mRNA_Ecto-sp9_F_contig9013.17209.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9013.17209.1
Unique NamemRNA_Ecto-sp9_F_contig9013.17209.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9013.17209.1 vs.
Match: Poly(A) (ribonuclease subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT67_ECTSI)

HSP 1 Score: 412 bits (1060), Expect = 3.670e-136
Identity = 300/377 (79.58%), Postives = 303/377 (80.37%), Query Frame = 1 
Query:    1 QVSELQRQDMVDLGSLILALACRHPVTAASRGESLAFTAQHYTPELHNLAASLVSKKPPSVFEVCVATAHHTMDAMENTLMANGALQGHLASEYDNGRLLRLLLKLGTLNERPDQGGVGEWSETGERYILKLFRDYLFHQVDADGEPVMDFGHVYQSLSLLDAGNEEKILLTSRDKRSILVVSFADVKRCLEEAFAEVSGHAGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKGGSHAANGHGHHGGVLSRGGQGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHVVHGGVVPRHPGXXXXXXXXXXXXXXXXXXXXXXXPQXXXPXXXXXXXXGMVMMGPPMVGHXXXGPPQPPPY 1131
            QVSELQRQDMVDLGSLILALACRHPVT ASRGESLAFTAQHYTPELHNLAASLVSKKPPSVFEVCVATAHHTMDAMENTLMANGALQGHLASEYDNGRLLRLLLKLGTLNERPDQGGVGEWSETGERYILKLFRDYLFHQVDADGEPVMDFGHVYQSLSLLDAGNEEKILLTSRD+RS+LVVSFADVKRCLEEAFAEVSGH G                                                   S GG+ GS   XXXXX  XXXXXXXXXXXXX   XXXXXXXX       VHVVHGGVVP    XXXXXXXXXXXXXXXXXXXXXXXPQXXXPXXXXXXXXGMVMMGPPMVGHXXXGPPQPPPY
Sbjct:  357 QVSELQRQDMVDLGSLILALACRHPVTVASRGESLAFTAQHYTPELHNLAASLVSKKPPSVFEVCVATAHHTMDAMENTLMANGALQGHLASEYDNGRLLRLLLKLGTLNERPDQGGVGEWSETGERYILKLFRDYLFHQVDADGEPVMDFGHVYQSLSLLDAGNEEKILLTSRDRRSLLVVSFADVKRCLEEAFAEVSGHGG---------------------------------------------------SGGGRSGSNGGXXXXXAMXXXXXXXXXXXXXLVHXXXXXXXX-------VHVVHGGVVPHX--XXXXXXXXXXXXXXXXXXXXXXXPQXXXPXXXXXXXXGMVMMGPPMVGHXXXGPPQPPPY 673
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BLAST of mRNA_Ecto-sp9_F_contig9013.17209.1 vs.
Match: Pan3_PK (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPZ2_9PHAE)

HSP 1 Score: 385 bits (988), Expect = 3.240e-125
Identity = 192/197 (97.46%), Postives = 195/197 (98.98%), Query Frame = 1 
Query:    1 QVSELQRQDMVDLGSLILALACRHPVTAASRGESLAFTAQHYTPELHNLAASLVSKKPPSVFEVCVATAHHTMDAMENTLMANGALQGHLASEYDNGRLLRLLLKLGTLNERPDQGGVGEWSETGERYILKLFRDYLFHQVDADGEPVMDFGHVYQSLSLLDAGNEEKILLTSRDKRSILVVSFADVKRCLEEAFAE 591
            +VSELQRQDMVDLGSLILALACRHPVTAASRGESLAF AQHYTPELHNLAASLVSKKPPSVFEVCVATAHHTMDAMENTLMANGALQ HLASEYDNGRLLRLLLKLGT+NERPDQGGVGEWSETGERYILKLFRDYLFHQVDADGEPVMDFGHVYQSLSLLDAGNEEKILLTSRDKRS+LVVSFADVKRCLEEAFAE
