mRNA_Ecto-sp9_F_contig9469.17613.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig9469.17613.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPQ0_ECTSI) HSP 1 Score: 165 bits (417), Expect = 1.840e-45 Identity = 83/87 (95.40%), Postives = 84/87 (96.55%), Query Frame = 1
Query: 1 LIVVNPLRRVPNPEMAEYMDRSLNPETPHPYAIAELAYHQMHLGAGRKVANQSIVVSGESGAGKTETSKIILTFLTHRSVGGVASLD 261
LI VNPLRRVPNPEM +YMDRSLNPETPHPYAIAELAYHQM LGAGRKVANQSIVVSGESGAGKTETSKIILTFLTHRSVGGVASLD
Sbjct: 98 LIAVNPLRRVPNPEMTDYMDRSLNPETPHPYAIAELAYHQMRLGAGRKVANQSIVVSGESGAGKTETSKIILTFLTHRSVGGVASLD 184
BLAST of mRNA_Ecto-sp9_F_contig9469.17613.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMS5_ECTSI) HSP 1 Score: 152 bits (383), Expect = 7.080e-41 Identity = 75/87 (86.21%), Postives = 83/87 (95.40%), Query Frame = 1
Query: 1 LIVVNPLRRVPNPEMAEYMDRSLNPETPHPYAIAELAYHQMHLGAGRKVANQSIVVSGESGAGKTETSKIILTFLTHRSVGGVASLD 261
LI VNPL+RVP+P+M +YMD+SLNPETPHPYAIAELAYHQM LGAGRK+ANQSIVVSGESGAGKTETSKIIL+FLT RSVGGVA+LD
Sbjct: 112 LIAVNPLQRVPSPDMRDYMDKSLNPETPHPYAIAELAYHQMRLGAGRKMANQSIVVSGESGAGKTETSKIILSFLTRRSVGGVANLD 198
BLAST of mRNA_Ecto-sp9_F_contig9469.17613.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA1_9PHAE) HSP 1 Score: 151 bits (382), Expect = 9.650e-41 Identity = 74/87 (85.06%), Postives = 83/87 (95.40%), Query Frame = 1
Query: 1 LIVVNPLRRVPNPEMAEYMDRSLNPETPHPYAIAELAYHQMHLGAGRKVANQSIVVSGESGAGKTETSKIILTFLTHRSVGGVASLD 261
LI VNPL+RVP+P+M +YMD+SLNPETPHPYAIAELAYHQM LGAGRK+ANQSIVVSGESGAGKTETSKIIL+FLT RSVGG+A+LD
Sbjct: 112 LIAVNPLQRVPSPDMRDYMDKSLNPETPHPYAIAELAYHQMRLGAGRKLANQSIVVSGESGAGKTETSKIILSFLTRRSVGGIANLD 198
BLAST of mRNA_Ecto-sp9_F_contig9469.17613.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ0_ECTSI) HSP 1 Score: 151 bits (381), Expect = 1.320e-40 Identity = 74/87 (85.06%), Postives = 81/87 (93.10%), Query Frame = 1
Query: 1 LIVVNPLRRVPNPEMAEYMDRSLNPETPHPYAIAELAYHQMHLGAGRKVANQSIVVSGESGAGKTETSKIILTFLTHRSVGGVASLD 261
LI VNPLRR+P+P+++EYM+RSL+PE PHPYAIAELAYHQM LG GRK ANQSIVVSGESGAGKTETSKIILTFLTHRS GGVASLD
Sbjct: 114 LIAVNPLRRIPDPDVSEYMNRSLDPEAPHPYAIAELAYHQMRLGTGRKAANQSIVVSGESGAGKTETSKIILTFLTHRSAGGVASLD 200
BLAST of mRNA_Ecto-sp9_F_contig9469.17613.1 vs.
Match: Myosin (motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUQ2_9PHAE) HSP 1 Score: 140 bits (352), Expect = 5.750e-38 Identity = 74/105 (70.48%), Postives = 81/105 (77.14%), Query Frame = 1
Query: 1 LIVVNPLRRVPNPEMAEYMDRSLNPETPHPYAIAE------------------LAYHQMHLGAGRKVANQSIVVSGESGAGKTETSKIILTFLTHRSVGGVASLD 261
LI VNPLRR+P+P+++EYM+RSL+PE PHPYAIAE LAYHQM LG GRK ANQSIVVSGESGAGKTETSKIILTFLTHRS GGVASLD
Sbjct: 95 LIAVNPLRRIPDPDVSEYMNRSLDPEAPHPYAIAEVTFRSVPWSLVISAFPGALAYHQMRLGTGRKAANQSIVVSGESGAGKTETSKIILTFLTHRSAGGVASLD 199
BLAST of mRNA_Ecto-sp9_F_contig9469.17613.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q7_ECTSI) HSP 1 Score: 142 bits (357), Expect = 2.280e-37 Identity = 70/87 (80.46%), Postives = 78/87 (89.66%), Query Frame = 1
Query: 1 LIVVNPLRRVPNPEMAEYMDRSLNPETPHPYAIAELAYHQMHLGAGRKVANQSIVVSGESGAGKTETSKIILTFLTHRSVGGVASLD 261
LI VNPLR+V +PEM++YM+RSL+PE PHPYAIAEL+YHQM LG GRK ANQSIVVSGESGAGKTETSKIIL FLTHRSVGGV L+
Sbjct: 120 LIAVNPLRKVADPEMSKYMNRSLDPEAPHPYAIAELSYHQMRLGGGRKAANQSIVVSGESGAGKTETSKIILRFLTHRSVGGVTGLE 206
BLAST of mRNA_Ecto-sp9_F_contig9469.17613.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW4_ECTSI) HSP 1 Score: 140 bits (352), Expect = 1.080e-36 Identity = 69/87 (79.31%), Postives = 77/87 (88.51%), Query Frame = 1
Query: 1 LIVVNPLRRVPNPEMAEYMDRSLNPETPHPYAIAELAYHQMHLGAGRKVANQSIVVSGESGAGKTETSKIILTFLTHRSVGGVASLD 261
LI VNPLRR+ +P M +M+R LNPETPHPYAIAEL+YHQM LGAGRK ANQSI+VSGESGAGKTE+SKIIL FLTHRSVGGV SL+
Sbjct: 104 LIAVNPLRRLEDPPMESFMNRPLNPETPHPYAIAELSYHQMRLGAGRKAANQSIIVSGESGAGKTESSKIILKFLTHRSVGGVTSLE 190
BLAST of mRNA_Ecto-sp9_F_contig9469.17613.1 vs.
