mRNA_Ecto-sp9_F_contig1004.87.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1004.87.1
Unique NamemRNA_Ecto-sp9_F_contig1004.87.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1004.87.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K3_ECTSI)

HSP 1 Score: 323 bits (828), Expect = 6.380e-107
Identity = 162/182 (89.01%), Postives = 166/182 (91.21%), Query Frame = 3 
Query:  210 MDDITKTPCKSMPMPMKAVTTVQDSPPCCCXXXXXXXPAGIEGDMKAAHGASIAILAIHAIALLIGCYVWGGWTTVLIINLDANLTGVFASIFVLCAPSKLVYVSCAILYGVTGLLDMVLVATWFNCEYIDANAGILTLLAMPNIIASFSCFLGCAWALKVFHNRDRDSDPRLPEASDLFLA 755
            MDDITKTP K MPMPMKAVTTVQDSPPCCC       PA +EGD+KAAHGASIAILAIHAIALLIGCYVWG WTTVLIINLDANLTGVF SIFVL APSK VYVSCAILYGVTGLLDM+LVA WFN EYIDANAGILTLLAMPNIIASFSCFLGCAWALKVFHNRDRDSDPRLPEASDLFL+
Sbjct:    1 MDDITKTPYKIMPMPMKAVTTVQDSPPCCCARPCFGPPARMEGDIKAAHGASIAILAIHAIALLIGCYVWGDWTTVLIINLDANLTGVFTSIFVLWAPSKFVYVSCAILYGVTGLLDMILVAAWFNYEYIDANAGILTLLAMPNIIASFSCFLGCAWALKVFHNRDRDSDPRLPEASDLFLS 182
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1004.87.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized6.380e-10789.01protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1004contigEcto-sp9_F_contig1004:7968..11960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons6
Model size1294
Cds size549
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1004.87.1prot_Ecto-sp9_F_contig1004.87.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1004 8519..10871 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928196.3607569-UTR-Ecto-sp9_F_contig1004:7967..81381622928196.3607569-UTR-Ecto-sp9_F_contig1004:7967..8138Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1004 7968..8138 +
1692277790.3267994-UTR-Ecto-sp9_F_contig1004:7967..81381692277790.3267994-UTR-Ecto-sp9_F_contig1004:7967..8138Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1004 7968..8138 +
1622928196.377416-UTR-Ecto-sp9_F_contig1004:8480..85181622928196.377416-UTR-Ecto-sp9_F_contig1004:8480..8518Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1004 8481..8518 +
1692277790.3361962-UTR-Ecto-sp9_F_contig1004:8480..85181692277790.3361962-UTR-Ecto-sp9_F_contig1004:8480..8518Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1004 8481..8518 +
1622928196.4787009-UTR-Ecto-sp9_F_contig1004:10871..108811622928196.4787009-UTR-Ecto-sp9_F_contig1004:10871..10881Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1004 10872..10881 +
1692277790.4016273-UTR-Ecto-sp9_F_contig1004:10871..108811692277790.4016273-UTR-Ecto-sp9_F_contig1004:10871..10881Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1004 10872..10881 +
1622928196.490142-UTR-Ecto-sp9_F_contig1004:11434..119601622928196.490142-UTR-Ecto-sp9_F_contig1004:11434..11960Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1004 11435..11960 +
