mRNA_Ecto-sp9_F_contig9019.17214.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9019.17214.1
Unique NamemRNA_Ecto-sp9_F_contig9019.17214.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9019.17214.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G071_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 5.920e-45
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 
Query:    1 VLAPAGSSLLKSATECGAMVIDNTFCLTGQCEACMAEVDGEVVLSCMVPVPADGRTDVEALVCNSDAAWDDMMV 222
            VLAPAGSSLLKSATECGAMVIDNTFCLTGQCEACMAEVDGEVVLSCMVPVPADGRTDVEALVCNSDAAWDDMMV
Sbjct:  139 VLAPAGSSLLKSATECGAMVIDNTFCLTGQCEACMAEVDGEVVLSCMVPVPADGRTDVEALVCNSDAAWDDMMV 212
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9019.17214.1 vs.
Match: 2Fe-2S (ferredoxin-type domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IZK8_PHYPA)

HSP 1 Score: 67.4 bits (163), Expect = 2.940e-12
Identity = 39/88 (44.32%), Postives = 49/88 (55.68%), Query Frame = 1 
Query:    1 VLAPAGSSLLKSATECGAMVIDNTFCLTGQCEACMAEVDG--------------EVVLSCMVPVPADGRTDVEALVCNSDAAWDDMMV 222
            V A  G +LLK A +CGA+VI + FC  G C  C  EV+G              E+V SC+ PVP+ GR  VE  + NSD  WDD+MV
Sbjct:   84 VSANVGDNLLKVAEQCGAIVISDDFCFEGSCCHCEMEVNGGAVEVGYRAEVKGGELVRSCLCPVPS-GRRTVEVNIINSDDGWDDLMV 170
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9019.17214.1 vs.
Match: Predicted (protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9RMX1_PHYPA)

HSP 1 Score: 67.4 bits (163), Expect = 6.080e-12
Identity = 39/88 (44.32%), Postives = 49/88 (55.68%), Query Frame = 1 
Query:    1 VLAPAGSSLLKSATECGAMVIDNTFCLTGQCEACMAEVDG--------------EVVLSCMVPVPADGRTDVEALVCNSDAAWDDMMV 222
            V A  G +LLK A +CGA+VI + FC  G C  C  EV+G              E+V SC+ PVP+ GR  VE  + NSD  WDD+MV
Sbjct:  127 VSANVGDNLLKVAEQCGAIVISDDFCFEGSCCHCEMEVNGGAVEVGYRAEVKGGELVRSCLCPVPS-GRRTVEVNIINSDDGWDDLMV 213
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9019.17214.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized5.920e-45100.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
2Fe-2S2.940e-1244.32ferredoxin-type domain-containing protein n=1 Tax=... [more]
Predicted6.080e-1244.32protein n=1 Tax=Physcomitrium patens TaxID=3218 Re... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9019contigEcto-sp9_F_contig9019:4630..5546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score153.7
Seed ortholog evalue3.4e-35
Seed eggNOG ortholog2880.D7G071
EggNOG OGs2F1MW@1,2T2MF@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size225
Cds size225
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930967.349455-CDS-Ecto-sp9_F_contig9019:4629..46901622930967.349455-CDS-Ecto-sp9_F_contig9019:4629..4690Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9019 4630..4690 -
1692278971.862957-CDS-Ecto-sp9_F_contig9019:4629..46901692278971.862957-CDS-Ecto-sp9_F_contig9019:4629..4690Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9019 4630..4690 -
1622930967.362334-CDS-Ecto-sp9_F_contig9019:5382..55461622930967.362334-CDS-Ecto-sp9_F_contig9019:5382..5546Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9019 5383..5546 -
1692278971.885329-CDS-Ecto-sp9_F_contig9019:5382..55461692278971.885329-CDS-Ecto-sp9_F_contig9019:5382..5546Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9019 5383..5546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9019.17214.1prot_Ecto-sp9_F_contig9019.17214.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9019 4630..5546 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9019.17214.1

