mRNA_Ecto-sp9_F_contig9067.17255.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig9067.17255.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ68_ECTSI) HSP 1 Score: 168 bits (425), Expect = 4.380e-49 Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1
Query: 1 FRVSDATMVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKHRLARAGLQDKKETSRKQIKEAKNRQKKIRGTGRRIAKHKAKKAAK 264
FRVSDATMVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKHRLARAGLQDKKETSRKQIKEAKNRQKKIRGTGRRIAKHKAKKAAK
Sbjct: 48 FRVSDATMVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKHRLARAGLQDKKETSRKQIKEAKNRQKKIRGTGRRIAKHKAKKAAK 135
BLAST of mRNA_Ecto-sp9_F_contig9067.17255.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2US90_9STRA) HSP 1 Score: 130 bits (328), Expect = 1.650e-34 Identity = 70/87 (80.46%), Postives = 75/87 (86.21%), Query Frame = 1
Query: 4 RVSDATMVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKHRLARAGLQDKKETSRKQIKEAKNRQKKIRGTGRRIAKHKAKKAAK 264
+V+D T V+LFGFRT FGG KSTGFCLIYDSVED KKFEPK RL R GL +K ETSRKQIKEAKNR KKIRGTGRRIA+HKAKKA K
Sbjct: 50 KVNDTTTVSLFGFRTAFGGNKSTGFCLIYDSVEDAKKFEPKFRLVRLGLAEKTETSRKQIKEAKNRGKKIRGTGRRIARHKAKKANK 136
BLAST of mRNA_Ecto-sp9_F_contig9067.17255.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI50_AURAN) HSP 1 Score: 128 bits (321), Expect = 1.890e-33 Identity = 65/87 (74.71%), Postives = 76/87 (87.36%), Query Frame = 1
Query: 4 RVSDATMVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKHRLARAGLQDKKETSRKQIKEAKNRQKKIRGTGRRIAKHKAKKAAK 264
+V+D +++LFGFR FGGGKSTGFCLIYDS E KK+EPK+RL R G+ +KKETSRKQIKEAKNR+KK+RGTGRRIA HKAKKAAK
Sbjct: 49 KVADTQLISLFGFRNKFGGGKSTGFCLIYDSAEAAKKYEPKYRLIRNGIVEKKETSRKQIKEAKNRKKKVRGTGRRIANHKAKKAAK 135
BLAST of mRNA_Ecto-sp9_F_contig9067.17255.1 vs.
Match: 40S (ribosomal protein S24 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6J8_9STRA) HSP 1 Score: 124 bits (312), Expect = 4.270e-32 Identity = 67/78 (85.90%), Postives = 70/78 (89.74%), Query Frame = 1
Query: 31 LFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKHRLARAGLQDKKETSRKQIKEAKNRQKKIRGTGRRIAKHKAKKAAK 264
LFGFRT FGGGKSTGF LIYD++ED KKFEPKHRL RAGL KKETSRKQIKEAKNR KKIRGTGRR+AKHKAKKA K
Sbjct: 60 LFGFRTAFGGGKSTGFALIYDTLEDAKKFEPKHRLVRAGLVVKKETSRKQIKEAKNRAKKIRGTGRRLAKHKAKKANK 137
BLAST of mRNA_Ecto-sp9_F_contig9067.17255.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WEF7_9STRA) HSP 1 Score: 124 bits (311), Expect = 7.840e-32 Identity = 66/92 (71.74%), Postives = 77/92 (83.70%), Query Frame = 1
Query: 1 FRVSDATMVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKHRLARAGLQDKKETSRKQIKEAKNRQKK----IRGTGRRIAKHKAKKAAK 264
++V+D ++++LFGFR FGGGKSTGFCLIYDS E KK+EPK+RL R G +KKETSRKQIKEAKNR+KK IRGTGRRIA HKAKKAAK
Sbjct: 54 YKVTDKSLISLFGFRNKFGGGKSTGFCLIYDSAESAKKYEPKYRLVRNGFVEKKETSRKQIKEAKNRKKKQIRQIRGTGRRIANHKAKKAAK 145
BLAST of mRNA_Ecto-sp9_F_contig9067.17255.1 vs.
Match: Hypothetical (protein n=2 Tax=Odontellaceae TaxID=2749909 RepID=A0A7S4HQJ4_9STRA) HSP 1 Score: 122 bits (306), Expect = 3.250e-31 Identity = 61/84 (72.62%), Postives = 72/84 (85.71%), Query Frame = 1
Query: 10 SDATMVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKHRLARAGLQDKKETSRKQIKEAKNRQKKIRGTGRRIAKHKAKKAA 261
+D + LFGFRT FGGGKSTGFCL+YDS E ++KFEPKHRL R G+Q+KKETSRK +KEAKN+ KK+RGTGR IAKHKAK+AA
Sbjct: 51 ADPKLTVLFGFRTKFGGGKSTGFCLVYDSEEALRKFEPKHRLVRQGIQEKKETSRKAMKEAKNKGKKVRGTGRSIAKHKAKRAA 134
BLAST of mRNA_Ecto-sp9_F_contig9067.17255.1 vs.
