prot_Ecto-sp9_F_contig10092.124.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig10092.124.1
Unique Name	prot_Ecto-sp9_F_contig10092.124.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	59

Homology

[Close]

BLAST of mRNA_Ecto-sp9_F_contig10092.124.1 vs.
Match: V-type (ATPase subunit C n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RWF3_9ARCH)

HSP 1 Score: 95.5 bits (236), Expect = 1.950e-24
Identity = 49/58 (84.48%), Postives = 56/58 (96.55%), Query Frame = 0

Query:    1 DIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGASECRK 58
            DIGAAYGTAKSGVGI+SMGVM+PGLVM+NIIPVVMAGVLGIYGLIVAVI+ G+SE ++
Sbjct:   29 DIGAAYGTAKSGVGIASMGVMHPGLVMKNIIPVVMAGVLGIYGLIVAVIIQGSSEYQR 86

[Close]

BLAST of mRNA_Ecto-sp9_F_contig10092.124.1 vs.
Match: V-type (proton ATPase proteolipid subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8S5_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 7.250e-24
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 0

Query:    1 DIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGA 53
            +IGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGA
Sbjct:   24 NIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGA 76

[Close]

BLAST of mRNA_Ecto-sp9_F_contig10092.124.1 vs.
Match: V-type (proton ATPase proteolipid subunit n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RP84_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.780e-23
Identity = 51/59 (86.44%), Postives = 55/59 (93.22%), Query Frame = 0

Query:    1 DIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGASECRKG 59
            +IGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVI+ GA +  +G
Sbjct:   30 NIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIIQGAIKKPEG 88

[Close]

BLAST of mRNA_Ecto-sp9_F_contig10092.124.1 vs.
Match: V-type (proton ATPase proteolipid subunit (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A8U0_TRICV)

HSP 1 Score: 92.8 bits (229), Expect = 7.030e-23
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 0

Query:    1 DIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGA 53
            +IGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVI+ G+
Sbjct:   54 NIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIIQGS 106

[Close]

BLAST of mRNA_Ecto-sp9_F_contig10092.124.1 vs.
Match: V-type (proton ATPase proteolipid subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1C3_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 9.160e-23
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0

Query:    1 DIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGA 53
            +IGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIL G+
Sbjct:   28 NIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQGS 80

[Close]

BLAST of mRNA_Ecto-sp9_F_contig10092.124.1 vs.
Match: V-type (proton ATPase proteolipid subunit n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0YK80_AURAN)

HSP 1 Score: 93.6 bits (231), Expect = 1.010e-22
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0

Query:    1 DIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGA 53
            +IGAAYGTAKSGVGI+SMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIL GA
Sbjct:   30 NIGAAYGTAKSGVGIASMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQGA 82

[Close]

BLAST of mRNA_Ecto-sp9_F_contig10092.124.1 vs.
Match: V-type (proton ATPase proteolipid subunit n=19 Tax=Ochrophyta TaxID=2696291 RepID=B8BTR9_THAPS)

HSP 1 Score: 92.8 bits (229), Expect = 1.750e-22
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 0

Query:    1 DIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGA 53
            +IGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVI+ G+
Sbjct:   24 NIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIIQGS 76

[Close]

BLAST of mRNA_Ecto-sp9_F_contig10092.124.1 vs.
Match: V-type (proton ATPase proteolipid subunit n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WX88_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.840e-22
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = 0

Query:    1 DIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGASECRKG 59
            +IGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVI+ G+    +G
Sbjct:  105 NIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIIQGSITAPQG 163

[Close]

BLAST of mRNA_Ecto-sp9_F_contig10092.124.1 vs.
Match: V-type (proton ATPase proteolipid subunit (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NJQ0_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.980e-22
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 0

Query:    1 DIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGA 53
            +IGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVI+ G+
Sbjct:   59 NIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIIQGS 111

[Close]

BLAST of mRNA_Ecto-sp9_F_contig10092.124.1 vs.
Match: V-type (proton ATPase proteolipid subunit n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LI96_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 5.920e-22
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 0

Query:    1 DIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGA 53
            +IGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVI+ G+
Sbjct:   77 NIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIIQGS 129

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig10092.124.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig10092.124.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
V-type	1.950e-24	84.48	ATPase subunit C n=1 Tax=archaeon TaxID=1906665 Re...	[more]
V-type	7.250e-24	98.11	proton ATPase proteolipid subunit n=1 Tax=Ectocarp...	[more]
V-type	1.780e-23	86.44	proton ATPase proteolipid subunit n=1 Tax=Eucampia...	[more]
V-type	7.030e-23	92.45	proton ATPase proteolipid subunit (Fragment) n=1 T...	[more]
V-type	9.160e-23	94.34	proton ATPase proteolipid subunit n=1 Tax=Tribonem...	[more]
V-type	1.010e-22	94.34	proton ATPase proteolipid subunit n=2 Tax=Pelagomo...	[more]
V-type	1.750e-22	92.45	proton ATPase proteolipid subunit n=19 Tax=Ochroph...	[more]
V-type	1.840e-22	84.75	proton ATPase proteolipid subunit n=2 Tax=Craspedo...	[more]
V-type	1.980e-22	92.45	proton ATPase proteolipid subunit (Fragment) n=1 T...	[more]
V-type	5.920e-22	92.45	proton ATPase proteolipid subunit n=2 Tax=Amphora ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000245	V-ATPase proteolipid subunit	PRINTS	PR00122	VACATPASE	coord: 4..28 score: 72.53 coord: 30..54 score: 66.21
IPR011555	V-ATPase proteolipid subunit C, eukaryotic	TIGRFAM	TIGR01100	TIGR01100	coord: 2..53 e-value: 3.9E-24 score: 82.9
None	No IPR available	GENE3D	1.20.120.610		coord: 1..58 e-value: 3.7E-19 score: 70.7
None	No IPR available	PANTHER	PTHR10263:SF48		coord: 2..55
None	No IPR available	PANTHER	PTHR10263	V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT	coord: 2..55
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 30..53
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..29
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 54..59
None	No IPR available	TMHMM	TMhelix		coord: 30..52
IPR002379	V-ATPase proteolipid subunit C-like domain	PFAM	PF00137	ATP-synt_C	coord: 2..50 e-value: 8.5E-11 score: 42.0
IPR035921	F/V-ATP synthase subunit C superfamily	SUPERFAMILY	81333	F1F0 ATP synthase subunit C	coord: 2..51

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig10092	contig	Ecto-sp9_F_contig10092:154..330 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig10092.124.1	mRNA_Ecto-sp9_F_contig10092.124.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig10092 154..330 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig10092.124.1 ID=prot_Ecto-sp9_F_contig10092.124.1|Name=mRNA_Ecto-sp9_F_contig10092.124.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=59bp
DIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIL
SGASECRKG

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000245	ATPase_proteolipid_csu
IPR011555	ATPase_proteolipid_su_C_euk
IPR002379	ATPase_proteolipid_c-like_dom
IPR035921	F/V-ATP_Csub_sf