mRNA_Ecto-sp9_F_contig1097.844.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1097.844.1
Unique NamemRNA_Ecto-sp9_F_contig1097.844.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig1097.844.1 vs.
Match: NB-ARC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 3.190e-13
Identity = 35/52 (67.31%), Postives = 39/52 (75.00%), Query Frame = 2
Query:   47 DSFTLSTPFQGKYVQAEPLYRRATVIWEKALGADHPTVATVLNNRAGLLSTQ 202
            D  TL T  QG+Y +AEPLY RAT IWE+ALG +HP VAT LNNRAGLL  Q
Sbjct:  648 DFVTLPTYIQGEYAEAEPLYARATEIWERALGPEHPLVATALNNRAGLLERQ 699          
BLAST of mRNA_Ecto-sp9_F_contig1097.844.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 5.280e-12
Identity = 38/66 (57.58%), Postives = 44/66 (66.67%), Query Frame = 2
Query:   23 ARTLVLKHDSFTLSTPFQGKYVQAEPLYRRATVIWEKALGADHPTVATVLNNRAGLLSTQM*HEQS 220
            A T +L +  FT     QGK+ +AEPLYRRAT IWE ALG +HP +AT LNNRAGLLS    H  S
Sbjct:  722 ALTTLLTYLPFTS----QGKFAEAEPLYRRATEIWETALGPEHPQMATALNNRAGLLSNVPPHSLS 783          
BLAST of mRNA_Ecto-sp9_F_contig1097.844.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN14_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.830e-11
Identity = 31/43 (72.09%), Postives = 35/43 (81.40%), Query Frame = 2
Query:   77 GKYVQAEPLYRRATVIWEKALGADHPTVATVLNNRAGLLSTQM 205
            GK+ +AEPLYRRAT IWE ALG +HP VAT LNNRAGLL  Q+
Sbjct:    2 GKFAEAEPLYRRATEIWETALGPEHPHVATALNNRAGLLIKQV 44          
BLAST of mRNA_Ecto-sp9_F_contig1097.844.1 vs.
Match: Tetratricopeptide (repeat-containing protein (Fragment) n=1 Tax=Cyanobacteria bacterium UBA8553 TaxID=2055771 RepID=A0A3B8JJF2_9CYAN)

HSP 1 Score: 60.1 bits (144), Expect = 3.690e-10
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 2
Query:   74 QGKYVQAEPLYRRATVIWEKALGADHPTVATVLNNRAGL 190
            QG Y QAEPLY+R+  IWEKALG++HP VAT LNN A L
Sbjct:    9 QGNYSQAEPLYQRSLAIWEKALGSEHPNVATSLNNLADL 47          
BLAST of mRNA_Ecto-sp9_F_contig1097.844.1 vs.
Match: NB-ARC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW6_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.370e-9
Identity = 38/87 (43.68%), Postives = 43/87 (49.43%), Query Frame = 2
Query:   35 VLKHDSFTLSTPFQGKYVQAEPLYRRATVIWEKALGADHP---------------------------TVATVLNNRAGLLSTQM*HE 214
            V KHD  TL T FQGKY +AEPLY+R+  I EK  G DHP                           TVAT LNNRA LL +Q+ H 
Sbjct:  491 VSKHDPVTLPTAFQGKYEEAEPLYKRSLAIDEKVYGPDHPXXXXXXXXXXXXXXXXXXXXXXXXXXXTVATALNNRAWLLESQVGHR 577          
BLAST of mRNA_Ecto-sp9_F_contig1097.844.1 vs.
Match: tetratricopeptide (repeat protein n=1 Tax=Nitrosospira sp. NRS527 TaxID=155925 RepID=UPI001AF79F07)

HSP 1 Score: 59.3 bits (142), Expect = 2.640e-9
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 2
Query:   74 QGKYVQAEPLYRRATVIWEKALGADHPTVATVLNNRAGL 190
            QG+Y +AEPLY+R+  IWEK LGADHP VAT LNN A L
Sbjct:    7 QGQYTKAEPLYQRSLKIWEKTLGADHPDVATSLNNLATL 45          
BLAST of mRNA_Ecto-sp9_F_contig1097.844.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR2_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 3.350e-9
Identity = 33/61 (54.10%), Postives = 40/61 (65.57%), Query Frame = 2
Query:   62 STPFQGKYVQAEPLYRRATVIWEKALGADHPTVATVLNNRAGLLSTQM*HEQSFQMLPGGL 244
            S  FQGK  +A+PL+ RA  IWEKA   DHP VA VL+NRAGLLS Q    +  ++L G L
Sbjct:  147 SRTFQGKDTEAQPLFERAIKIWEKAHRHDHPLVANVLHNRAGLLSAQYALPRRIRLLLGFL 207          
BLAST of mRNA_Ecto-sp9_F_contig1097.844.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU99_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 4.830e-9
Identity = 35/73 (47.95%), Postives = 42/73 (57.53%), Query Frame = 2
Query:   11 FLHSARTLVLKHDSFTLSTPFQGKYVQAEPLYRRATVIWEKALGADHPTVATVLNNRAGLLSTQM*HEQSFQM 229
            FL       L H S    T  QGKY +A+  Y R+  I ++  GADHP VAT LNN AGLL TQ+ H  +FQM
Sbjct:  448 FLRVVEQFKLLHPSSRTITVSQGKYSEAKTFYERSLAIDKRVYGADHPQVATTLNNLAGLLETQVGH--TFQM 518          
BLAST of mRNA_Ecto-sp9_F_contig1097.844.1 vs.
Match: tetratricopeptide (repeat protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D29528)

