mRNA_Ecto-sp9_F_contig10092.124.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10092.124.1
Unique NamemRNA_Ecto-sp9_F_contig10092.124.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10092.124.1 vs.
Match: V-type (ATPase subunit C n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RWF3_9ARCH)

HSP 1 Score: 95.5 bits (236), Expect = 1.950e-24
Identity = 49/58 (84.48%), Postives = 56/58 (96.55%), Query Frame = 1 
Query:    1 DIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGASECRK 174
            DIGAAYGTAKSGVGI+SMGVM+PGLVM+NIIPVVMAGVLGIYGLIVAVI+ G+SE ++
Sbjct:   29 DIGAAYGTAKSGVGIASMGVMHPGLVMKNIIPVVMAGVLGIYGLIVAVIIQGSSEYQR 86
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BLAST of mRNA_Ecto-sp9_F_contig10092.124.1 vs.
Match: V-type (proton ATPase proteolipid subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8S5_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 7.250e-24
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 DIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGA 159
            +IGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGA
Sbjct:   24 NIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGA 76
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BLAST of mRNA_Ecto-sp9_F_contig10092.124.1 vs.
Match: V-type (proton ATPase proteolipid subunit n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RP84_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.780e-23
Identity = 51/59 (86.44%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 DIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGASECRKG 177
            +IGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVI+ GA +  +G
Sbjct:   30 NIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIIQGAIKKPEG 88
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BLAST of mRNA_Ecto-sp9_F_contig10092.124.1 vs.
Match: V-type (proton ATPase proteolipid subunit (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A8U0_TRICV)

HSP 1 Score: 92.8 bits (229), Expect = 7.030e-23
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:    1 DIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGA 159
            +IGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVI+ G+
Sbjct:   54 NIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIIQGS 106
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BLAST of mRNA_Ecto-sp9_F_contig10092.124.1 vs.
Match: V-type (proton ATPase proteolipid subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1C3_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 9.160e-23
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:    1 DIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGA 159
            +IGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIL G+
Sbjct:   28 NIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQGS 80
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BLAST of mRNA_Ecto-sp9_F_contig10092.124.1 vs.
Match: V-type (proton ATPase proteolipid subunit n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0YK80_AURAN)

HSP 1 Score: 93.6 bits (231), Expect = 1.010e-22
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:    1 DIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGA 159
            +IGAAYGTAKSGVGI+SMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIL GA
Sbjct:   30 NIGAAYGTAKSGVGIASMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQGA 82
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BLAST of mRNA_Ecto-sp9_F_contig10092.124.1 vs.
Match: V-type (proton ATPase proteolipid subunit n=19 Tax=Ochrophyta TaxID=2696291 RepID=B8BTR9_THAPS)