Sbjct:  376 RVSELQRQDMVDLGSLILALACRHPVTAASRGESLAFMAQHYTPELHNLAASLVSKKPPSVFEVCVATAHHTMDAMENTLMANGALQSHLASEYDNGRLLRLLLKLGTVNERPDQGGVGEWSETGERYILKLFRDYLFHQVDADGEPVMDFGHVYQSLSLLDAGNEEKILLTSRDKRSLLVVSFADVKRCLEEAFAE 572
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BLAST of mRNA_Ecto-sp9_F_contig9013.17209.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K6Q0_9STRA)

HSP 1 Score: 207 bits (528), Expect = 5.500e-60
Identity = 104/201 (51.74%), Postives = 147/201 (73.13%), Query Frame = 1 
Query:    4 VSELQRQDMVDLGSLILALACRHPVTAASRGESLA----FTAQHYTPELHNLAASLVSKKPPSVFEVCVATAHHTMDAMENTLMANGALQGHLASEYDNGRLLRLLLKLGTLNERPDQGGVGEWSETGERYILKLFRDYLFHQVDADGEPVMDFGHVYQSLSLLDAGNEEKILLTSRDKRSILVVSFADVKRCLEEAFAEV 594
            ++E+QR+DMV LG +IL+LA R  +T ++  E+L     F AQHY+ +LH L ++L+SK PPSV+EVC   A+HTMD ++N      A    LA+EY++GR LRLLLKLG +NERP+ G   +W+ETG+ Y+LKLFRD++FHQ D  G P++D GHV  +L+ LDA + EKI+L SRD ++ILVVS+A+V  CLE A++E+
Sbjct:  164 LAEIQREDMVCLGRIILSLATRTMITPSTNEETLRACGIFLAQHYSSDLHALTSALLSK-PPSVYEVCGIMANHTMDELDNAYATCDAYSNQLAAEYESGRALRLLLKLGFVNERPEFGVNRQWAETGDCYVLKLFRDFVFHQADETGRPILDLGHVVTALNKLDASDTEKIVLASRDGKAILVVSYAEVANCLENAYSEL 363
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BLAST of mRNA_Ecto-sp9_F_contig9013.17209.1 vs.
Match: Hypothetical (protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D0I1_9STRA)

HSP 1 Score: 192 bits (488), Expect = 1.560e-55
Identity = 87/197 (44.16%), Postives = 139/197 (70.56%), Query Frame = 1 
Query:    4 VSELQRQDMVDLGSLILALACRHPVTAASRGESLAFTAQHYTPELHNLAASLVSKKPPSVFEVCVATAHHTMDAMENTLMANGALQGHLASEYDNGRLLRLLLKLGTLNERPDQGGVGEWSETGERYILKLFRDYLFHQVDADGEPVMDFGHVYQSLSLLDAGNEEKILLTSRDKRSILVVSFADVKRCLEEAFAEV 594
            +S+ QR+D++ LG  I+ +ACR   +  +  + +   AQH++ ++HN+  +L++K P S+F+VC A A H  + +        AL+ HL +E +NGRLL+LL+KLGT+NERP+      W++TG+RY+LKLFRDYLFHQ D +G+PV+D GH+  +L+ +DAG+ E+++LTS D++S+ V SF D++RC + AF E+
Sbjct:   10 LSDHQREDIIALGHTIIGVACRAYASQQNLQQCIMTVAQHFSADMHNVLFNLITK-PTSIFDVCTAIAPHAFEELNMMYGVADALEVHLGNEVENGRLLKLLIKLGTINERPEHQMNPNWADTGDRYVLKLFRDYLFHQTDDNGDPVVDIGHIVNALNKVDAGDTEQVILTSPDQQSVFVASFEDIRRCADSAFHEL 205
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BLAST of mRNA_Ecto-sp9_F_contig9013.17209.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RBK0_9STRA)

HSP 1 Score: 194 bits (493), Expect = 8.190e-54
Identity = 97/201 (48.26%), Postives = 142/201 (70.65%), Query Frame = 1 
Query:    4 VSELQRQDMVDLGSLILALACRHPVTAASRGESLAFTAQHYTPELHNLAASLVSKKPPSVFEVCVATAHHTMDAMENTLMANGALQGHLASEYDNGRLLRLLLKLGTLNERPDQGGVGEWSETGERYILKLFRDYLFHQVDADGEPVMDFGHVYQSLSLLDAGNEEKILLTSRDKRSILVVSFADVKRCLEEAFAEV-SGH 603