HSP 1 Score: 56.6 bits (135), Expect = 1.500e-8
Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = 2
Query:   74 QGKYVQAEPLYRRATVIWEKALGADHPTVATVLNNRAGL 190
            QGKY +AEPLY+RA  I E  LG DHP+VAT LNN AGL
Sbjct:    4 QGKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLAGL 42          
BLAST of mRNA_Ecto-sp9_F_contig1097.844.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H9_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 3.910e-8
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 2
Query:   74 QGKYVQAEPLYRRATVIWEKALGADHPTVATVLNNRAGLL 193
            QG Y +A+PLY R+  I +K LG DHP VATVLNNRAGLL
Sbjct:  205 QGNYAEAKPLYERSQAIRKKVLGPDHPDVATVLNNRAGLL 244          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1097.844.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
NB-ARC3.190e-1367.31domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized5.280e-1257.58protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.830e-1172.09protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Tetratricopeptide3.690e-1069.23repeat-containing protein (Fragment) n=1 Tax=Cyano... [more]
NB-ARC1.370e-943.68domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
tetratricopeptide2.640e-969.23repeat protein n=1 Tax=Nitrosospira sp. NRS527 Tax... [more]
Uncharacterized3.350e-954.10protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.830e-947.95protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
tetratricopeptide1.500e-869.23repeat protein n=1 Tax=Desulfobacter hydrogenophil... [more]
Uncharacterized3.910e-867.50protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1097contigEcto-sp9_F_contig1097:9528..9831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue4.6e-07
Seed eggNOG ortholog2880.D7FGQ1
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size304
Cds size201
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1097.844.1prot_Ecto-sp9_F_contig1097.844.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1097 9535..9735 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928329.297158-UTR-Ecto-sp9_F_contig1097:9527..95341622928329.297158-UTR-Ecto-sp9_F_contig1097:9527..9534Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1097 9528..9534 +
1692277835.1391828-UTR-Ecto-sp9_F_contig1097:9527..95341692277835.1391828-UTR-Ecto-sp9_F_contig1097:9527..9534Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1097 9528..9534 +
1622928329.3243544-UTR-Ecto-sp9_F_contig1097:9735..98311622928329.3243544-UTR-Ecto-sp9_F_contig1097:9735..9831Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1097 9736..9831 +
1692277835.157214-UTR-Ecto-sp9_F_contig1097:9735..98311692277835.157214-UTR-Ecto-sp9_F_contig1097:9735..9831Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1097 9736..9831 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928329.3100579-CDS-Ecto-sp9_F_contig1097:9534..97351622928329.3100579-CDS-Ecto-sp9_F_contig1097:9534..9735Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1097 9535..9735 +
1692277835.1490593-CDS-Ecto-sp9_F_contig1097:9534..97351692277835.1490593-CDS-Ecto-sp9_F_contig1097:9534..9735Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1097 9535..9735 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1097.844.1

>prot_Ecto-sp9_F_contig1097.844.1 ID=prot_Ecto-sp9_F_contig1097.844.1|Name=mRNA_Ecto-sp9_F_contig1097.844.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=67bp
MFLHSARTLVLKHDSFTLSTPFQGKYVQAEPLYRRATVIWEKALGADHPT
VATVLNNRAGLLSTQM*
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mRNA from alignment at Ecto-sp9_F_contig1097:9528..9831+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1097.844.1 ID=mRNA_Ecto-sp9_F_contig1097.844.1|Name=mRNA_Ecto-sp9_F_contig1097.844.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=304bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1097:9528..9831+ (Ectocarpus species9 EcSCA_722f female)
AAAAACCATGTTCCTCCACAGTGCTAGAACCCTTGTACTTAAACACGACT CTTTCACGCTGTCGACTCCATTCCAGGGGAAGTATGTTCAGGCCGAGCCG CTGTATAGGCGGGCCACCGTGATCTGGGAGAAAGCGCTAGGTGCTGACCA CCCAACAGTTGCCACCGTGCTCAACAACCGGGCGGGGTTGCTGAGTACAC AGATGTGACACGAACAAAGCTTCCAGATGCTACCAGGCGGTCTGTAATTT CCGGATGCTTGTGGATGTTCACTAGTCCAGTCGTTAACATCAACCAAGAT CCTG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1097:9528..9831+

>mRNA_Ecto-sp9_F_contig1097.844.1 ID=mRNA_Ecto-sp9_F_contig1097.844.1|Name=mRNA_Ecto-sp9_F_contig1097.844.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1097:9528..9831+ (Ectocarpus species9 EcSCA_722f female)
ATGTTCCTCCACAGTGCTAGAACCCTTGTACTTAAACACGACTCTTTCAC
GCTGTCGACTCCATTCCAGGGGAAGTATGTTCAGGCCGAGCCGCTGTATA
GGCGGGCCACCGTGATCTGGGAGAAAGCGCTAGGTGCTGACCACCCAACA
GTTGCCACCGTGCTCAACAACCGGGCGGGGTTGCTGAGTACACAGATGTG
AATGTTCCTCCACAGTGCTAGAACCCTTGTACTTAAACACGACTCTTTCA
CGCTGTCGACTCCATTCCAGGGGAAGTATGTTCAGGCCGAGCCGCTGTAT
AGGCGGGCCACCGTGATCTGGGAGAAAGCGCTAGGTGCTGACCACCCAAC
AGTTGCCACCGTGCTCAACAACCGGGCGGGGTTGCTGAGTACACAGATGT
GA
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