mRNA_Ecto-sp9_F_contig10118.158.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10118.158.1
Unique NamemRNA_Ecto-sp9_F_contig10118.158.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10118.158.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR48_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 3.880e-78
Identity = 132/136 (97.06%), Postives = 133/136 (97.79%), Query Frame = 1 
Query:   31 DVAERTIESTSSACRYSLEEALEQPAGSLSAACEAEVGRILDAKAHHKAGAGKPRRGGDKSSTDAPTTSSRTGSKNEQTEDHGTQAATVVLTFVSLVLVAVIALAYCASVGRPKRGGRRLHKKKQERIRERGKKRR 438
            DVAERTIESTSSACRY LEEALEQPAGSLSAACEAEVGRILDAKAHHKAGAGKPRRGGDKS TDAPT SSRTGSKNEQTEDHGTQAATVVLTFVSLVLVAV+ALAYCASVGRPKRGGRRLHKKKQERIRERGKKRR
Sbjct:    5 DVAERTIESTSSACRYRLEEALEQPAGSLSAACEAEVGRILDAKAHHKAGAGKPRRGGDKSGTDAPTKSSRTGSKNEQTEDHGTQAATVVLTFVSLVLVAVVALAYCASVGRPKRGGRRLHKKKQERIRERGKKRR 140
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10118.158.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized3.880e-7897.06protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10118contigEcto-sp9_F_contig10118:2716..4452 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_003510.1
Exons4
Model size441
Cds size441
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10118.158.1prot_Ecto-sp9_F_contig10118.158.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10118 2716..4452 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928206.267308-CDS-Ecto-sp9_F_contig10118:2715..27571622928206.267308-CDS-Ecto-sp9_F_contig10118:2715..2757Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10118 2716..2757 -
1692277794.6581557-CDS-Ecto-sp9_F_contig10118:2715..27571692277794.6581557-CDS-Ecto-sp9_F_contig10118:2715..2757Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10118 2716..2757 -
1622928206.2805657-CDS-Ecto-sp9_F_contig10118:3034..30891622928206.2805657-CDS-Ecto-sp9_F_contig10118:3034..3089Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10118 3035..3089 -
1692277794.6655052-CDS-Ecto-sp9_F_contig10118:3034..30891692277794.6655052-CDS-Ecto-sp9_F_contig10118:3034..3089Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10118 3035..3089 -
1622928206.2906742-CDS-Ecto-sp9_F_contig10118:3486..36531622928206.2906742-CDS-Ecto-sp9_F_contig10118:3486..3653Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10118 3487..3653 -
1692277794.6736932-CDS-Ecto-sp9_F_contig10118:3486..36531692277794.6736932-CDS-Ecto-sp9_F_contig10118:3486..3653Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10118 3487..3653 -
1622928206.3031628-CDS-Ecto-sp9_F_contig10118:4275..44521622928206.3031628-CDS-Ecto-sp9_F_contig10118:4275..4452Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10118 4276..4452 -
1692277794.6832235-CDS-Ecto-sp9_F_contig10118:4275..44521692277794.6832235-CDS-Ecto-sp9_F_contig10118:4275..4452Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10118 4276..4452 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10118.158.1

>prot_Ecto-sp9_F_contig10118.158.1 ID=prot_Ecto-sp9_F_contig10118.158.1|Name=mRNA_Ecto-sp9_F_contig10118.158.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=147bp
MVYVVLAETRDVAERTIESTSSACRYSLEEALEQPAGSLSAACEAEVGRI
LDAKAHHKAGAGKPRRGGDKSSTDAPTTSSRTGSKNEQTEDHGTQAATVV
LTFVSLVLVAVIALAYCASVGRPKRGGRRLHKKKQERIRERGKKRR*
back to top

