prot_Ecto-sp9_F_contig9258.17418.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig9258.17418.1
Unique Nameprot_Ecto-sp9_F_contig9258.17418.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length106
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9258.17418.1 vs.
Match: PHD-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY4_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.310e-19
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 0 
Query:   60 PRDDSIKPVVVSSLGRPHRVVVVGAGFAGLGAALELQKLGIEVIVVE 106
            PRDDSIKP+VVSSLGRPHRVVVVGAGFAGLGAALELQKLGIEVIVVE
Sbjct:  513 PRDDSIKPIVVSSLGRPHRVVVVGAGFAGLGAALELQKLGIEVIVVE 559
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9258.17418.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
PHD-type3.310e-1997.87domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 103..106
NoneNo IPR availableCOILSCoilCoilcoord: 1..31
IPR003953FAD-dependent oxidoreductase 2, FAD binding domainPFAMPF00890FAD_binding_2coord: 79..106
e-value: 1.3E-5
score: 24.5
IPR036188FAD/NAD(P)-binding domain superfamilyGENE3D3.50.50.60coord: 50..106
e-value: 4.0E-9
score: 38.0
IPR036188FAD/NAD(P)-binding domain superfamilySUPERFAMILY51905FAD/NAD(P)-binding domaincoord: 68..106

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9258contigEcto-sp9_F_contig9258:4..321 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9258.17418.1mRNA_Ecto-sp9_F_contig9258.17418.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig9258 4..321 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig9258.17418.1 ID=prot_Ecto-sp9_F_contig9258.17418.1|Name=mRNA_Ecto-sp9_F_contig9258.17418.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=106bp
MEKLRQQRRKQQKLQQQLQQSSRKKKRRQEDTSAAEEAKKERKVQGGGGD
PTATARKKKPRDDSIKPVVVSSLGRPHRVVVVGAGFAGLGAALELQKLGI
EVIVVE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003953FAD-binding_2
IPR036188FAD/NAD-bd_sf