mRNA_Ecto-sp9_F_contig10830.723.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig10830.723.1 vs.
Match: CBM1 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD35_9PHAE) HSP 1 Score: 236 bits (603), Expect = 8.040e-71 Identity = 119/166 (71.69%), Postives = 123/166 (74.10%), Query Frame = 1
Query: 1 PHFNGERAENGNYMESDEVAQRHGICGDPEQ---------------------------------------GHIEMFLCDAHDLPDGPDSVVTQSCFNEYPLDRAEDDEFNSPIDPLNRGRFILDPPCRASETDQELVPGAFLGAVATARFQLPQGVTCERCVVQMA 381
PHFNGERAENGNY+ESDEVAQRHG+CGDPEQ GH+EMFLCDA DLPDGPDSVVTQSCFNE+PLDRAEDDEFN PIDPLNRGRFILDPPCRASETDQELVPGAF G VATARFQLPQGVTCERCVVQMA
Sbjct: 47 PHFNGERAENGNYIESDEVAQRHGVCGDPEQTAAEGSNKYGQENSKYPVLETYAEGGILEVKIVVSTYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEHPLDRAEDDEFNGPIDPLNRGRFILDPPCRASETDQELVPGAFPGDVATARFQLPQGVTCERCVVQMA 212
BLAST of mRNA_Ecto-sp9_F_contig10830.723.1 vs.
Match: EsV-1-166 (n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD67_ECTSI) HSP 1 Score: 236 bits (603), Expect = 1.680e-70 Identity = 118/166 (71.08%), Postives = 123/166 (74.10%), Query Frame = 1
Query: 1 PHFNGERAENGNYMESDEVAQRHGICGDPEQ---------------------------------------GHIEMFLCDAHDLPDGPDSVVTQSCFNEYPLDRAEDDEFNSPIDPLNRGRFILDPPCRASETDQELVPGAFLGAVATARFQLPQGVTCERCVVQMA 381
PHFNGERA+NGNY+ESDEVAQRHG+CGDPEQ GH+EMFLCDA DLPDGPDSVVTQSCFNEYPLDRAEDDEFN PIDPLNRGRFILDPPCRASETDQEL+PGAF G VATARFQLPQGVTCERCVVQMA
Sbjct: 76 PHFNGERAKNGNYIESDEVAQRHGVCGDPEQTAAEGSNKYGQENSNYPVLETYAEGGILEVKIVVSTYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNGPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMA 241
BLAST of mRNA_Ecto-sp9_F_contig10830.723.1 vs.
Match: EsV-1-166 (n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMF4_ECTSI) HSP 1 Score: 214 bits (544), Expect = 1.720e-61 Identity = 127/270 (47.04%), Postives = 142/270 (52.59%), Query Frame = 2
Query: 341 PRG*LASVALSRWLNYTGNSCKHQGYDEFNPTSWPSSCVPSKADWINEAVGQWCGDGDAYPEEFWNCADVSITS----------------------AEQE------------------------EDKXXXEY--------------------EARTPAP----------------------------TAELEPATPVDSPTEPIVATFAPSAPPPVSTDPDCEDPVGAFGQCGGAEYDGSTCCTTGYDCEEM-DWHSECRPRDDRCSEDW 865
P G + + + + YTGNSCKH+GY EFNP SWPSSC PSKADWINE VGQ CGDGDAYPEEFWNCAD+SITS E+E +D+ E TPAP TAELEPATP+DSPTEPIVATFAPS PPP+S DCEDPVGAF QCGG YDGSTCC GY+CEEM + +SECRP+DDRCSE W
Sbjct: 235 PEGVVCDRCVVQMVYYTGNSCKHEGYAEFNPESWPSSCAPSKADWINEVVGQ-CGDGDAYPEEFWNCADISITSDGGPGTAPXXXXXXXXXXXXXXXEEEGTEAPMXXXXXXXXXXXXXXXXEFDDESTPXXXXXXXXXXXXXXXXXXXXXXEPTTPAPVEGDXXXXXXXXXXSMDGEDYXXXXXXXTAELEPATPMDSPTEPIVATFAPSVPPPISDHSDCEDPVGAFNQCGGEGYDGSTCCRAGYECEEMAECYSECRPKDDRCSEGW 503
BLAST of mRNA_Ecto-sp9_F_contig10830.723.1 vs.