            V E QR+D+V LG  +L +A R  VT  +  +++   AQ Y+P +  L  SL++K PPSV E+C   A  + D + +       ++ HLA+E+ NGR+L+LL+ LG++NERP+      WSETG+RY+LKLFR+YLFHQVD +G+P +DFGH+  SL+ LDAG+ EKILL S D+R+ILVVSF ++K+C++ AFA++ +GH
Sbjct:  177 VVEHQREDIVSLGMTLLTVASRAIVTPQTINQAMIAIAQQYSPVMQTLLISLITK-PPSVAELCGVLASQSFDELGSVYAVADGIEHHLANEFQNGRILKLLVMLGSINERPEYRMDPRWSETGDRYMLKLFRNYLFHQVDEEGQPKVDFGHIIHSLNKLDAGDPEKILLASPDQRAILVVSFTELKQCMDRAFADLYAGH 376
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BLAST of mRNA_Ecto-sp9_F_contig9013.17209.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RA35_9STRA)

HSP 1 Score: 194 bits (493), Expect = 2.770e-52
Identity = 97/201 (48.26%), Postives = 142/201 (70.65%), Query Frame = 1 
Query:    4 VSELQRQDMVDLGSLILALACRHPVTAASRGESLAFTAQHYTPELHNLAASLVSKKPPSVFEVCVATAHHTMDAMENTLMANGALQGHLASEYDNGRLLRLLLKLGTLNERPDQGGVGEWSETGERYILKLFRDYLFHQVDADGEPVMDFGHVYQSLSLLDAGNEEKILLTSRDKRSILVVSFADVKRCLEEAFAEV-SGH 603
            V E QR+D+V LG  +L +A R  VT  +  +++   AQ Y+P +  L  SL++K PPSV E+C   A  + D + +       ++ HLA+E+ NGR+L+LL+ LG++NERP+      WSETG+RY+LKLFR+YLFHQVD +G+P +DFGH+  SL+ LDAG+ EKILL S D+R+ILVVSF ++K+C++ AFA++ +GH
Sbjct:  388 VVEHQREDIVSLGMTLLTVASRAIVTPQTINQAMIAIAQQYSPVMQTLLISLITK-PPSVAELCGVLASQSFDELGSVYAVADGIEHHLANEFQNGRILKLLVMLGSINERPEYRMDPRWSETGDRYMLKLFRNYLFHQVDEEGQPKVDFGHIIHSLNKLDAGDPEKILLASPDQRAILVVSFTELKQCMDRAFADLYAGH 587
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BLAST of mRNA_Ecto-sp9_F_contig9013.17209.1 vs.
Match: Protein (kinase domain-containing protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A3K7_9STRA)

HSP 1 Score: 187 bits (475), Expect = 9.320e-51
Identity = 88/199 (44.22%), Postives = 136/199 (68.34%), Query Frame = 1 
Query:    1 QVSELQRQDMVDLGSLILALACRHPVTAASR-GESLAFTAQHYTPELHNLAASLVSKKPPSVFEVCVATAHHTMDAMENTLMANGALQGHLASEYDNGRLLRLLLKLGTLNERPDQGGVGEWSETGERYILKLFRDYLFHQVDADGEPVMDFGHVYQSLSLLDAGNEEKILLTSRDKRSILVVSFADVKRCLEEAFAEV 594
            +V  LQ++D+ ++G ++L++ CRH +T A+   + L   AQ Y+  L  +  SLV  +  +V  + +A   HTM+ ++N L     L+  LA EY NGR+L L+LKLG +NERP+      WSETG+RY+LKLFRDY+FHQVD +  PV+DFGH+  +L+ LD  + EKILL+SRD  S+LV S+A+V +C++++F+++
Sbjct:  308 RVESLQQEDIANVGKVVLSIGCRHDITPATNISDLLGQFAQSYSANLFEIVKSLVQNECTTVQSLGIAVHDHTMNELDNQLSLTDELESQLACEYQNGRMLLLMLKLGLINERPEFNMDSSWSETGDRYLLKLFRDYVFHQVDEENRPVLDFGHIIDALNKLDGSSAEKILLSSRDGNSVLVASYAEVHKCVKQSFSDL 506
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BLAST of mRNA_Ecto-sp9_F_contig9013.17209.1 vs.