1692277790.4130516-UTR-Ecto-sp9_F_contig1004:11434..119601692277790.4130516-UTR-Ecto-sp9_F_contig1004:11434..11960Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1004 11435..11960 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928196.3894384-CDS-Ecto-sp9_F_contig1004:8518..86591622928196.3894384-CDS-Ecto-sp9_F_contig1004:8518..8659Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1004 8519..8659 +
1692277790.3463032-CDS-Ecto-sp9_F_contig1004:8518..86591692277790.3463032-CDS-Ecto-sp9_F_contig1004:8518..8659Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1004 8519..8659 +
1622928196.415735-CDS-Ecto-sp9_F_contig1004:9435..95051622928196.415735-CDS-Ecto-sp9_F_contig1004:9435..9505Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1004 9436..9505 +
1692277790.3667417-CDS-Ecto-sp9_F_contig1004:9435..95051692277790.3667417-CDS-Ecto-sp9_F_contig1004:9435..9505Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1004 9436..9505 +
1622928196.453035-CDS-Ecto-sp9_F_contig1004:10257..104171622928196.453035-CDS-Ecto-sp9_F_contig1004:10257..10417Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1004 10258..10417 +
1692277790.382345-CDS-Ecto-sp9_F_contig1004:10257..104171692277790.382345-CDS-Ecto-sp9_F_contig1004:10257..10417Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1004 10258..10417 +
1622928196.468195-CDS-Ecto-sp9_F_contig1004:10693..108711622928196.468195-CDS-Ecto-sp9_F_contig1004:10693..10871Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1004 10694..10871 +
1692277790.392417-CDS-Ecto-sp9_F_contig1004:10693..108711692277790.392417-CDS-Ecto-sp9_F_contig1004:10693..10871Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1004 10694..10871 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1004.87.1

>prot_Ecto-sp9_F_contig1004.87.1 ID=prot_Ecto-sp9_F_contig1004.87.1|Name=mRNA_Ecto-sp9_F_contig1004.87.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=183bp
MDDITKTPCKSMPMPMKAVTTVQDSPPCCCAPPCCCPPAGIEGDMKAAHG
ASIAILAIHAIALLIGCYVWGGWTTVLIINLDANLTGVFASIFVLCAPSK
LVYVSCAILYGVTGLLDMVLVATWFNCEYIDANAGILTLLAMPNIIASFS
CFLGCAWALKVFHNRDRDSDPRLPEASDLFLA*
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mRNA from alignment at Ecto-sp9_F_contig1004:7968..11960+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1004.87.1 ID=mRNA_Ecto-sp9_F_contig1004.87.1|Name=mRNA_Ecto-sp9_F_contig1004.87.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3993bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1004:7968..11960+ (Ectocarpus species9 EcSCA_722f female)
CGAGCGCAGCAGCTGGATGAGTCGTAGGGGAGAAGCGGCTGCTCCTCGAA
AATGATCATTGCCGCTTCGGGACTCATCGGGGAAGGCCTCCGTTGTTGGA
ATATTACCATGCAGTGCCCGGGGGATCGAGAGTACGGCGGGCTGCCCCTC