Match: Myosin (motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLA2_9PHAE) HSP 1 Score: 132 bits (331), Expect = 2.990e-34 Identity = 69/97 (71.13%), Postives = 77/97 (79.38%), Query Frame = 1
Query: 1 LIVVNPLRRVPNPEMAEYMDRSLNPETPHPYAIAELAYHQMHLGAGRKVANQSIVVSGESGAGKTETSKIILT----------FLTHRSVGGVASLD 261
LI VNPLRR+ +P M +M+R LNPETPHPYAIAEL+YHQM LGAGRK ANQSI+VSGESGAGKTE+SKIIL FLTHRSVGGV SL+
Sbjct: 8 LIAVNPLRRLEDPPMESFMNRPLNPETPHPYAIAELSYHQMRLGAGRKAANQSIIVSGESGAGKTESSKIILKRDNSAAVKKGFLTHRSVGGVTSLE 104
BLAST of mRNA_Ecto-sp9_F_contig9469.17613.1 vs.
Match: P-loop (containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8E2_9STRA) HSP 1 Score: 122 bits (307), Expect = 1.280e-30 Identity = 63/87 (72.41%), Postives = 72/87 (82.76%), Query Frame = 1
Query: 1 LIVVNPLRRVPNPEMAEYMDRSLNPETPHPYAIAELAYHQMHLGAGRKVANQSIVVSGESGAGKTETSKIILTFLTHRSVGGVASLD 261
LI VNPLR VP+P M+E++D SL+PE PHPYAIAELAYHQM LG+G NQSIVVSGESGAGKTETSKII+ +L HR+ GGV LD
Sbjct: 104 LICVNPLRTVPDPPMSEFLDVSLDPEKPHPYAIAELAYHQMKLGSGG-CTNQSIVVSGESGAGKTETSKIIIKYLAHRTKGGVGGLD 189
BLAST of mRNA_Ecto-sp9_F_contig9469.17613.1 vs.
Match: P-loop (containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7J1_9STRA) HSP 1 Score: 116 bits (290), Expect = 2.500e-28 Identity = 59/87 (67.82%), Postives = 69/87 (79.31%), Query Frame = 1
Query: 1 LIVVNPLRRVPNPEMAEYMDRSLNPETPHPYAIAELAYHQMHLGAGRKVANQSIVVSGESGAGKTETSKIILTFLTHRSVGGVASLD 261
LI VNPL+ VP+P M Y+ + L+PE PHPYAIAELAYHQM LG G + NQS+VVSGESGAGKTETSKII+ +L HR+ GGV LD
Sbjct: 120 LICVNPLQVVPDPPMETYVGQQLDPEAPHPYAIAELAYHQMKLGTGG-LTNQSVVVSGESGAGKTETSKIIIKYLAHRTQGGVGGLD 205 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9469.17613.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig9469.17613.1 >prot_Ecto-sp9_F_contig9469.17613.1 ID=prot_Ecto-sp9_F_contig9469.17613.1|Name=mRNA_Ecto-sp9_F_contig9469.17613.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=87bp LIVVNPLRRVPNPEMAEYMDRSLNPETPHPYAIAELAYHQMHLGAGRKVAback to top mRNA from alignment at Ecto-sp9_F_contig9469:1729..2795+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig9469.17613.1 ID=mRNA_Ecto-sp9_F_contig9469.17613.1|Name=mRNA_Ecto-sp9_F_contig9469.17613.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1067bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9469:1729..2795+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9469:1729..2795+ >mRNA_Ecto-sp9_F_contig9469.17613.1 ID=mRNA_Ecto-sp9_F_contig9469.17613.1|Name=mRNA_Ecto-sp9_F_contig9469.17613.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=522bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9469:1729..2795+ (Ectocarpus species9 EcSCA_722f female)back to top |