Match: Predicted (protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GDD9_PHATC)

HSP 1 Score: 181 bits (458), Expect = 1.850e-48
Identity = 91/204 (44.61%), Postives = 138/204 (67.65%), Query Frame = 1 
Query:    1 QVSELQRQDMVDLGSLILALACRHPVTAASRGESLA----FTAQHYTPELHNLAASLV--SKKPPSVFEVCVATAHHTMDAMENTLMANGALQGHLASEYDNGRLLRLLLKLGTLNERPDQGGVGEWSETGERYILKLFRDYLFHQVDADGEPVMDFGHVYQSLSLLDAGNEEKILLTSRDKRSILVVSFADVKRCLEEAFAEV 594
            +V++LQR D+ DLG LIL+LA    +T ++  E++     F AQ+Y+P+LHNLA +L+  + +PPS+ +V    A    D  +    +   ++  L++EYD+ R+LR+LLKL  +NERP+ G    W+++G+ Y L LFRDY+FHQ D  G PVMD GHV  +L+ LD  +EEKI+L+SRD +S++V S+A++ RCLE AF E+
Sbjct:  304 KVADLQRHDVRDLGRLILSLASGTEITHSTDMETVGSCEQFLAQNYSPDLHNLAMTLIRSTPQPPSILDVSRVVAQRAFDEQDAAYQSFDRMERALSAEYDSSRMLRILLKLSYVNERPEFGPNRRWAQSGDCYALTLFRDYVFHQADGGGYPVMDLGHVISALNKLDGADEEKIVLSSRDGKSLMVASYAEIARCLENAFQEL 507
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BLAST of mRNA_Ecto-sp9_F_contig9013.17209.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BWX0_9STRA)

HSP 1 Score: 172 bits (435), Expect = 1.900e-48
Identity = 76/159 (47.80%), Postives = 117/159 (73.58%), Query Frame = 1 
Query:  118 QHYTPELHNLAASLVSKKPPSVFEVCVATAHHTMDAMENTLMANGALQGHLASEYDNGRLLRLLLKLGTLNERPDQGGVGEWSETGERYILKLFRDYLFHQVDADGEPVMDFGHVYQSLSLLDAGNEEKILLTSRDKRSILVVSFADVKRCLEEAFAEV 594
            QHY+ +LHN+  SL++K PP +F++C   A    D ++       AL+ HL +E +NGRLL+L++KLG +NERP+      W+ETG+RY+LKLFRDYLFHQVD +GE V+D GH+   L+ +D+ ++EK++L++ D+ S+LV SF+DV+RC++E+F E+
Sbjct:    8 QHYSQDLHNILLSLITK-PPDIFQLCATIAPKAFDELDMMYGVADALESHLTNEAENGRLLKLMIKLGCINERPEYQMNPHWAETGDRYVLKLFRDYLFHQVDENGEAVVDAGHIVNGLNKVDSNHDEKVVLSAPDQSSVLVASFSDVRRCVDESFHEL 165
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BLAST of mRNA_Ecto-sp9_F_contig9013.17209.1 vs.
Match: PAN2-PAN3 (deadenylation complex subunit PAN3 n=2 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9N824_SAICN)

HSP 1 Score: 181 bits (460), Expect = 2.460e-48
Identity = 86/200 (43.00%), Postives = 134/200 (67.00%), Query Frame = 1 
Query:    4 VSELQRQDMVDLGSLILALACRHPVTAASRGESLAFTAQHYTPELHNLAASLVSKKPPS--VFEVCVATAHHTMDAMENTLMANGALQGHLASEYDNGRLLRLLLKLGTLNERPDQGGVGEWSETGERYILKLFRDYLFHQVDADGEPVMDFGHVYQSLSLLDAGNEEKILLTSRDKRSILVVSFADVKRCLEEAFAEVS 597
            + E Q+ D++ LG LI+++AC  P+ A     ++ F ++HY+ EL ++   L+SK  P+  + E+    A HT+    + L  N  ++  LA E +NGR+ RLL KLG +NERP+     +WSETG+RY++KLFRDY+FHQVD  G PV+D  HV   L+ LD G++EK++L SRD++S LV+S+ ++K C+E AF+++S
Sbjct:  374 LEEWQQDDLLQLGRLIVSIACGSPLAANDFPSAVDFISRHYSVELKDIIVYLISKPSPTKTISEIVTLIADHTIQDFNSALHFNDNIEAALARELENGRIARLLTKLGFINERPEYDHDPQWSETGDRYLIKLFRDYVFHQVDEQGNPVVDMAHVLSCLNKLDVGSDEKVMLVSRDEQSCLVLSYREIKSCIEVAFSQLS 573