HSP 1 Score: 92.8 bits (229), Expect = 1.750e-22
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:    1 DIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGA 159
            +IGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVI+ G+
Sbjct:   24 NIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIIQGS 76
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10092.124.1 vs.
Match: V-type (proton ATPase proteolipid subunit n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WX88_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.840e-22
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:    1 DIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGASECRKG 177
            +IGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVI+ G+    +G
Sbjct:  105 NIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIIQGSITAPQG 163
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BLAST of mRNA_Ecto-sp9_F_contig10092.124.1 vs.
Match: V-type (proton ATPase proteolipid subunit (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NJQ0_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.980e-22
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:    1 DIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGA 159
            +IGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVI+ G+
Sbjct:   59 NIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIIQGS 111
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BLAST of mRNA_Ecto-sp9_F_contig10092.124.1 vs.
Match: V-type (proton ATPase proteolipid subunit n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LI96_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 5.920e-22
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:    1 DIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGA 159
            +IGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVI+ G+
Sbjct:   77 NIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIIQGS 129
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10092.124.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
V-type1.950e-2484.48ATPase subunit C n=1 Tax=archaeon TaxID=1906665 Re... [more]
V-type7.250e-2498.11proton ATPase proteolipid subunit n=1 Tax=Ectocarp... [more]
V-type1.780e-2386.44proton ATPase proteolipid subunit n=1 Tax=Eucampia... [more]
V-type7.030e-2392.45proton ATPase proteolipid subunit (Fragment) n=1 T... [more]
V-type9.160e-2394.34proton ATPase proteolipid subunit n=1 Tax=Tribonem... [more]
V-type1.010e-2294.34proton ATPase proteolipid subunit n=2 Tax=Pelagomo... [more]
V-type1.750e-2292.45proton ATPase proteolipid subunit n=19 Tax=Ochroph... [more]
V-type1.840e-2284.75proton ATPase proteolipid subunit n=2 Tax=Craspedo... [more]
V-type1.980e-2292.45proton ATPase proteolipid subunit (Fragment) n=1 T... [more]
V-type5.920e-2292.45proton ATPase proteolipid subunit n=2 Tax=Amphora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10092contigEcto-sp9_F_contig10092:154..330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue5.1e-18
Seed eggNOG ortholog2880.D7G8S5
Preferred nameATP6V0C
KEGG koko:K02155,ko:K04345,ko:K15542
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko01522,ko03015,ko04010,ko04014,ko04020,ko04024,ko04062,ko04113,ko04114,ko04138,ko04140,ko04142,ko04145,ko04211,ko04213,ko04261,ko04270,ko04310,ko04340,ko04341,ko04371,ko04530,ko04540,ko04611,ko04713,ko04714,ko04720,ko04721,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04740,ko04742,ko04750,ko04910,ko04911,ko04912,ko04913,ko04914,ko04915,ko04916,ko04918,ko04919,ko04921,ko04922,ko04923,ko04924,ko04925,ko04926,ko04927,ko04934,ko04961,ko04962,ko04966,ko04970,ko04971,ko04976,ko05012,ko05020,ko05030,ko05031,ko05032,ko05110,ko05120,ko05146,ko05152,ko05165,ko05166,ko05169,ko05200,ko05203,ko05205,ko05323,ko05414,map00190,map01100,map01522,map03015,map04010,map04014,map04020,map04024,map04062,map04113,map04114,map04138,map04140,map04142,map04145,map04211,map04213,map04261,map04270,map04310,map04340,map04341,map04371,map04530,map04540,map04611,map04713,map04714,map04720,map04721,map04723,map04724,map04725,map04726,map04727,map04728,map04740,map04742,map04750,map04910,map04911,map04912,map04913,map04914,map04915,map04916,map04918,map04919,map04921,map04922,map04923,map04924,map04925,map04926,map04927,map04934,map04961,map04962,map04966,map04970,map04971,map04976,map05012,map05020,map05030,map05031,map05032,map05110,map05120,map05146,map05152,map05165,map05166,map05169,map05200,map05203,map05205,map05323,map05414
KEGG ModuleM00160,M00695
GOsGO:0000003,GO:0000041,GO:0000220,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000331,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005766,GO:0005768,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0006403,GO:0006605,GO:0006623,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006826,GO:0006873,GO:0006875,GO:0006878,GO:0006879,GO:0006885,GO:0006886,GO:0006887,GO:0006897,GO:0006955,GO:0006996,GO:0007033,GO:0007034,GO:0007035,GO:0007040,GO:0007042,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007276,GO:0007292,GO:0008104,GO:0008150,GO:0008286,GO:0008324,GO:0008553,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009894,GO:0009966,GO:0009967,GO:0009987,GO:0010008,GO:0010033,GO:0010243,GO:0010506,GO:0010646,GO:0010647,GO:0010939,GO:0010940,GO:0010941,GO:0010942,GO:0012505,GO:0012506,GO:0015031,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0015682,GO:0015833,GO:0015931,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0016241,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019725,GO:0019829,GO:0019899,GO:0019953,GO:0019954,GO:0022414,GO:0022603,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0023051,GO:0023052,GO:0023056,GO:0030001,GO:0030003,GO:0030004,GO:0030111,GO:0030139,GO:0030141,GO:0030177,GO:0030587,GO:0030641,GO:0030659,GO:0030666,GO:0030667,GO:0030670,GO:0030728,GO:0031090,GO:0031164,GO:0031224,GO:0031323,GO:0031329,GO:0031410,GO:0031625,GO:0031982,GO:0032501,GO:0032502,GO:0032504,GO:0032868,GO:0032869,GO:0032870,GO:0032940,GO:0032991,GO:0033036,GO:0033176,GO:0033177,GO:0033179,GO:0033181,GO:0033227,GO:0033365,GO:0033572,GO:0034220,GO:0034613,GO:0035577,GO:0035751,GO:0036230,GO:0036442,GO:0042119,GO:0042221,GO:0042582,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0042886,GO:0043067,GO:0043068,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0043434,GO:0043492,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0044769,GO:0045055,GO:0045169,GO:0045184,GO:0045321,GO:0045335,GO:0045851,GO:0046903,GO:0046907,GO:0046916,GO:0046933,GO:0046961,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048609,GO:0048856,GO:0048878,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0051236,GO:0051452,GO:0051453,GO:0051641,GO:0051649,GO:0051703,GO:0051704,GO:0051716,GO:0055065,GO:0055067,GO:0055070,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0060142,GO:0065007,GO:0065008,GO:0070727,GO:0070820,GO:0070821,GO:0070838,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072511,GO:0072512,GO:0072594,GO:0072665,GO:0072666,GO:0080171,GO:0090662,GO:0090702,GO:0097708,GO:0098588,GO:0098655,GO:0098657,GO:0098660,GO:0098662,GO:0098771,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099120,GO:0099131,GO:0099132,GO:0099503,GO:0101002,GO:0101003,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902600
EggNOG free text desc.ATP hydrolysis coupled proton transport
EggNOG OGsCOG0636@1,KOG0232@2759
EC2.7.11.11
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03019,ko03036
Hectar predicted targeting categorysignal anchor
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928200.506735-CDS-Ecto-sp9_F_contig10092:153..3301622928200.506735-CDS-Ecto-sp9_F_contig10092:153..330Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10092 154..330 -
1692277793.100681-CDS-Ecto-sp9_F_contig10092:153..3301692277793.100681-CDS-Ecto-sp9_F_contig10092:153..330Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10092 154..330 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10092.124.1prot_Ecto-sp9_F_contig10092.124.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10092 154..330 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10092.124.1

