mRNA_Ecto-sp9_F_contig1097.844.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1097.844.1 vs.
Match: NB-ARC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 3.190e-13 Identity = 35/52 (67.31%), Postives = 39/52 (75.00%), Query Frame = 2
Query: 47 DSFTLSTPFQGKYVQAEPLYRRATVIWEKALGADHPTVATVLNNRAGLLSTQ 202
D TL T QG+Y +AEPLY RAT IWE+ALG +HP VAT LNNRAGLL Q
Sbjct: 648 DFVTLPTYIQGEYAEAEPLYARATEIWERALGPEHPLVATALNNRAGLLERQ 699
BLAST of mRNA_Ecto-sp9_F_contig1097.844.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE) HSP 1 Score: 70.5 bits (171), Expect = 5.280e-12 Identity = 38/66 (57.58%), Postives = 44/66 (66.67%), Query Frame = 2
Query: 23 ARTLVLKHDSFTLSTPFQGKYVQAEPLYRRATVIWEKALGADHPTVATVLNNRAGLLSTQM*HEQS 220
A T +L + FT QGK+ +AEPLYRRAT IWE ALG +HP +AT LNNRAGLLS H S
Sbjct: 722 ALTTLLTYLPFTS----QGKFAEAEPLYRRATEIWETALGPEHPQMATALNNRAGLLSNVPPHSLS 783
BLAST of mRNA_Ecto-sp9_F_contig1097.844.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN14_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 1.830e-11 Identity = 31/43 (72.09%), Postives = 35/43 (81.40%), Query Frame = 2
Query: 77 GKYVQAEPLYRRATVIWEKALGADHPTVATVLNNRAGLLSTQM 205
GK+ +AEPLYRRAT IWE ALG +HP VAT LNNRAGLL Q+
Sbjct: 2 GKFAEAEPLYRRATEIWETALGPEHPHVATALNNRAGLLIKQV 44
BLAST of mRNA_Ecto-sp9_F_contig1097.844.1 vs.
Match: Tetratricopeptide (repeat-containing protein (Fragment) n=1 Tax=Cyanobacteria bacterium UBA8553 TaxID=2055771 RepID=A0A3B8JJF2_9CYAN) HSP 1 Score: 60.1 bits (144), Expect = 3.690e-10 Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 2
Query: 74 QGKYVQAEPLYRRATVIWEKALGADHPTVATVLNNRAGL 190
QG Y QAEPLY+R+ IWEKALG++HP VAT LNN A L
Sbjct: 9 QGNYSQAEPLYQRSLAIWEKALGSEHPNVATSLNNLADL 47
BLAST of mRNA_Ecto-sp9_F_contig1097.844.1 vs.
Match: NB-ARC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW6_9PHAE) HSP 1 Score: 63.5 bits (153), Expect = 1.370e-9 Identity = 38/87 (43.68%), Postives = 43/87 (49.43%), Query Frame = 2
Query: 35 VLKHDSFTLSTPFQGKYVQAEPLYRRATVIWEKALGADHP---------------------------TVATVLNNRAGLLSTQM*HE 214
V KHD TL T FQGKY +AEPLY+R+ I EK G DHP TVAT LNNRA LL +Q+ H
Sbjct: 491 VSKHDPVTLPTAFQGKYEEAEPLYKRSLAIDEKVYGPDHPXXXXXXXXXXXXXXXXXXXXXXXXXXXTVATALNNRAWLLESQVGHR 577
BLAST of mRNA_Ecto-sp9_F_contig1097.844.1 vs.
Match: tetratricopeptide (repeat protein n=1 Tax=Nitrosospira sp. NRS527 TaxID=155925 RepID=UPI001AF79F07) HSP 1 Score: 59.3 bits (142), Expect = 2.640e-9 Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 2
Query: 74 QGKYVQAEPLYRRATVIWEKALGADHPTVATVLNNRAGL 190
QG+Y +AEPLY+R+ IWEK LGADHP VAT LNN A L
Sbjct: 7 QGQYTKAEPLYQRSLKIWEKTLGADHPDVATSLNNLATL 45
BLAST of mRNA_Ecto-sp9_F_contig1097.844.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR2_9PHAE) HSP 1 Score: 62.4 bits (150), Expect = 3.350e-9 Identity = 33/61 (54.10%), Postives = 40/61 (65.57%), Query Frame = 2
Query: 62 STPFQGKYVQAEPLYRRATVIWEKALGADHPTVATVLNNRAGLLSTQM*HEQSFQMLPGGL 244
S FQGK +A+PL+ RA IWEKA DHP VA VL+NRAGLLS Q + ++L G L
Sbjct: 147 SRTFQGKDTEAQPLFERAIKIWEKAHRHDHPLVANVLHNRAGLLSAQYALPRRIRLLLGFL 207
BLAST of mRNA_Ecto-sp9_F_contig1097.844.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU99_9PHAE) HSP 1 Score: 62.0 bits (149), Expect = 4.830e-9 Identity = 35/73 (47.95%), Postives = 42/73 (57.53%), Query Frame = 2
Query: 11 FLHSARTLVLKHDSFTLSTPFQGKYVQAEPLYRRATVIWEKALGADHPTVATVLNNRAGLLSTQM*HEQSFQM 229
FL L H S T QGKY +A+ Y R+ I ++ GADHP VAT LNN AGLL TQ+ H +FQM
Sbjct: 448 FLRVVEQFKLLHPSSRTITVSQGKYSEAKTFYERSLAIDKRVYGADHPQVATTLNNLAGLLETQVGH--TFQM 518
BLAST of mRNA_Ecto-sp9_F_contig1097.844.1 vs.
Match: tetratricopeptide (repeat protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D29528) HSP 1 Score: 56.6 bits (135), Expect = 1.500e-8 Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = 2
Query: 74 QGKYVQAEPLYRRATVIWEKALGADHPTVATVLNNRAGL 190
QGKY +AEPLY+RA I E LG DHP+VAT LNN AGL
Sbjct: 4 QGKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLAGL 42
BLAST of mRNA_Ecto-sp9_F_contig1097.844.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H9_9PHAE) HSP 1 Score: 58.9 bits (141), Expect = 3.910e-8 Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 2
Query: 74 QGKYVQAEPLYRRATVIWEKALGADHPTVATVLNNRAGLL 193
QG Y +A+PLY R+ I +K LG DHP VATVLNNRAGLL
Sbjct: 205 QGNYAEAKPLYERSQAIRKKVLGPDHPDVATVLNNRAGLL 244 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1097.844.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1097.844.1 >prot_Ecto-sp9_F_contig1097.844.1 ID=prot_Ecto-sp9_F_contig1097.844.1|Name=mRNA_Ecto-sp9_F_contig1097.844.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=67bp MFLHSARTLVLKHDSFTLSTPFQGKYVQAEPLYRRATVIWEKALGADHPTback to top mRNA from alignment at Ecto-sp9_F_contig1097:9528..9831+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1097.844.1 ID=mRNA_Ecto-sp9_F_contig1097.844.1|Name=mRNA_Ecto-sp9_F_contig1097.844.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=304bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1097:9528..9831+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1097:9528..9831+ >mRNA_Ecto-sp9_F_contig1097.844.1 ID=mRNA_Ecto-sp9_F_contig1097.844.1|Name=mRNA_Ecto-sp9_F_contig1097.844.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1097:9528..9831+ (Ectocarpus species9 EcSCA_722f female)back to top |