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9013.17209.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Poly(A)3.670e-13679.58ribonuclease subunit n=1 Tax=Ectocarpus siliculosu... [more]
Pan3_PK3.240e-12597.46domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Hypothetical5.500e-6051.74protein n=1 Tax=Leptocylindrus danicus TaxID=16351... [more]
Hypothetical1.560e-5544.16protein n=1 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Hypothetical8.190e-5448.26protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Hypothetical2.770e-5248.26protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Protein9.320e-5144.22kinase domain-containing protein (Fragment) n=1 Ta... [more]
Predicted1.850e-4844.61protein n=2 Tax=Phaeodactylum tricornutum TaxID=28... [more]
Hypothetical1.900e-4847.80protein (Fragment) n=1 Tax=Florenciella parvula Ta... [more]
PAN2-PAN32.460e-4843.00deadenylation complex subunit PAN3 n=2 Tax=Saitoel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9013contigEcto-sp9_F_contig9013:482..3466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score397.1
Seed ortholog evalue8.8e-108
Seed eggNOG ortholog2880.D8LT67
Preferred namePAN3
KEGG koko:K12572
KEGG Pathwayko03018,map03018
GOsGO:0000003,GO:0000288,GO:0000289,GO:0000290,GO:0000932,GO:0000956,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006605,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010603,GO:0010605,GO:0010606,GO:0010629,GO:0010638,GO:0015031,GO:0015833,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0031251,GO:0031334,GO:0032991,GO:0033036,GO:0033043,GO:0034613,GO:0034641,GO:0034655,GO:0035770,GO:0036464,GO:0042886,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:1901360,GO:1901361,GO:1901575,GO:1902115,GO:1902117,GO:1990904
EggNOG free text desc.nuclear-transcribed mRNA poly(A) tail shortening
EggNOG OGsKOG3741@1,KOG3741@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionPoly(A) ribonuclease subunit
Ec32 orthologEc-12_005460.1
Exons4
Model size1134
Cds size1107
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9013.17209.1prot_Ecto-sp9_F_contig9013.17209.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9013 509..3466 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930966.6247444-UTR-Ecto-sp9_F_contig9013:481..5081622930966.6247444-UTR-Ecto-sp9_F_contig9013:481..508Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9013 482..508 +
1692278971.5566747-UTR-Ecto-sp9_F_contig9013:481..5081692278971.5566747-UTR-Ecto-sp9_F_contig9013:481..508Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9013 482..508 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930966.66225-CDS-Ecto-sp9_F_contig9013:508..6701622930966.66225-CDS-Ecto-sp9_F_contig9013:508..670Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9013 509..670 +