Match: EsV-1-166 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM92_ECTSI) HSP 1 Score: 215 bits (547), Expect = 1.850e-60 Identity = 107/165 (64.85%), Postives = 117/165 (70.91%), Query Frame = 1
Query: 1 PHFNGERAENGNYMESDEVAQRHGICGDPEQ---------------------------------------GHIEMFLCDAHDLPDGPDSVVTQSCFNEYPLDRAEDDEFNSPIDPLNRGRFILDPPCRASETDQELVPGAFLGAVATARFQLPQGVTCERCVVQM 378
PHFNGERAENGNY+ES+EVAQRHGICGDPEQ GH+EMFLCDA DLP GPDS VTQSCFNE+PLDR +DD+FNSPIDP N GRFILDPPCRASETDQE++ GAF G VATARF+LPQG+TCERCVVQM
Sbjct: 78 PHFNGERAENGNYIESEEVAQRHGICGDPEQTAAEDSNKYGLENSNYPVLETYAEGGILEFKMVVSTYHWGHVEMFLCDADDLPGGPDSTVTQSCFNEHPLDRVDDDDFNSPIDPSNTGRFILDPPCRASETDQEMLDGAFPGDVATARFKLPQGLTCERCVVQM 242
BLAST of mRNA_Ecto-sp9_F_contig10830.723.1 vs.
Match: EsV-1-166 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM93_ECTSI) HSP 1 Score: 201 bits (511), Expect = 1.360e-58 Identity = 101/165 (61.21%), Postives = 114/165 (69.09%), Query Frame = 1
Query: 1 PHFNGERAENGNYMESDEVAQRHGICGDPEQ---------------------------------------GHIEMFLCDAHDLPDGPDSVVTQSCFNEYPLDRAEDDEFNSPIDPLNRGRFILDPPCRASETDQELVPGAFLGAVATARFQLPQGVTCERCVVQM 378
PHFNGERAENGNY+ES+EVA+RHGICGDPEQ GH+EMFLC+A +LP GPDS VTQSCFNE+PLDRA+DDEFN P DP N GRFILDPPCRASETDQ L+ GA+ VATARF+LPQG++CERCVVQM
Sbjct: 79 PHFNGERAENGNYIESEEVARRHGICGDPEQTAAESSNKYGQENSNYPVRETYAEGGILEVKIVVSTYHWGHVEMFLCNAANLPGGPDSTVTQSCFNEHPLDRADDDEFNGPADPDNTGRFILDPPCRASETDQALLDGAYPSDVATARFKLPQGLSCERCVVQM 243
BLAST of mRNA_Ecto-sp9_F_contig10830.723.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY6_9PHAE) HSP 1 Score: 210 bits (534), Expect = 9.510e-58 Identity = 105/165 (63.64%), Postives = 116/165 (70.30%), Query Frame = 1
Query: 1 PHFNGERAENGNYMESDEVAQRHGICGDPEQ---------------------------------------GHIEMFLCDAHDLPDGPDSVVTQSCFNEYPLDRAEDDEFNSPIDPLNRGRFILDPPCRASETDQELVPGAFLGAVATARFQLPQGVTCERCVVQM 378
PHFNG+RA NGNY+ES+EVAQRHGICGDPEQ GH+EMFLCDA+DLP GPDS VTQSCFNE+PLDR +DD FNSPIDP N GRFILDPPCRASETDQEL+ GAF G VATARF+LP+GV+CERCVVQM
Sbjct: 78 PHFNGDRAANGNYIESEEVAQRHGICGDPEQTAAEGSNLYGLENSNYPVLETYAEGGILEFKMVVSTYHWGHVEMFLCDANDLPGGPDSTVTQSCFNEHPLDRVDDDYFNSPIDPSNTGRFILDPPCRASETDQELLDGAFPGDVATARFKLPEGVSCERCVVQM 242
BLAST of mRNA_Ecto-sp9_F_contig10830.723.1 vs.
Match: EsV-1-166 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP25_ECTSI) HSP 1 Score: 196 bits (497), Expect = 6.660e-56 Identity = 100/143 (69.93%), Postives = 106/143 (74.13%), Query Frame = 1
Query: 28 NGNYMESDEVA----QRHG----------------------ICGDPEQGHIEMFLCDAHDLPDGPDSVVTQSCFNEYPLDRAEDDEFNSPIDPLNRGRFILDPPCRASETDQELVPGAFLGAVATARFQLPQGVTCERCVVQM 378
NGNY++SDE A R+G + GH+EMFLCDA DLPDGPDSVVTQSCFNEYPLDRAEDDEFNSPIDPLNRGRFILDPPCRASETDQEL+PGAF G VATARFQLPQGVTCERCVVQM
Sbjct: 49 NGNYIQSDETAAEGSNRYGQENSNYPVLETYAEGGILEVKIVVATYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNSPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQM 191
BLAST of mRNA_Ecto-sp9_F_contig10830.723.1 vs.
