/105 (70.48%), Postives = 81/105 (77.14%), Query Frame = 1
Query:    1 LIVVNPLRRVPNPEMAEYMDRSLNPETPHPYAIAE------------------LAYHQMHLGAGRKVANQSIVVSGESGAGKTETSKIILTFLTHRSVGGVASLD 261
            LI VNPLRR+P+P+++EYM+RSL+PE PHPYAIAE                  LAYHQM LG GRK ANQSIVVSGESGAGKTETSKIILTFLTHRS GGVASLD
Sbjct:   95 LIAVNPLRRIPDPDVSEYMNRSLDPEAPHPYAIAEVTFRSVPWSLVISAFPGALAYHQMRLGTGRKAANQSIVVSGESGAGKTETSKIILTFLTHRSAGGVASLD 199          
BLAST of mRNA_Ecto-sp9_F_contig9469.17613.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q7_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 2.280e-37
Identity = 70/87 (80.46%), Postives = 78/87 (89.66%), Query Frame = 1
Query:    1 LIVVNPLRRVPNPEMAEYMDRSLNPETPHPYAIAELAYHQMHLGAGRKVANQSIVVSGESGAGKTETSKIILTFLTHRSVGGVASLD 261
            LI VNPLR+V +PEM++YM+RSL+PE PHPYAIAEL+YHQM LG GRK ANQSIVVSGESGAGKTETSKIIL FLTHRSVGGV  L+
Sbjct:  120 LIAVNPLRKVADPEMSKYMNRSLDPEAPHPYAIAELSYHQMRLGGGRKAANQSIVVSGESGAGKTETSKIILRFLTHRSVGGVTGLE 206          
BLAST of mRNA_Ecto-sp9_F_contig9469.17613.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW4_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 1.080e-36
Identity = 69/87 (79.31%), Postives = 77/87 (88.51%), Query Frame = 1
Query:    1 LIVVNPLRRVPNPEMAEYMDRSLNPETPHPYAIAELAYHQMHLGAGRKVANQSIVVSGESGAGKTETSKIILTFLTHRSVGGVASLD 261
            LI VNPLRR+ +P M  +M+R LNPETPHPYAIAEL+YHQM LGAGRK ANQSI+VSGESGAGKTE+SKIIL FLTHRSVGGV SL+
Sbjct:  104 LIAVNPLRRLEDPPMESFMNRPLNPETPHPYAIAELSYHQMRLGAGRKAANQSIIVSGESGAGKTESSKIILKFLTHRSVGGVTSLE 190          
BLAST of mRNA_Ecto-sp9_F_contig9469.17613.1 vs.
Match: Myosin (motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLA2_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 2.990e-34
Identity = 69/97 (71.13%), Postives = 77/97 (79.38%), Query Frame = 1
Query:    1 LIVVNPLRRVPNPEMAEYMDRSLNPETPHPYAIAELAYHQMHLGAGRKVANQSIVVSGESGAGKTETSKIILT----------FLTHRSVGGVASLD 261
            LI VNPLRR+ +P M  +M+R LNPETPHPYAIAEL+YHQM LGAGRK ANQSI+VSGESGAGKTE+SKIIL           FLTHRSVGGV SL+
Sbjct:    8 LIAVNPLRRLEDPPMESFMNRPLNPETPHPYAIAELSYHQMRLGAGRKAANQSIIVSGESGAGKTESSKIILKRDNSAAVKKGFLTHRSVGGVTSLE 104          
BLAST of mRNA_Ecto-sp9_F_contig9469.17613.1 vs.
Match: P-loop (containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8E2_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.280e-30
Identity = 63/87 (72.41%), Postives = 72/87 (82.76%), Query Frame = 1
Query:    1 LIVVNPLRRVPNPEMAEYMDRSLNPETPHPYAIAELAYHQMHLGAGRKVANQSIVVSGESGAGKTETSKIILTFLTHRSVGGVASLD 261
            LI VNPLR VP+P M+E++D SL+PE PHPYAIAELAYHQM LG+G    NQSIVVSGESGAGKTETSKII+ +L HR+ GGV  LD
Sbjct:  104 LICVNPLRTVPDPPMSEFLDVSLDPEKPHPYAIAELAYHQMKLGSGG-CTNQSIVVSGESGAGKTETSKIIIKYLAHRTKGGVGGLD 189          
BLAST of mRNA_Ecto-sp9_F_contig9469.17613.1 vs.