AGCAGGATACGAACTACGAATGTGGGATAATCGACAGCAGTGTTGCCGCC
GTTCGTCCCCGGAAATACATCGAGAGTTTACCCAGTTTCTCCCGGATCCC
ATTACTGTAGTCGAGCGACGAGCATGCATTGCCAACACGCCGACAGAGCA
GAAATATACTTGAGTTTTTACAGGAGATTGGATCGGCACATAAAACCCGT
GATGGGGAGTAGAGTTTTCCGGGAAATTTTCTGGGGACAGGGTTTTCTTA
CAGGGTCCGGTGCTAGAGCACAATTTGCCGTCGCGAAGCGCGCACACGTC
GTTGCCCCTCCACACCTCCATACACACCTCCATAACTTCTTCTCCTACAT
TTTCAATCTACAGATCTTGTTCGTGTGCACCACTGCTGAGCTTTGGCCGG
TATGGACGACATCACGAAGACGCCGTGTAAGAGCATGCCCATGCCCATGA
AGGCTGTGACCACCGTACAGGACTCCCCGCCGTGTTGCTGCGCCCCCCCG
TGCTGCTGCCCCCCGGCGGGGATCGAGGGGGATATGAAAGCGGTGAGAGA
TCACGGGTACGTCATGTAACGCACGCATGTGATATGTAGGGTGCGGTTTC
AAGTAGCTGTTGCTGCGCGCGTATCCTGTTATGTTGTACACGCGCGTACA
TGGTTCGTTGCATCTCTCCTGATGATCCAACCGCTACAGTATATCGTGAT
TGGTGTGTACCGCCCACAGCGAGCTGAACCCTCTTCCTCTGAGTTCTGCA
GGGCAGACGTACTTATTATGGAGTTACAGTATTGCTGCTCCTTTTTGACA
AGACCGATGTCTACAGAGTACCGTAGCGCCGACACCAGCGAACTGCCCTT
GACGCCAGCGTTCCAACACGTAATAGCAGTTACGTGTAGCATTCATACCT
GTTGCATTCCGTAGACACGTGTTGAACACTCTCTGTTGTAGTCTAACCAA
TATTTGCATAGAAATGTTCAGCCGTTGAGTAGCGGGGTGAATGCCCTCGG
GTCGATGCGCGTATATGAATTTGCGATGAGGCAATCTTGTATGCATACGG
TATAAGTTATGCCGGAGCGAATCATCGCGGGGCGTTCGTTCATGCTGTGG
TCTGCGCACTAAATTTCTCGATGGCGCTCGCTCGTCGTTTCCACAATACT
TGGACAAACATGTGTTCTACAATATTCATCTATAGCAATTAGAGCAACTC
AAAGTCGACACACAGACTCCCCGCAACCACTACAGTATATAGGACCACCA
CCGCAAACAACAACACGCCAACTCTAACGCCACCGCCGACACGCCAATAA
TATTCCACCCCCTCGCAGGCGCACGGGGCATCGATCGCCATCCTCGCCAT
CCACGCCATCGCTCTGCTTATCGGCTGCTACGTATGGGGTCAGTGCTGAC
GCTTCATGCAGTACATATGTATTTGGGTGTGTAGTATCACAGCCAGCTAC
AGGCGGACGTTGTGGAATGGGCTGGGCTGCCACGCTTGGCATATTTGCTT
ATCGCTAGTTTCATCGAGGCGGATATTCGATATGTTGTGAATGAGCCCGT
CACGTCGTTGTCCATAGGATGCATCCATCCGCAGTCAGTACAAACCGGTG
CATATACATTGGAGAGGTGTTGTCAATCCCACGAAACCGAGGCATGGCGT
AAGCAATGTACTCAAGTAGAAGTATGAAAGATTGGCATCGGTGCCCACGT
GAGGTGCTGGCAGATACCTCATCGTGGTAAATATTCATCAGCACAACAAG
AAGTGCCAAAACGTGCTTAGACTTTGCTCTACACGTAACGTGGGTAGCAA
GAGGTGTTCGGCGAAGTAGTTTGTAGCAGGGCCACATCCGCCGGCGATAT
CCCTGTTCATCCAATGCATGAGCAGTGCGAACCTGCAATTCACCCGCCGA
CCAGATATCTTGTTTTGTTTAGGCTTTAAGACTACTGTTCGGTGGCCTCT
TCTCTTCCGCCAAGAACGCACCATCAGTGGGTTACTTTGTTATTTTCGCC
GGGCTTGAATGTTCGGTAAGACTTCGCACCATACGGTGGCCTAATCTTCA
CAACCGATTCACCAACTCACCCTCCAAGCTCCACATGGTGTCTTACAACG
ATCCGCCCGCGCTTTTTCGTCCCGCTGCCCCTCTTGACAGGAGGTTGGAC
CACGGTGCTGATAATCAACTTGGACGCCAATCTCACTGGGGTTTTCGCGA
GCATCTTTGTGCTGTGCGCCCCCTCAAAGCTCGTGTACGTTTCCTGTGCT
ATTTTGTACGGCGTGACGGGACTCCTTGACATGGTTCTCGTGGCGACGTG
GTGAGTGGTCCAGTGCCGAGTGCAGGAGCTGTGCGATCTCACATTCTAAG
ACGCGCTTGTGTGGGAGAGCGCGGTAAGTAGTTATCGTGATGTGGGTCCT
CCCTTCGCTTGGCACCACTAACTCTGCTGCCGTTGTTGATTATCTCTTCC
GACTTTGGTATCCTAGGGACTTCTGTGTGCCTGGCGTGCGTTCATCCATG
CAATCGGAACGACAACACCTGCACCCAAAACCCTTCTCCCCCGTTCGCCG
CACATACCGAACGTTTTCATGAGCAGGTTCAACTGCGAGTATATCGATGC
TAACGCCGGAATTTTAACCCTGCTGGCTATGCCAAATATCATCGCGAGCT