>prot_Ecto-sp9_F_contig10092.124.1 ID=prot_Ecto-sp9_F_contig10092.124.1|Name=mRNA_Ecto-sp9_F_contig10092.124.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=59bp
DIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIL
SGASECRKG
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mRNA from alignment at Ecto-sp9_F_contig10092:154..330-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10092.124.1 ID=mRNA_Ecto-sp9_F_contig10092.124.1|Name=mRNA_Ecto-sp9_F_contig10092.124.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=177bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10092:154..330- (Ectocarpus species9 EcSCA_722f female)
GACATCGGCGCCGCTTACGGAACCGCCAAGTCCGGCGTGGGTATCTCCTC
GATGGGTGTGATGAACCCCGGACTTGTCATGCGTAACATCATCCCCGTGG
TTATGGCTGGTGTCCTGGGCATCTACGGTCTTATCGTGGCGGTTATCCTC
TCGGGAGCAAGTGAGTGTAGGAAGGGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10092:154..330-

>mRNA_Ecto-sp9_F_contig10092.124.1 ID=mRNA_Ecto-sp9_F_contig10092.124.1|Name=mRNA_Ecto-sp9_F_contig10092.124.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10092:154..330- (Ectocarpus species9 EcSCA_722f female)
GACATCGGCGCCGCTTACGGAACCGCCAAGTCCGGCGTGGGTATCTCCTC
GATGGGTGTGATGAACCCCGGACTTGTCATGCGTAACATCATCCCCGTGG
TTATGGCTGGTGTCCTGGGCATCTACGGTCTTATCGTGGCGGTTATCCTC
TCGGGAGCAAGTGAGTGTAGGAAGGGAGACATCGGCGCCGCTTACGGAAC
CGCCAAGTCCGGCGTGGGTATCTCCTCGATGGGTGTGATGAACCCCGGAC
TTGTCATGCGTAACATCATCCCCGTGGTTATGGCTGGTGTCCTGGGCATC
TACGGTCTTATCGTGGCGGTTATCCTCTCGGGAGCAAGTGAGTGTAGGAA
GGGA
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