Match: 40S (ribosomal protein S24 n=3 Tax=Eukaryota TaxID=2759 RepID=A0A0P5B3P7_9CRUS) HSP 1 Score: 119 bits (299), Expect = 3.680e-30 Identity = 65/89 (73.03%), Postives = 72/89 (80.90%), Query Frame = 1
Query: 1 FRVSDATMVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKHRLARAGLQDKKETSRKQIKEAKNRQ-KKIRGTGRRIAKHKAKKAAK 264
++V DAT V L+GFRT FGGGKS+GFCLIYDS+ D K+FEPKHRL R GL DK ETSRKQIKEAKNR K RG GRRIA+HKA KA K
Sbjct: 50 YKVKDATTVFLYGFRTAFGGGKSSGFCLIYDSINDAKRFEPKHRLVRQGLADKVETSRKQIKEAKNRALKNPRGVGRRIARHKANKANK 138
BLAST of mRNA_Ecto-sp9_F_contig9067.17255.1 vs.
Match: 40S (ribosomal protein S24 n=3 Tax=Albugo TaxID=65356 RepID=F0WPH7_9STRA) HSP 1 Score: 119 bits (297), Expect = 7.080e-30 Identity = 63/88 (71.59%), Postives = 72/88 (81.82%), Query Frame = 1
Query: 1 FRVSDATMVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKHRLARAGLQDKKETSRKQIKEAKNRQKKIRGTGRRIAKHKAKKAAK 264
++V D V L+GFRT FGGGKSTGF LIYDSV D K+FEPK+RL R GL +K E+SRKQIKEAKNR+KKIRG GRRIA+HKA KA K
Sbjct: 50 YKVKDTNTVVLYGFRTQFGGGKSTGFGLIYDSVNDAKRFEPKYRLIRQGLAEKVESSRKQIKEAKNRKKKIRGVGRRIARHKAAKANK 137
BLAST of mRNA_Ecto-sp9_F_contig9067.17255.1 vs.
Match: Predicted (protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G2B5_PHATC) HSP 1 Score: 118 bits (296), Expect = 9.970e-30 Identity = 62/84 (73.81%), Postives = 69/84 (82.14%), Query Frame = 1
Query: 10 SDATMVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKHRLARAGLQDKKETSRKQIKEAKNRQKKIRGTGRRIAKHKAKKAA 261
+D + LFGFRT FGGGKSTGFCLIYD+ E M+KFEPKHRL R GL +KKE SRK IKEAKN+ KKIRGTG IAKHKAK+AA
Sbjct: 51 ADPKLTVLFGFRTKFGGGKSTGFCLIYDNEESMRKFEPKHRLIRQGLVEKKEQSRKAIKEAKNKAKKIRGTGASIAKHKAKRAA 134
BLAST of mRNA_Ecto-sp9_F_contig9067.17255.1 vs.
Match: Hypothetical (protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P839_9STRA) HSP 1 Score: 118 bits (296), Expect = 2.420e-29 Identity = 62/84 (73.81%), Postives = 71/84 (84.52%), Query Frame = 1
Query: 10 SDATMVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKHRLARAGLQDKKETSRKQIKEAKNRQKKIRGTGRRIAKHKAKKAA 261
+DA +V LFGFRT FGGGKSTGFCLIYDS + M+KFEPKHR+ RAG+ +KKE SRK IKEAKN+ KIRGTG IAKHKAK+AA
Sbjct: 82 ADAKLVVLFGFRTKFGGGKSTGFCLIYDSEDAMRKFEPKHRVIRAGMAEKKEQSRKAIKEAKNKGLKIRGTGASIAKHKAKRAA 165 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9067.17255.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig9067.17255.1 >prot_Ecto-sp9_F_contig9067.17255.1 ID=prot_Ecto-sp9_F_contig9067.17255.1|Name=mRNA_Ecto-sp9_F_contig9067.17255.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=82bp MVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKHRLARAGLQDKKETSback to top mRNA from alignment at Ecto-sp9_F_contig9067:741..2104+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig9067.17255.1 ID=mRNA_Ecto-sp9_F_contig9067.17255.1|Name=mRNA_Ecto-sp9_F_contig9067.17255.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1364bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9067:741..2104+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9067:741..2104+ >mRNA_Ecto-sp9_F_contig9067.17255.1 ID=mRNA_Ecto-sp9_F_contig9067.17255.1|Name=mRNA_Ecto-sp9_F_contig9067.17255.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=492bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9067:741..2104+ (Ectocarpus species9 EcSCA_722f female)back to top |