Match: EsV-1-166 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D7_ECTSI) HSP 1 Score: 141 bits (356), Expect = 2.140e-35 Identity = 73/161 (45.34%), Postives = 91/161 (56.52%), Query Frame = 1
Query: 13 GERAENGNYMESDEVAQRHGICGDPEQ---------------------------------------GHIEMFLCDAHDLPDGPDSVVTQSCFNEYPLDRAEDDEFNSPIDPLNRGRFILDPPCRASETDQELVPGAFLGAVATARFQLPQGVTCERCVVQM 378
GE AENGNY+E DE+A+RHGICGDPEQ GH+E F+C+A ++ D PD + Q CFN YPL RAE D+ NSPIDP GR+ +DP CR ETDQ GA G V A +QLP+G+TC+RC++QM
Sbjct: 59 GEMAENGNYLEKDEIAKRHGICGDPEQNEEEGANFYSTPNGDWPILNTYQEGQVLEIKLGMTAYHWGHVEFFICNADEMED-PDGIANQECFNNYPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQLPEGLTCDRCILQM 218
BLAST of mRNA_Ecto-sp9_F_contig10830.723.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1P0_9PHAE) HSP 1 Score: 136 bits (343), Expect = 4.600e-35 Identity = 62/92 (67.39%), Postives = 74/92 (80.43%), Query Frame = 1
Query: 94 GHIEMFLCDAHDLPDGPDSVVTQSCFNEYPLDRAEDDEFNSPIDPLNRGRFILDPPCRASETDQELVPGAFLGAVATARFQLPQGVTCERCV 369
GH+EMFLC+A +LP PDS TQSCFNE+PLDRA+DDE N P+DP N GRFILDPPCRASE DQE++ GA+ TARF+LPQG++ E CV
Sbjct: 48 GHVEMFLCNAANLPGDPDSTATQSCFNEHPLDRADDDELNGPVDPDNTGRFILDPPCRASEIDQEVLDGAYPCDETTARFKLPQGLSREGCV 139
BLAST of mRNA_Ecto-sp9_F_contig10830.723.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI36_9PHAE) HSP 1 Score: 134 bits (337), Expect = 7.890e-32 Identity = 60/95 (63.16%), Postives = 76/95 (80.00%), Query Frame = 1
Query: 94 GHIEMFLCDAHDLPDGPDSVVTQSCFNEYPLDRAEDDEFNSPIDPLNRGRFILDPPCRASETDQELVPGAFLGAVATARFQLPQGVTCERCVVQM 378
GH+E F+C+A D+ D PD VVTQ CFN +PLDRA+DD SPIDP + GR+ LDPPCRA ETDQ+ +PGA+ G VATAR++LP G+TC RC++QM
Sbjct: 214 GHLEFFICNAEDMSD-PDGVVTQGCFNMHPLDRADDDGDASPIDPDHIGRYYLDPPCRAGETDQDTLPGAYPGDVATARYKLPSGLTCSRCILQM 307 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10830.723.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig10830.723.1 >prot_Ecto-sp9_F_contig10830.723.1 ID=prot_Ecto-sp9_F_contig10830.723.1|Name=mRNA_Ecto-sp9_F_contig10830.723.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=56bp MDWHSECRPRDDRCSEDWRQCGGLDWEGPECCWPGAECVERNGQYHQCVPback to top mRNA from alignment at Ecto-sp9_F_contig10830:749..3980+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig10830.723.1 ID=mRNA_Ecto-sp9_F_contig10830.723.1|Name=mRNA_Ecto-sp9_F_contig10830.723.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3232bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10830:749..3980+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10830:749..3980+ >mRNA_Ecto-sp9_F_contig10830.723.1 ID=mRNA_Ecto-sp9_F_contig10830.723.1|Name=mRNA_Ecto-sp9_F_contig10830.723.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10830:749..3980+ (Ectocarpus species9 EcSCA_722f female)back to top |