1692278971.5683086-CDS-Ecto-sp9_F_contig9013:508..6701692278971.5683086-CDS-Ecto-sp9_F_contig9013:508..670Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9013 509..670 +
1622930966.6825788-CDS-Ecto-sp9_F_contig9013:1446..15321622930966.6825788-CDS-Ecto-sp9_F_contig9013:1446..1532Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9013 1447..1532 +
1692278971.5849285-CDS-Ecto-sp9_F_contig9013:1446..15321692278971.5849285-CDS-Ecto-sp9_F_contig9013:1446..1532Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9013 1447..1532 +
1622930966.7047174-CDS-Ecto-sp9_F_contig9013:1911..20561622930966.7047174-CDS-Ecto-sp9_F_contig9013:1911..2056Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9013 1912..2056 +
1692278971.5968635-CDS-Ecto-sp9_F_contig9013:1911..20561692278971.5968635-CDS-Ecto-sp9_F_contig9013:1911..2056Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9013 1912..2056 +
1622930966.72772-CDS-Ecto-sp9_F_contig9013:2752..34661622930966.72772-CDS-Ecto-sp9_F_contig9013:2752..3466Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9013 2753..3466 +
1692278971.6063004-CDS-Ecto-sp9_F_contig9013:2752..34661692278971.6063004-CDS-Ecto-sp9_F_contig9013:2752..3466Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9013 2753..3466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9013.17209.1

>prot_Ecto-sp9_F_contig9013.17209.1 ID=prot_Ecto-sp9_F_contig9013.17209.1|Name=mRNA_Ecto-sp9_F_contig9013.17209.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=369bp
MVDLGSLILALACRHPVTAASRGESLAFTAQHYTPELHNLAASLVSKKPP
SVFEVCVATAHHTMDAMENTLMANGALQGHLASEYDNGRLLRLLLKLGTL
NERPDQGGVGEWSETGERYILKLFRDYLFHQVDADGEPVMDFGHVYQSLS
LLDAGNEEKILLTSRDKRSILVVSFADVKRCLEEAFAEVSGHAGPPPQQR
QQQQQQQQQHAASAPSSSVGGGGGGGGNKGGSHAANGHGHHGGVLSRGGQ
GGSGAGGSGSNGGGRGGMAMGIGGVHGGGHAGGLVHGGGVHGGGVHVVHG
GVVPRHPGGGGGGGGGGGGVVVPMGHHPHHHPQHHHPHHPQHHHPGMVMM
GPPMVGHHPGGPPQPPPY*
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mRNA from alignment at Ecto-sp9_F_contig9013:482..3466+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9013.17209.1 ID=mRNA_Ecto-sp9_F_contig9013.17209.1|Name=mRNA_Ecto-sp9_F_contig9013.17209.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2985bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9013:482..3466+ (Ectocarpus species9 EcSCA_722f female)
CAGGTGTCCGAGCTGCAGCGGCAAGATATGGTGGACCTGGGAAGCCTCAT
CCTGGCGCTGGCGTGCCGACATCCCGTCACCGCCGCCTCCCGGGGGGAAT
CGCTGGCGTTCACGGCGCAACACTACACGCCCGAGCTGCACAATCTGGCG
GCGTCGCTCGTGTCGAAGAAGCCTCCCAGCGTTTTCGAGGTGAGAGCGGT
GGTGGTTTCAATACTGTCGTAAGCAGCGACTCGACAAGATCTATGTACAG
CAAAGAAGGCGGACACCCAGTAGGGACGCATGCATGCATACATTGCTGGA
TGGGAAAACAATGCATGAAACGTCAACAAAAATATTGTGCAGAACCAAAA
