prot_Ecto-sp9_F_contig10830.723.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig10830.723.1
Unique Nameprot_Ecto-sp9_F_contig10830.723.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length56
Homology
BLAST of mRNA_Ecto-sp9_F_contig10830.723.1 vs.
Match: CBM1 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD35_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 3.460e-25
Identity = 41/48 (85.42%), Postives = 42/48 (87.50%), Query Frame = 0
Query:    7 CRPRDDRCSEDWRQCGGLDWEGPECCWPGAECVERNGQYHQCVPEGAI 54
            CRPR DRCSE W QCGGL WEGPECCWPGAECVERN  +HQCVPEGAI
Sbjct:  432 CRPRGDRCSEGWGQCGGLHWEGPECCWPGAECVERNEHFHQCVPEGAI 479          
BLAST of mRNA_Ecto-sp9_F_contig10830.723.1 vs.
Match: Cellulase (n=1 Tax=Ascoidea rubescens DSM 1968 TaxID=1344418 RepID=A0A1D2VQW1_9ASCO)

HSP 1 Score: 54.3 bits (129), Expect = 4.220e-7
Identity = 19/39 (48.72%), Postives = 25/39 (64.10%), Query Frame = 0
Query:   12 DRCSEDWRQCGGLDWEGPECCWPGAECVERNGQYHQCVP 50
            ++C+  + QCGGL+W GP CC  G  C  +N  YHQC P
Sbjct:   27 EQCASLYGQCGGLNWNGPNCCTGGYLCSSQNPYYHQCTP 65          
BLAST of mRNA_Ecto-sp9_F_contig10830.723.1 vs.
Match: Beta-xylanase (n=1 Tax=Dentipellis fragilis TaxID=205917 RepID=A0A4Y9XV39_9AGAM)

HSP 1 Score: 53.5 bits (127), Expect = 7.960e-7
Identity = 19/36 (52.78%), Postives = 23/36 (63.89%), Query Frame = 0
Query:   15 SEDWRQCGGLDWEGPECCWPGAECVERNGQYHQCVP 50
            S++W QCGG+DW GP  C  G  CV  N  Y QC+P
Sbjct:   22 SQEWGQCGGIDWTGPTTCVAGTTCVVSNPYYSQCLP 57          
BLAST of mRNA_Ecto-sp9_F_contig10830.723.1 vs.
Match: Carbohydrate-binding (module family 1 protein n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3N2M6_PIRSE)

HSP 1 Score: 49.3 bits (116), Expect = 9.010e-6
Identity = 16/42 (38.10%), Postives = 26/42 (61.90%), Query Frame = 0
Query:    8 RPRDDRCSEDWRQCGGLDWEGPECCWPGAECVERNGQYHQCV 49
            +P   +C++ W QCGG ++ GP CC  G+ C + +  Y QC+
Sbjct:  108 KPSHKKCAKKWAQCGGKNYNGPNCCETGSTCHKVSDYYSQCI 149          
BLAST of mRNA_Ecto-sp9_F_contig10830.723.1 vs.
Match: Carbohydrate-binding (module family 1 protein n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3NMR3_PIRSE)

HSP 1 Score: 48.9 bits (115), Expect = 3.350e-5
Identity = 17/36 (47.22%), Postives = 22/36 (61.11%), Query Frame = 0
Query:   14 CSEDWRQCGGLDWEGPECCWPGAECVERNGQYHQCV 49
            C++ W QCGG+ + GP CC PG  C   N  Y QC+
Sbjct:  317 CADKWGQCGGIGFNGPNCCKPGLTCNIVNEYYSQCL 352          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10830.723.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
CBM13.460e-2585.42domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Cellulase4.220e-748.72n=1 Tax=Ascoidea rubescens DSM 1968 TaxID=1344418 ... [more]
Beta-xylanase7.960e-752.78n=1 Tax=Dentipellis fragilis TaxID=205917 RepID=A0... [more]
Carbohydrate-binding9.010e-638.10module family 1 protein n=1 Tax=Piromyces sp. (str... [more]
Carbohydrate-binding3.350e-547.22module family 1 protein n=1 Tax=Piromyces sp. (str... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000254Cellulose-binding domain, fungalSMARTSM00236fcbd_2coord: 16..49
e-value: 1.2E-6
score: 38.1
IPR000254Cellulose-binding domain, fungalPFAMPF00734CBM_1coord: 18..45
e-value: 3.3E-9
score: 36.5
IPR000254Cellulose-binding domain, fungalPROSITEPS51164CBM1_2coord: 13..49
score: 10.097
IPR035971Cellulose-binding domain superfamilySUPERFAMILY57180Cellulose-binding domaincoord: 16..49

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10830contigEcto-sp9_F_contig10830:3221..3980 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10830.723.1mRNA_Ecto-sp9_F_contig10830.723.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig10830 749..3980 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig10830.723.1 ID=prot_Ecto-sp9_F_contig10830.723.1|Name=mRNA_Ecto-sp9_F_contig10830.723.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=56bp
MDWHSECRPRDDRCSEDWRQCGGLDWEGPECCWPGAECVERNGQYHQCVP
EGAIL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000254Cellulose-bd_dom_fun
IPR035971CBD_sf