mRNA from alignment at Ecto-sp9_F_contig10118:2716..4452-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10118.158.1 ID=mRNA_Ecto-sp9_F_contig10118.158.1|Name=mRNA_Ecto-sp9_F_contig10118.158.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1737bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10118:2716..4452- (Ectocarpus species9 EcSCA_722f female)
ATGGTTTATGTTGTCCTTGCGGAAACCAGGGATGTGGCGGAGAGGACTAT
CGAATCGACGTCCAGCGCTTGTCGCTATAGCCTTGAGGAAGCGCTGGAGC
AGCCTGCGGGAAGCCTGAGTGCGGCTTGTGAAGCCGAAGTAGGCAGAATT
TTGGACGCCAAGGCTCACCATAAGGCGGTGAGAATCGTGTCAAGTTATGT
AGGCCACCGTTTTTTTTTGTTTCGCCAAAACCGGTATCAACATAAACATG
ATCGCATCGTGTCAATTTTCCAATCGTCAAAGTTTCTGAGACAGAGTTTC
TCGAACAACGTGCAATGAAAGTGCACAATAAAAGTAGATATTGCATCGTT
TTTTATGTCCAGAGGTGCAATAAAATGATCCGAAGCTGACACAAGAACCT
GCCTCCAAACGGCGAAGGGTTCGGTGAACATACCTCGGTTAACACCCAAA
ACTCAATGGCAAGGCGGCGCCCACCGAGTTGGCCTGGTGTAAGTCTTGTA
GCTACGTGTGAGACCACAAGCCTTCGGTCTTGCATTTAAGGTCTATGTGT
CGTGCATCCCACTCCCATGGACAGAAACAACCGATGGTGGATCATTCGTA
AATCGACAATCGTTGTTGAACAAAACTAATCCACCCCCGCGGTACCCCAG
CAGACCTTCCTAATGGCACCGGATGTACACCGCGTCTTGTTGAACGATTC
TCCGTCCGTTGGTCTGCAACGTTCCCTTCCCATTTCCTCCATGCCACGTT
GCTACTGTTGGTGCGTGCGCCCTCTGCGTTGATGCCACTTTTTCGTCAGG
GCGCTGGCAAACCTAGGCGGGGAGGCGACAAAAGTAGCACTGACGCCCCC
ACAACGAGCTCCCGGACAGGTTCGAAGAACGAACAGACGGAAGATCATGG
GACACAGGCCGCGACGGTCGTGCTGACCTTCGTCAGCCTTGTGCTGGTGG
CGGTCATAGCCTTGGCGTGAGTACCACTTTGGACTTTTGGAAGTCGAAAG
ACGCATCTTCGCAGTCCAACGTAGTGTTCCTGTTGTAACTGATACTGGTG
TGCGTTGCTGTTCCGCACTCGGTTGAGGTCACGGTTTCATCCAATAGTTG
TAAAACACCTCACTCAGTCGACGGCAGCGCCTCTTTTGCATCACACTCTT
TCGTTGTTGTGAAATGGCAATGTTATGTCGCACTGAAGCTACAAGTCCTT
CGGTAGGAACTGTGCTGCGAGTGGCGCACCCTTGCATCCTCCCTTACGCT
TGATGGCATGCCCTTGCGGTGGAGTATAGTCTAGTCTACAATCGGTGGAA
ATTGCCTCCTTTCAAATGGTTTTACGAAGCGACAGCGCGTCCGTCCGTCT
TTCGTACGGGCAGATACTGCGCAAGCGTCGGTCGACCGAAACGGGGCGGT
AGGAGGCTGCACAAAAAGGTAAGCTCGCTGCCAATAGGCACCAGTACTGT
TGGAGCTGATAGCCCAAGACCAGCTATATGTCAAGGATGCACTTGCTCGA
TGTCGCTCGTACGGATTGTTGATGCCGAGATGCCGACATTGAAAGCACAC
GCAGCGTTTGTTCATCGACCACTTCAATCGCTCTGAACGTGTTCAAGTAA
AATCAAATGAGCGGTTTTAGCTTCTCACAGGTCTACGGCAGCCAATTTTG
GCTGTTTCCCCTTCCTCGCATCGTTGCCTGTCATCGCTCAAGCAGAAACA
AGAAAGGATCAGGGAGCGGGGTAAGAAACGGCGATAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10118:2716..4452-

>mRNA_Ecto-sp9_F_contig10118.158.1 ID=mRNA_Ecto-sp9_F_contig10118.158.1|Name=mRNA_Ecto-sp9_F_contig10118.158.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=882bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10118:2716..4452- (Ectocarpus species9 EcSCA_722f female)
ATGGTTTATGTTGTCCTTGCGGAAACCAGGGATGTGGCGGAGAGGACTAT
CGAATCGACGTCCAGCGCTTGTCGCTATAGCCTTGAGGAAGCGCTGGAGC
AGCCTGCGGGAAGCCTGAGTGCGGCTTGTGAAGCCGAAGTAGGCAGAATT
TTGGACGCCAAGGCTCACCATAAGGCGATGGTTTATGTTGTCCTTGCGGA
AACCAGGGATGTGGCGGAGAGGACTATCGAATCGACGTCCAGCGCTTGTC
GCTATAGCCTTGAGGAAGCGCTGGAGCAGCCTGCGGGAAGCCTGAGTGCG
GCTTGTGAAGCCGAAGTAGGCAGAATTTTGGACGCCAAGGCTCACCATAA
GGCGGGCGCTGGCAAACCTAGGCGGGGAGGCGACAAAAGTAGCACTGACG
CCCCCACAACGAGCTCCCGGACAGGTTCGAAGAACGAACAGACGGAAGAT
CATGGGACACAGGCCGCGACGGTCGTGCTGACCTTCGTCAGCCTTGTGCT
GGTGGCGGTCATAGCCTTGGCGGCGCTGGCAAACCTAGGCGGGGAGGCGA
CAAAAGTAGCACTGACGCCCCCACAACGAGCTCCCGGACAGGTTCGAAGA
ACGAACAGACGGAAGATCATGGGACACAGGCCGCGACGGTCGTGCTGACC
TTCGTCAGCCTTGTGCTGGTGGCGGTCATAGCCTTGGCATACTGCGCAAG
CGTCGGTCGACCGAAACGGGGCGGTAGGAGGCTGCACAAAAAGATACTGC
GCAAGCGTCGGTCGACCGAAACGGGGCGGTAGGAGGCTGCACAAAAAGAA
ACAAGAAAGGATCAGGGAGCGGGGTAAGAAACGGCGATAGAAACAAGAAA
GGATCAGGGAGCGGGGTAAGAAACGGCGATAG
back to top