>prot_Ecto-sp9_F_contig9019.17214.1 ID=prot_Ecto-sp9_F_contig9019.17214.1|Name=mRNA_Ecto-sp9_F_contig9019.17214.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=75bp
VLAPAGSSLLKSATECGAMVIDNTFCLTGQCEACMAEVDGEVVLSCMVPV
PADGRTDVEALVCNSDAAWDDMMV*
back to top

mRNA from alignment at Ecto-sp9_F_contig9019:4630..5546-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9019.17214.1 ID=mRNA_Ecto-sp9_F_contig9019.17214.1|Name=mRNA_Ecto-sp9_F_contig9019.17214.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=917bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9019:4630..5546- (Ectocarpus species9 EcSCA_722f female)
GTTCTTGCCCCGGCAGGCTCTAGCTTGCTCAAGAGCGCCACCGAGTGCGG
AGCCATGGTGATCGACAACACCTTCTGCTTGACAGGCCAGTGCGAGGCGT
GTATGGCGGAGGTGGACGGGGAGGTGGTGCTGTCTTGCATGGTGCCTGTG
CCGGCAGACGGAAGGTGAGCCCCATGGATGAATTCGTCTGTCTCCTTAAG
AACCCTCCGCCTCCCAACGTCAGTCAAACAGTTCCTGCTTCTAACGCGGG
AGCCTCCCCCCAAGGCGGTGATCGCGTTAAGCATGCGGTAGTAGGCAAGC
ACGACGTGAAAGAAGGGGAGTGAAAGACGGTTTGTTGTACCATATGTCAG
TCAGCGGTTGTGTGTAAGCCGGGGGAGGAGGTGTGTGTGTGTGTGTATGT
GTATAGAGCAAAGATGAGTGTTGTAGACTAGAGAGCAAGCAGGTGCCAAG
GAGTGGCCATTGCACGCGACTGCTCATGCGCCATCAGTGGGTGTGTGCGT
AGACGCAGACACGGTAGAGATTTGTGGACGTGGAGAAGTAAGTGGCTCGA
ACACACACGTCACAACCACGCGGAAAAAAAGCAAGTGTGTCTCACAAACA
AGCAAAGACGCATGTTCGAAATCGAAGGCTGAAGCGTGCTCTACGGGGCT
GTAGCCCATTTTTTTCGCGTCGAAGAAAAAAAATGATCCGAAATTGCGTG
GGTGCGAGCAAAATGCTTAAAGAGGCCACCTATGACTGAGATGATCGCTT
CGCTGACTTGCTTAACAACAATGTTTGATGTGACTGTTTATGAAGTAAAT
ATTTAAAACTTGTCTGTACCCTCGCTGCTATGCTCCCCTCCTCTTCACGT
TGCTAGGACTGACGTTGAGGCTCTGGTGTGTAACAGCGATGCCGCGTGGG
ACGACATGATGGTATAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9019:4630..5546-

>mRNA_Ecto-sp9_F_contig9019.17214.1 ID=mRNA_Ecto-sp9_F_contig9019.17214.1|Name=mRNA_Ecto-sp9_F_contig9019.17214.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=450bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9019:4630..5546- (Ectocarpus species9 EcSCA_722f female)
GTTCTTGCCCCGGCAGGCTCTAGCTTGCTCAAGAGCGCCACCGAGTGCGG
AGCCATGGTGATCGACAACACCTTCTGCTTGACAGGCCAGTGCGAGGCGT
GTATGGCGGAGGTGGACGGGGAGGTGGTGCTGTCTTGCATGGTGCCTGTG
CCGGCAGACGGAAGGTTCTTGCCCCGGCAGGCTCTAGCTTGCTCAAGAGC
GCCACCGAGTGCGGAGCCATGGTGATCGACAACACCTTCTGCTTGACAGG
CCAGTGCGAGGCGTGTATGGCGGAGGTGGACGGGGAGGTGGTGCTGTCTT
GCATGGTGCCTGTGCCGGCAGACGGAAGGACTGACGTTGAGGCTCTGGTG
TGTAACAGCGATGCCGCGTGGGACGACATGATGGTATAGGACTGACGTTG
AGGCTCTGGTGTGTAACAGCGATGCCGCGTGGGACGACATGATGGTATAG
back to top