TTTCCTGCTTCCTCGGATGCGCATGGGCGTTGAAGGTTTTCCACAACCGC
GACAGGGATAGCGACCCGCGTTTGCCCGAGGCTTCAGACCTCTTTTTGGC
ATGACCTCACACATGTATGTGCGGATGTAACTGAGTCTTGGGCGTCTCTG
GGTCGTCTTCCTGTATGTTTCGTTGGTAGATGTCTCCCTCTTCGTCTCAT
CCAGATGGACATAACGCAATGTCCTCTTCACCCCCCTCCCCCCCAATCGC
CGAAACAGCTGTAAATTCGTTAATTTATCCCCGGGGTTTTATCTTAGCAG
TCAACAAAGAAAATGTCCTCCTTGCCTCTTGATTTCCCTTGGGAGATTTT
CTGGCGGCATAATGTACGTAGTTCTGGGTTTGCCGGCCCATTTCTTTTGC
GTTCACCGGAGGAATTCTGGCGTTTAGCTGCGCTAAAGGATTCGTGGCTT
GGACCCTCAACTTTGAGCTTGGCCTGGAATAGGTTGCATTGAGCGGCTGG
TGTTTGGAGCGGTTTCGATCGCACACTACACGCTACGGCTCACCGCCCAC
TCCGGCGTCCACCCAGCTCGATTTATTACCTACATTGAAGCACCTTTTTT
TCTCGAGAAAGCCGCTCACCCTTTCCGTTGCGTTGCCGTTGCACGTGCTG
CCGCTCTTGTCTCGCAGAGCAGATCATCTGAGCTCCCCTGTCTCCGCTGC
AGCCCATCATCATATCTTCCACTAAGACGATAATGATGATTCTACCGTCT
TGGAATTCGGAATGGTGCCAACAACCTTTGGGCTCGTTGTAGAAAATAGG
GAAATAGCAGGAAAATAGAAGCGCGAGGCCTGTGCCTCTGTGCCGAGCGG
TTTATGTACATACGCATAGTCGACGGCTTACAAAGTCGTGAGGCAGCGCC
CAGGATCTGTTGTGCCGTCCCCGCCGCTATAGCTCGAGTGTTTATTTTCG
ATGTATGTCCCGTGGAGTATACAGGGGGCTGTTAGCTAATATAGCAAAAT
GTGACGGAGGAGTACAGGGCTCGAACCTACCGGATTGTATTCTATAGATT
GCGGGAGAACGTAGAACGATAGCTTCTACTTCCTTCATAGTTGATTCCCT
CGTCTTATCTTGGTGTGATGGAGATCGTTTCGATGGACTGCCGGATGAAT
GTGGCGATAACGTGGTAGGGCGTGGTGCTCTTACCACACTTAT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1004:7968..11960+

>mRNA_Ecto-sp9_F_contig1004.87.1 ID=mRNA_Ecto-sp9_F_contig1004.87.1|Name=mRNA_Ecto-sp9_F_contig1004.87.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1098bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1004:7968..11960+ (Ectocarpus species9 EcSCA_722f female)
ATGGACGACATCACGAAGACGCCGTGTAAGAGCATGCCCATGCCCATGAA
GGCTGTGACCACCGTACAGGACTCCCCGCCGTGTTGCTGCGCCCCCCCGT
GCTGCTGCCCCCCGGCGGGGATCGAGGGGGATATGAAAGCGATGGACGAC
ATCACGAAGACGCCGTGTAAGAGCATGCCCATGCCCATGAAGGCTGTGAC
CACCGTACAGGACTCCCCGCCGTGTTGCTGCGCCCCCCCGTGCTGCTGCC
CCCCGGCGGGGATCGAGGGGGATATGAAAGCGGCGCACGGGGCATCGATC
GCCATCCTCGCCATCCACGCCATCGCTCTGCTTATCGGCTGCTACGTATG
GGGCGCACGGGGCATCGATCGCCATCCTCGCCATCCACGCCATCGCTCTG
CTTATCGGCTGCTACGTATGGGGAGGTTGGACCACGGTGCTGATAATCAA
CTTGGACGCCAATCTCACTGGGGTTTTCGCGAGCATCTTTGTGCTGTGCG
CCCCCTCAAAGCTCGTGTACGTTTCCTGTGCTATTTTGTACGGCGTGACG
GGACTCCTTGACATGGTTCTCGTGGCGACGTGGAGGTTGGACCACGGTGC
TGATAATCAACTTGGACGCCAATCTCACTGGGGTTTTCGCGAGCATCTTT
GTGCTGTGCGCCCCCTCAAAGCTCGTGTACGTTTCCTGTGCTATTTTGTA
CGGCGTGACGGGACTCCTTGACATGGTTCTCGTGGCGACGTGGTTCAACT
GCGAGTATATCGATGCTAACGCCGGAATTTTAACCCTGCTGGCTATGCCA
AATATCATCGCGAGCTTTTCCTGCTTCCTCGGATGCGCATGGGCGTTGAA
GGTTTTCCACAACCGCGACAGGGATAGCGACCCGCGTTTGCCCGAGGCTT
CAGACCTCTTTTTGGCATGAGTTCAACTGCGAGTATATCGATGCTAACGC
CGGAATTTTAACCCTGCTGGCTATGCCAAATATCATCGCGAGCTTTTCCT
GCTTCCTCGGATGCGCATGGGCGTTGAAGGTTTTCCACAACCGCGACAGG
GATAGCGACCCGCGTTTGCCCGAGGCTTCAGACCTCTTTTTGGCATGA
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