Match: P-loop (containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7J1_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.500e-28
Identity = 59/87 (67.82%), Postives = 69/87 (79.31%), Query Frame = 1
Query:    1 LIVVNPLRRVPNPEMAEYMDRSLNPETPHPYAIAELAYHQMHLGAGRKVANQSIVVSGESGAGKTETSKIILTFLTHRSVGGVASLD 261
            LI VNPL+ VP+P M  Y+ + L+PE PHPYAIAELAYHQM LG G  + NQS+VVSGESGAGKTETSKII+ +L HR+ GGV  LD
Sbjct:  120 LICVNPLQVVPDPPMETYVGQQLDPEAPHPYAIAELAYHQMKLGTGG-LTNQSVVVSGESGAGKTETSKIIIKYLAHRTQGGVGGLD 205          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9469.17613.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.840e-4595.40protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPQ0... [more]
Uncharacterized7.080e-4186.21protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized9.650e-4185.06protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.320e-4085.06protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Myosin5.750e-3870.48motor domain-containing protein n=1 Tax=Ectocarpus... [more]
Uncharacterized2.280e-3780.46protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.080e-3679.31protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Myosin2.990e-3471.13motor domain-containing protein n=1 Tax=Ectocarpus... [more]
P-loop1.280e-3072.41containing nucleoside triphosphate hydrolase prote... [more]
P-loop2.500e-2867.82containing nucleoside triphosphate hydrolase prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9469contigEcto-sp9_F_contig9469:1729..2795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.8
Seed ortholog evalue4.6e-39
Seed eggNOG ortholog2880.D7FPQ0
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size263
Cds size261
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9469.17613.1prot_Ecto-sp9_F_contig9469.17613.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9469 1729..2795 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931029.9325922-CDS-Ecto-sp9_F_contig9469:1728..18331622931029.9325922-CDS-Ecto-sp9_F_contig9469:1728..1833Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9469 1729..1833 +
1692279000.2708585-CDS-Ecto-sp9_F_contig9469:1728..18331692279000.2708585-CDS-Ecto-sp9_F_contig9469:1728..1833Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9469 1729..1833 +
1622931029.9456415-CDS-Ecto-sp9_F_contig9469:2135..22481622931029.9456415-CDS-Ecto-sp9_F_contig9469:2135..2248Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9469 2136..2248 +
1692279000.282629-CDS-Ecto-sp9_F_contig9469:2135..22481692279000.282629-CDS-Ecto-sp9_F_contig9469:2135..2248Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9469 2136..2248 +
1622931029.961482-CDS-Ecto-sp9_F_contig9469:2752..27951622931029.961482-CDS-Ecto-sp9_F_contig9469:2752..2795Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9469 2753..2795 +
