mRNA_Ecto-sp9_F_contig9258.17418.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9258.17418.1
Unique NamemRNA_Ecto-sp9_F_contig9258.17418.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9258.17418.1 vs.
Match: PHD-type (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY4_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.310e-19
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:  178 PRDDSIKPVVVSSLGRPHRVVVVGAGFAGLGAALELQKLGIEVIVVE 318
            PRDDSIKP+VVSSLGRPHRVVVVGAGFAGLGAALELQKLGIEVIVVE
Sbjct:  513 PRDDSIKPIVVSSLGRPHRVVVVGAGFAGLGAALELQKLGIEVIVVE 559
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9258.17418.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
PHD-type3.310e-1997.87domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9258contigEcto-sp9_F_contig9258:4..321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_000880.1
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size318
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931001.4449227-CDS-Ecto-sp9_F_contig9258:3..3211622931001.4449227-CDS-Ecto-sp9_F_contig9258:3..321Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9258 4..321 -
1692278987.7533321-CDS-Ecto-sp9_F_contig9258:3..3211692278987.7533321-CDS-Ecto-sp9_F_contig9258:3..321Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9258 4..321 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9258.17418.1prot_Ecto-sp9_F_contig9258.17418.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9258 4..321 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9258.17418.1

>prot_Ecto-sp9_F_contig9258.17418.1 ID=prot_Ecto-sp9_F_contig9258.17418.1|Name=mRNA_Ecto-sp9_F_contig9258.17418.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=106bp
MEKLRQQRRKQQKLQQQLQQSSRKKKRRQEDTSAAEEAKKERKVQGGGGD
PTATARKKKPRDDSIKPVVVSSLGRPHRVVVVGAGFAGLGAALELQKLGI
EVIVVE
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mRNA from alignment at Ecto-sp9_F_contig9258:4..321-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9258.17418.1 ID=mRNA_Ecto-sp9_F_contig9258.17418.1|Name=mRNA_Ecto-sp9_F_contig9258.17418.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=318bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9258:4..321- (Ectocarpus species9 EcSCA_722f female)
ATGGAGAAGCTGCGGCAGCAACGGCGAAAGCAGCAGAAGCTGCAGCAGCA
GCTTCAACAGTCCTCCAGAAAAAAGAAGAGAAGACAGGAAGACACTAGCG
CTGCGGAGGAAGCTAAGAAGGAGCGAAAGGTGCAGGGCGGCGGCGGCGAC
CCTACGGCCACGGCACGAAAAAAGAAACCGCGAGATGACTCCATCAAGCC
TGTCGTAGTGAGCTCGTTGGGACGGCCGCACCGGGTCGTTGTTGTCGGGG
CCGGATTCGCAGGGCTTGGTGCTGCGCTCGAGCTGCAGAAACTGGGCATA
GAAGTTATCGTGGTGGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9258:4..321-

>mRNA_Ecto-sp9_F_contig9258.17418.1 ID=mRNA_Ecto-sp9_F_contig9258.17418.1|Name=mRNA_Ecto-sp9_F_contig9258.17418.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=636bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9258:4..321- (Ectocarpus species9 EcSCA_722f female)
ATGGAGAAGCTGCGGCAGCAACGGCGAAAGCAGCAGAAGCTGCAGCAGCA
GCTTCAACAGTCCTCCAGAAAAAAGAAGAGAAGACAGGAAGACACTAGCG
CTGCGGAGGAAGCTAAGAAGGAGCGAAAGGTGCAGGGCGGCGGCGGCGAC
CCTACGGCCACGGCACGAAAAAAGAAACCGCGAGATGACTCCATCAAGCC
TGTCGTAGTGAGCTCGTTGGGACGGCCGCACCGGGTCGTTGTTGTCGGGG
CCGGATTCGCAGGGCTTGGTGCTGCGCTCGAGCTGCAGAAACTGGGCATA
GAAGTTATCGTGGTGGAGATGGAGAAGCTGCGGCAGCAACGGCGAAAGCA
GCAGAAGCTGCAGCAGCAGCTTCAACAGTCCTCCAGAAAAAAGAAGAGAA
GACAGGAAGACACTAGCGCTGCGGAGGAAGCTAAGAAGGAGCGAAAGGTG
CAGGGCGGCGGCGGCGACCCTACGGCCACGGCACGAAAAAAGAAACCGCG
AGATGACTCCATCAAGCCTGTCGTAGTGAGCTCGTTGGGACGGCCGCACC
GGGTCGTTGTTGTCGGGGCCGGATTCGCAGGGCTTGGTGCTGCGCTCGAG
CTGCAGAAACTGGGCATAGAAGTTATCGTGGTGGAG
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