GAATCTTTCTGTAGAATATATTTGTGAGTTTTTTTCTTCACGTATCATAT
ACGTATTGTAGCGATCTGTTGTGCGGGTTTGGAAAACGCCGAGAGAACAA
AGTGCGAATTGCGGTCCTTCGTGCACACTCCTTGCCGATCTTGTGGGGCA
CGCGCACAGCACACAGACTACACCGGAAGCACTGGAGTGCTTCGTATGGC
GGTAGTGGGGTGCGGTAGTGCTAGCCGACGAAGCAAACACAGCAGCAACG
GTTGTTGGGTTGACACGAAAGGCCTGTCTGCGGTTGAGCAACGTGGTGGT
TTAGGGACGAAGGGGGAGAGAAAAGAGAGAGGGAGGGGCGGGCTGGGGAA
GGGACAGAACGCAATGCCCGCTGTCCGTGGAGAGAGCGAGGACAGAACGA
GAACGTATTCGGTTGCGATCGTTGCCAAGACGGAAGATGGGCTTTGGCAG
CGTTTGTTGGATGCAATTGACCGGACGGGTGTTTGTTTTTGTTCTTTCGC
TAGATTTTGTGCCAACATGGGCATTCATTGTGTGGCGACGTGCGAATCAC
AATTCTGCTGTTGTTGAGGGACTGCATACCTTACGAAGCTTTTGTTGTTG
TTATTTTACGGTCAGGTCTGCGTGGCAACCGCCCATCACACCATGGACGC
CATGGAGAACACGCTGATGGCAAACGGCGCGCTTCAGGGCCACTTGGCAA
GGTAGGGGCGGGACGACACAACGAGAGAGAGAGAGAGAGCGTGTGCAATG
GGTGTTAGTTTTTCAGTCCTATGGTGGGTGCGAATGGCGACAGCGTGTGC
GCAGCAAAAGCCAGCCGCCGCTGTTCCCCTACGCGTGTGTCTCGTTGTCG
CCTTATCTTTCTCTTAGTCGGCCCTCCCTGTGATGTTCGTCGCTTGTGCT
GGACTCCAACCTTACCTCGCTTGTCTTGCCACTTCCCACCACTGCCTTTG
TGTGTTGTTTGACGACGTCCTTCTCCCCTGAACGATTATTCCGGCGCGCC
CTGGGGGGGGGGCGCGGACAAAACGAATGGCTTCACATGGGAACACAACG
ACCTACGATTGCGACAAACACACAATACAGCGAGTACGACAACGGGCGGC
TGCTGCGGCTGCTCCTGAAGCTGGGCACTCTGAACGAGAGGCCCGACCAG
GGAGGTGTCGGGGAGTGGTCGGAGACCGGGGAGCGTTACATCCTCAAGCT
CTTCAGGGACTACCTCTTCCACCAGGTGCGGGCGTTCGTGCGTTCTCGCC
TCTGTCCGTGCTTGCAGCTTTGTTTCCGGTGCTCTCGTTGCCCTTTTGTG
TGTGTGTGTGTGTGGTTGATGTTTGTTTGTCTTCTTCCTTGCGGTTATTT
TGTTGTTGTTGCATCAGTTTGGTGTGTGGTGAGTCGTGCGTGGGTGTACT
TGTGCCCAGCCCTCCCAGTATGTCAGACCAGCGTGTGTGAGGAAATGTAT
GGTTAGGCTCTTTTAGGTTTCCACGAAGGAGGAGGCTGGCTCTTAGTTGG
GCGAGACTTGCAGGGTGGTATAGTATATGGTACTGGCACCGGCTGGGCTG
CGTTTTTAGTCTCTCCCTGTTAGACGCTACCTGTCCAAGTTTCGGGTGTC
AACGGCAGCGACGACGACGCCGACACCGATGAATCCCGCAATAGGACCGA
CGTATTTTCCTTGGTCAGCCGGCTGGCTCGGTCGATACTAGTTCAAGACA
CACACACATACTTCGAAGTACAAATTGGCACGCCGGTTAGCGCGGTCGAT
GCATATAACCATGGCACACAGACGCACACACACAGGTGATGGCCTTTGTA
AGTATTTTTGTGTTTTGAACCGCTTTTGAGACTGGCTTCTCTTCATTGGT
CAGCCGGCCAAATAGCGCGCCCGGTGTTAACTCCAAAAAACACGCGTACA
CATTTGTACGCATGTACACAGGTGGATGCGGACGGCGAGCCGGTGATGGA
CTTCGGGCATGTATACCAGAGCCTGTCCCTCCTCGACGCCGGTAACGAGG
AGAAGATCCTCCTCACCAGCAGGGACAAGCGCTCTATCTTGGTCGTGTCG
TTCGCGGACGTGAAGCGCTGCCTCGAGGAGGCCTTCGCCGAGGTCTCCGG
CCACGCCGGCCCGCCGCCCCAGCAGCGACAGCAGCAGCAACAGCAGCAGC
AACAGCATGCGGCCTCCGCTCCCTCCTCCTCCGTTGGCGGCGGTGGTGGC
GGTGGCGGCAACAAGGGAGGCAGTCATGCCGCGAACGGCCATGGCCATCA
CGGCGGCGTGCTTTCTCGCGGCGGCCAGGGCGGCAGCGGCGCGGGGGGAA
GCGGCAGCAACGGCGGCGGCCGGGGCGGGATGGCGATGGGGATCGGGGGC
GTGCACGGAGGGGGCCACGCGGGGGGTCTCGTGCACGGCGGCGGGGTACA
CGGGGGCGGGGTTCACGTCGTCCACGGAGGGGTCGTGCCGCGCCACCCGG
GCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGTGGTGGTCCCGATG
GGGCACCACCCTCACCACCATCCCCAGCACCACCACCCCCACCACCCCCA
GCACCACCACCCCGGCATGGTGATGATGGGGCCGCCGATGGTGGGGCACC
