mRNA_Ecto-sp9_F_contig1077.672.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1077.672.1
Unique NamemRNA_Ecto-sp9_F_contig1077.672.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1077.672.1 vs.
Match: Light (harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 427 bits (1099), Expect = 2.160e-146
Identity = 222/224 (99.11%), Postives = 223/224 (99.55%), Query Frame = 1 
Query:    4 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASSASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDILPNFFF 675
            MVASQMFLGTAAALIASSTAFVAPVAVRSAAPAS+ASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPD EAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDILPNFFF
Sbjct:    1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDILPNFFF 224
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1077.672.1 vs.
Match: Light (harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 382 bits (982), Expect = 9.920e-129
Identity = 194/219 (88.58%), Postives = 209/219 (95.43%), Query Frame = 1 
Query:    4 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASSASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 660
            MVA+Q+FLG+AA LIASSTAFVAP+AVRSAAPASS+SALKMSAGSDYVATLPGAPF DGKIFDPL+LSDGA P DIKKWREAEIKHGRVAMLASLG+LVAE+YHPLFMG D+IGPA+ HFQEISAQ+PEFW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLKEDY+PGDLGFDPLNLKP+DEAALDVMKTKELNNGRLAMIGIAGML QEL+N  DIL
Sbjct:    1 MVATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADIL 219
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1077.672.1 vs.
Match: Light (harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 353 bits (905), Expect = 4.540e-117
Identity = 180/216 (83.33%), Postives = 196/216 (90.74%), Query Frame = 1 
Query:   13 SQMFLGTAAALIASSTAFVAPVAVRSAAPASSASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 660
            S MFLGTAA LIASSTAFVAP+AVRSAAPASSASALKMSAGSDYVATLPGAPF DGKIFDPL LSDGA PG+IK WREAEIKHGRVAMLA++G++VAE+YHPLFMG D+IGPA+ HFQEISAQFPEFWAFSLLGMAFIEYNTI  A+  PS VTGEGGL+++Y PGDLGFDPLNLKP D+A L+ M+TKELNNGRLAMIGIAGML QELVN  DIL
Sbjct:    5 SNMFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADIL 220
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1077.672.1 vs.
Match: LHCP (protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 319 bits (817), Expect = 3.160e-104
Identity = 174/219 (79.45%), Postives = 180/219 (82.19%), Query Frame = 1 
Query:    4 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASSASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 660
            MVASQMF+GTAA LIASSTAFVAP+AVRS     S+  LKMSAGSDYVATLPGAPFSDGKIFDPL LSDGAAPGDIKKWREAEIKHGRVAMLASLG++VAE                            FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDY+PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVN  DIL
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 191
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1077.672.1 vs.
Match: Light (harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 320 bits (819), Expect = 3.900e-104
Identity = 163/216 (75.46%), Postives = 188/216 (87.04%), Query Frame = 1 
Query:   13 SQMFLGTAAALIASSTAFVAPVAVRSAAPASSASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 660
            S MFLGTAA LIASS AFV P+AVRSAAPASSASALKMSAG+DY+ATLPGA   +GKIFD L L+DGA PG+IK WREAEIKHGRVAMLA++G++VAE+YHP FMG D+IGPA+ HFQEI+A+FP+FWA+SLLGMAFIEYNTI  A+  PS VTGEGGL+++Y PGDLGFDP  +KP D+A L+ M+ KELNNGRLAMIGI GML QELVNGQDIL
Sbjct:    5 SNMFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDIL 217
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1077.672.1 vs.
Match: Light (harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 306 bits (783), Expect = 4.820e-99
Identity = 147/160 (91.88%), Postives = 154/160 (96.25%), Query Frame = 1 
Query:  181 KIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 660
            +IFDPL LSDGAAPGDIKKWREAEIKHGRVAMLASLG++VAE+YHP FMG D+IGPA+ HFQEISAQFPEFWAFSLLGMAF+EYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVN  DIL
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 195
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1077.672.1 vs.
