prot_Ecto-sp9_F_contig1004.87.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig1004.87.1
Unique Nameprot_Ecto-sp9_F_contig1004.87.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length183
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1004.87.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K3_ECTSI)

HSP 1 Score: 323 bits (828), Expect = 7.080e-111
Identity = 162/182 (89.01%), Postives = 166/182 (91.21%), Query Frame = 0 
Query:    1 MDDITKTPCKSMPMPMKAVTTVQDSPPCCCXXXXXXXPAGIEGDMKAAHGASIAILAIHAIALLIGCYVWGGWTTVLIINLDANLTGVFASIFVLCAPSKLVYVSCAILYGVTGLLDMVLVATWFNCEYIDANAGILTLLAMPNIIASFSCFLGCAWALKVFHNRDRDSDPRLPEASDLFLA 182
            MDDITKTP K MPMPMKAVTTVQDSPPCCC       PA +EGD+KAAHGASIAILAIHAIALLIGCYVWG WTTVLIINLDANLTGVF SIFVL APSK VYVSCAILYGVTGLLDM+LVA WFN EYIDANAGILTLLAMPNIIASFSCFLGCAWALKVFHNRDRDSDPRLPEASDLFL+
Sbjct:    1 MDDITKTPYKIMPMPMKAVTTVQDSPPCCCARPCFGPPARMEGDIKAAHGASIAILAIHAIALLIGCYVWGDWTTVLIINLDANLTGVFTSIFVLWAPSKFVYVSCAILYGVTGLLDMILVAAWFNYEYIDANAGILTLLAMPNIIASFSCFLGCAWALKVFHNRDRDSDPRLPEASDLFLS 182
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1004.87.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized7.080e-11189.01protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..52
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 102..125
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 137..159
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 72..76
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 77..95
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 53..71
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 160..182
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 126..136
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 96..101
NoneNo IPR availableTMHMMTMhelixcoord: 50..72
NoneNo IPR availableTMHMMTMhelixcoord: 135..157
NoneNo IPR availableTMHMMTMhelixcoord: 103..125
NoneNo IPR availableTMHMMTMhelixcoord: 76..98

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1004contigEcto-sp9_F_contig1004:8519..10871 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1004.87.1mRNA_Ecto-sp9_F_contig1004.87.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig1004 7968..11960 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig1004.87.1 ID=prot_Ecto-sp9_F_contig1004.87.1|Name=mRNA_Ecto-sp9_F_contig1004.87.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=183bp
MDDITKTPCKSMPMPMKAVTTVQDSPPCCCAPPCCCPPAGIEGDMKAAHG
ASIAILAIHAIALLIGCYVWGGWTTVLIINLDANLTGVFASIFVLCAPSK
LVYVSCAILYGVTGLLDMVLVATWFNCEYIDANAGILTLLAMPNIIASFS
CFLGCAWALKVFHNRDRDSDPRLPEASDLFLA*
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