ACCCTGGGGGGCCTCCGCAGCCACCGCCGTACTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9013:482..3466+

>mRNA_Ecto-sp9_F_contig9013.17209.1 ID=mRNA_Ecto-sp9_F_contig9013.17209.1|Name=mRNA_Ecto-sp9_F_contig9013.17209.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2214bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9013:482..3466+ (Ectocarpus species9 EcSCA_722f female)
ATGGTGGACCTGGGAAGCCTCATCCTGGCGCTGGCGTGCCGACATCCCGT
CACCGCCGCCTCCCGGGGGGAATCGCTGGCGTTCACGGCGCAACACTACA
CGCCCGAGCTGCACAATCTGGCGGCGTCGCTCGTGTCGAAGAAGCCTCCC
AGCGTTTTCGAGATGGTGGACCTGGGAAGCCTCATCCTGGCGCTGGCGTG
CCGACATCCCGTCACCGCCGCCTCCCGGGGGGAATCGCTGGCGTTCACGG
CGCAACACTACACGCCCGAGCTGCACAATCTGGCGGCGTCGCTCGTGTCG
AAGAAGCCTCCCAGCGTTTTCGAGGTCTGCGTGGCAACCGCCCATCACAC
CATGGACGCCATGGAGAACACGCTGATGGCAAACGGCGCGCTTCAGGGCC
ACTTGGCAAGGTCTGCGTGGCAACCGCCCATCACACCATGGACGCCATGG
AGAACACGCTGATGGCAAACGGCGCGCTTCAGGGCCACTTGGCAAGCGAG
TACGACAACGGGCGGCTGCTGCGGCTGCTCCTGAAGCTGGGCACTCTGAA
CGAGAGGCCCGACCAGGGAGGTGTCGGGGAGTGGTCGGAGACCGGGGAGC
GTTACATCCTCAAGCTCTTCAGGGACTACCTCTTCCACCAGCGAGTACGA
CAACGGGCGGCTGCTGCGGCTGCTCCTGAAGCTGGGCACTCTGAACGAGA
GGCCCGACCAGGGAGGTGTCGGGGAGTGGTCGGAGACCGGGGAGCGTTAC
ATCCTCAAGCTCTTCAGGGACTACCTCTTCCACCAGGTGGATGCGGACGG
CGAGCCGGTGATGGACTTCGGGCATGTATACCAGAGCCTGTCCCTCCTCG
ACGCCGGTAACGAGGAGAAGATCCTCCTCACCAGCAGGGACAAGCGCTCT
ATCTTGGTCGTGTCGTTCGCGGACGTGAAGCGCTGCCTCGAGGAGGCCTT
CGCCGAGGTCTCCGGCCACGCCGGCCCGCCGCCCCAGCAGCGACAGCAGC
AGCAACAGCAGCAGCAACAGCATGCGGCCTCCGCTCCCTCCTCCTCCGTT
GGCGGCGGTGGTGGCGGTGGCGGCAACAAGGGAGGCAGTCATGCCGCGAA
CGGCCATGGCCATCACGGCGGCGTGCTTTCTCGCGGCGGCCAGGGCGGCA
GCGGCGCGGGGGGAAGCGGCAGCAACGGCGGCGGCCGGGGCGGGATGGCG
ATGGGGATCGGGGGCGTGCACGGAGGGGGCCACGCGGGGGGTCTCGTGCA
CGGCGGCGGGGTACACGGGGGCGGGGTTCACGTCGTCCACGGAGGGGTCG
TGCCGCGCCACCCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC
GTGGTGGTCCCGATGGGGCACCACCCTCACCACCATCCCCAGCACCACCA
CCCCCACCACCCCCAGCACCACCACCCCGGCATGGTGATGATGGGGCCGC
CGATGGTGGGGCACCACCCTGGGGGGCCTCCGCAGCCACCGCCGTACTGA
GTGGATGCGGACGGCGAGCCGGTGATGGACTTCGGGCATGTATACCAGAG
CCTGTCCCTCCTCGACGCCGGTAACGAGGAGAAGATCCTCCTCACCAGCA
GGGACAAGCGCTCTATCTTGGTCGTGTCGTTCGCGGACGTGAAGCGCTGC
CTCGAGGAGGCCTTCGCCGAGGTCTCCGGCCACGCCGGCCCGCCGCCCCA
GCAGCGACAGCAGCAGCAACAGCAGCAGCAACAGCATGCGGCCTCCGCTC
CCTCCTCCTCCGTTGGCGGCGGTGGTGGCGGTGGCGGCAACAAGGGAGGC
AGTCATGCCGCGAACGGCCATGGCCATCACGGCGGCGTGCTTTCTCGCGG
CGGCCAGGGCGGCAGCGGCGCGGGGGGAAGCGGCAGCAACGGCGGCGGCC
GGGGCGGGATGGCGATGGGGATCGGGGGCGTGCACGGAGGGGGCCACGCG
GGGGGTCTCGTGCACGGCGGCGGGGTACACGGGGGCGGGGTTCACGTCGT
CCACGGAGGGGTCGTGCCGCGCCACCCGGGCGGCGGCGGCGGCGGCGGCG
GCGGCGGCGGCGGCGTGGTGGTCCCGATGGGGCACCACCCTCACCACCAT
CCCCAGCACCACCACCCCCACCACCCCCAGCACCACCACCCCGGCATGGT
GATGATGGGGCCGCCGATGGTGGGGCACCACCCTGGGGGGCCTCCGCAGC
CACCGCCGTACTGA
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