1692279000.2922552-CDS-Ecto-sp9_F_contig9469:2752..27951692279000.2922552-CDS-Ecto-sp9_F_contig9469:2752..2795Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9469 2753..2795 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9469.17613.1

>prot_Ecto-sp9_F_contig9469.17613.1 ID=prot_Ecto-sp9_F_contig9469.17613.1|Name=mRNA_Ecto-sp9_F_contig9469.17613.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=87bp
LIVVNPLRRVPNPEMAEYMDRSLNPETPHPYAIAELAYHQMHLGAGRKVA
NQSIVVSGESGAGKTETSKIILTFLTHRSVGGVASLD
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mRNA from alignment at Ecto-sp9_F_contig9469:1729..2795+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9469.17613.1 ID=mRNA_Ecto-sp9_F_contig9469.17613.1|Name=mRNA_Ecto-sp9_F_contig9469.17613.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1067bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9469:1729..2795+ (Ectocarpus species9 EcSCA_722f female)
CTGATTGTTGTTAACCCGTTGCGGAGAGTGCCGAACCCGGAAATGGCCGA GTACATGGATCGCTCCCTCAATCCAGAGACTCCGCATCCTTACGCTATCG CTGAGGTAAGCGTCACCCACCATCGGGAACATCTATAAAAGGTCAAAATA TTGCCGTTGCATCTGTCGGGTTTCCTGGCACGTGGTTTGCGGACAGCAGC AACGAGGACCCGTCCAGTTTGTCGAGGAGACGACACCCAACATTTGCCGG ATTGTACTCGGCGCATGGCCATCCTTGACTCTGCCAGCAGCGCTTGGGCA ACATCAGCTTTGCCCCGACCGCCTTGCATTATTGTGGTTGTAAGACCATA GGCCGTGACACCGCTTGTTCACCTGTGTCCCCTGTTGAACGTGTTTTGGT CTTGCAGCTGGCCTACCACCAGATGCACCTCGGTGCCGGCCGTAAAGTCG CCAACCAGTCTATCGTGGTGTCGGGAGAGAGCGGTGCAGGAAAGACTGAG ACCAGCAAGATTATTCTCACGTGAGCGCAAAGAGAAGGAAGCTACGTAGA CGAGCAGTTTCAGCGGCAGCATGTGACTTGTGTGGCTTTTGATGAGGTAC ATTTACACCTTCGGACAGGGAGAAACGTGTTCCGCTGCACAACACCAGCA CATGGATGTACCACCCTGGTTACAGCATGTTCCAAGCGTTCTTCGGCTGC TGGAGGCTGCTGCGTTGGGCATACGGTCTTAAAACAAGCGGGTCATGCGG GGGGTGGATGTAGTCGAAATTTGACTCTTGACTTGTCCTTGGTTCATTTG CGTTATACATGAGGCGGGAGGTCTACCTCGATCGTAGCGTTTCCCTGGGA TGCAGTAGCGTCTTTTAGCCTTTGGTGGCAAAAATGGCTTCCGTAGCTGA TCTCACCGCAACCCGTAGGCTGTGCTAAAGATCGTTCCCAGCGGTTGAAA TCTTTTTTCGTGTTGCGTCGGAATCGACCGCCTTGTGTACCTGAACCTGG CCGTTCCCTTGACGACGTCTCCAGCTTCCTGACACACCGATCAGTGGGGG GCGTGGCGAGCTTGGAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9469:1729..2795+

>mRNA_Ecto-sp9_F_contig9469.17613.1 ID=mRNA_Ecto-sp9_F_contig9469.17613.1|Name=mRNA_Ecto-sp9_F_contig9469.17613.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=522bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9469:1729..2795+ (Ectocarpus species9 EcSCA_722f female)
CTGATTGTTGTTAACCCGTTGCGGAGAGTGCCGAACCCGGAAATGGCCGA
GTACATGGATCGCTCCCTCAATCCAGAGACTCCGCATCCTTACGCTATCG
CTGAGCTGATTGTTGTTAACCCGTTGCGGAGAGTGCCGAACCCGGAAATG
GCCGAGTACATGGATCGCTCCCTCAATCCAGAGACTCCGCATCCTTACGC
TATCGCTGAGCTGGCCTACCACCAGATGCACCTCGGTGCCGGCCGTAAAG
TCGCCAACCAGTCTATCGTGGTGTCGGGAGAGAGCGGTGCAGGAAAGACT
GAGACCAGCAAGATTATTCTCACCTGGCCTACCACCAGATGCACCTCGGT
GCCGGCCGTAAAGTCGCCAACCAGTCTATCGTGGTGTCGGGAGAGAGCGG
TGCAGGAAAGACTGAGACCAGCAAGATTATTCTCACCTTCCTGACACACC
GATCAGTGGGGGGCGTGGCGAGCTTGGACCTTCCTGACACACCGATCAGT
GGGGGGCGTGGCGAGCTTGGAC
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