prot_Ecto-sp9_F_contig9019.17214.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig9019.17214.1
Unique Name	prot_Ecto-sp9_F_contig9019.17214.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	75

Homology

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BLAST of mRNA_Ecto-sp9_F_contig9019.17214.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G071_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 5.920e-45
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0

Query:    1 VLAPAGSSLLKSATECGAMVIDNTFCLTGQCEACMAEVDGEVVLSCMVPVPADGRTDVEALVCNSDAAWDDMMV 74
            VLAPAGSSLLKSATECGAMVIDNTFCLTGQCEACMAEVDGEVVLSCMVPVPADGRTDVEALVCNSDAAWDDMMV
Sbjct:  139 VLAPAGSSLLKSATECGAMVIDNTFCLTGQCEACMAEVDGEVVLSCMVPVPADGRTDVEALVCNSDAAWDDMMV 212

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BLAST of mRNA_Ecto-sp9_F_contig9019.17214.1 vs.
Match: 2Fe-2S (ferredoxin-type domain-containing protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IZK8_PHYPA)

HSP 1 Score: 67.4 bits (163), Expect = 2.940e-12
Identity = 39/88 (44.32%), Postives = 49/88 (55.68%), Query Frame = 0

Query:    1 VLAPAGSSLLKSATECGAMVIDNTFCLTGQCEACMAEVDG--------------EVVLSCMVPVPADGRTDVEALVCNSDAAWDDMMV 74
            V A  G +LLK A +CGA+VI + FC  G C  C  EV+G              E+V SC+ PVP+ GR  VE  + NSD  WDD+MV
Sbjct:   84 VSANVGDNLLKVAEQCGAIVISDDFCFEGSCCHCEMEVNGGAVEVGYRAEVKGGELVRSCLCPVPS-GRRTVEVNIINSDDGWDDLMV 170

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BLAST of mRNA_Ecto-sp9_F_contig9019.17214.1 vs.
Match: Predicted (protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9RMX1_PHYPA)

HSP 1 Score: 67.4 bits (163), Expect = 6.080e-12
Identity = 39/88 (44.32%), Postives = 49/88 (55.68%), Query Frame = 0

Query:    1 VLAPAGSSLLKSATECGAMVIDNTFCLTGQCEACMAEVDG--------------EVVLSCMVPVPADGRTDVEALVCNSDAAWDDMMV 74
            V A  G +LLK A +CGA+VI + FC  G C  C  EV+G              E+V SC+ PVP+ GR  VE  + NSD  WDD+MV
Sbjct:  127 VSANVGDNLLKVAEQCGAIVISDDFCFEGSCCHCEMEVNGGAVEVGYRAEVKGGELVRSCLCPVPS-GRRTVEVNIINSDDGWDDLMV 213

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig9019.17214.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig9019.17214.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
Uncharacterized	5.920e-45	100.00	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
2Fe-2S	2.940e-12	44.32	ferredoxin-type domain-containing protein n=1 Tax=...	[more]
Predicted	6.080e-12	44.32	protein n=1 Tax=Physcomitrium patens TaxID=3218 Re...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 23..58 e-value: 2.1E-5 score: 26.0
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 4..53

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig9019	contig	Ecto-sp9_F_contig9019:4630..5546 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig9019.17214.1	mRNA_Ecto-sp9_F_contig9019.17214.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig9019 4630..5546 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig9019.17214.1 ID=prot_Ecto-sp9_F_contig9019.17214.1|Name=mRNA_Ecto-sp9_F_contig9019.17214.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=75bp
VLAPAGSSLLKSATECGAMVIDNTFCLTGQCEACMAEVDGEVVLSCMVPV
PADGRTDVEALVCNSDAAWDDMMV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012675	Beta-grasp_dom_sf
IPR036010	2Fe-2S_ferredoxin-like_sf