Match: LHCP (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 311 bits (796), Expect = 3.690e-98
Identity = 198/391 (50.64%), Postives = 208/391 (53.20%), Query Frame = 1 
Query:    4 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPAS-SASALKMSAGSDYVATLPGAPFSDGK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------IFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 660
            MVASQMF+GTAA LIASSTAFVAPVAVRS A  + S+S+L MSAGSDYVATLPGAPFSDGK                                                                                                                                                                           IFDPL LSDGAAPGDIKKWREAEIKHGRVAMLASLG++VAE+YHP FMG D+IGPA+ HFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDY+PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVN  DIL
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPVAVRSVAITTPSSSSLMMSAGSDYVATLPGAPFSDGKQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 391
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1077.672.1 vs.
Match: Light (harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 258 bits (658), Expect = 1.570e-80
Identity = 124/160 (77.50%), Postives = 138/160 (86.25%), Query Frame = 1 
Query:  181 KIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 660
            KIFDPL L+DGA  GDIK WREAEIKHGRVAMLASLG+LVAEEYHP FMG D+IGPA+ HFQEISA+FPEFWAFSLL +A IEYNTI  A+  PS VTGEGGL+++Y PGDLGFDPLNLKP D+ AL+ M+TKELNNGRLAMIGIAG L QELVN  +IL
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1077.672.1 vs.
Match: Light (harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 259 bits (663), Expect = 6.200e-80
Identity = 134/212 (63.21%), Postives = 165/212 (77.83%), Query Frame = 1 
Query:   25 LGTAAALIASSTAFVAPVAVR-SAAPASSASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDI 657
            +G A+   AS  AF+ P     SA P S+A+  +MSAGSDYV+TLPGAPF+DGK++DP+ LS  A P DIKKWREAEIKHGRVAMLAS+G+LVAE +HPLF+G D+IGPAI HF+EI+A+FP+FWA +LL +A++EY  I   F     VTGEGG++ DY+PGDLGFDPL L P+DE  L+VMKTKELN+GRLAMIGI GM+ QELV    I
Sbjct:   60 VGMASWCFASCEAFIVPTPTTLSARPTSTAA--RMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPI 269
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1077.672.1 vs.
Match: LHCP (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYI8_9PHAE)

HSP 1 Score: 237 bits (604), Expect = 9.530e-73
Identity = 139/219 (63.47%), Postives = 146/219 (66.67%), Query Frame = 1 
Query:    4 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASSASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 660
            MVASQMF+GTAA LIASSTAFV P+A+RS A   S+S  KMSAGSDYVATLPGAPFSDGKIFDPL LSDGAAPGDIKKWREAEIKHGRVAMLASLG++VAEE                                                              DY+PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVN  DIL
Sbjct:    1 MVASQMFIGTAATLIASSTAFVGPMAMRSVASTPSSSGFKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEE--------------------------------------------------------------DYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 157
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1077.672.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Light2.160e-14699.11harvesting complex protein n=2 Tax=Ectocarpus TaxI... [more]
Light9.920e-12988.58harvesting complex protein n=2 Tax=Ectocarpus TaxI... [more]
Light4.540e-11783.33harvesting complex protein n=1 Tax=Ectocarpus sili... [more]
LHCP3.160e-10479.45protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
Light3.900e-10475.46harvesting complex protein n=1 Tax=Ectocarpus sili... [more]
Light4.820e-9991.88harvesting complex protein n=1 Tax=Ectocarpus sili... [more]
LHCP3.690e-9850.64protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Light1.570e-8077.50harvesting complex protein n=1 Tax=Ectocarpus sili... [more]
Light6.200e-8063.21harvesting complex protein n=1 Tax=Ectocarpus sili... [more]
LHCP9.530e-7363.47protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1077contigEcto-sp9_F_contig1077:12618..15827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score433.0
Seed ortholog evalue8.8e-119
Seed eggNOG ortholog2880.D7G7Q9
KEGG koko:K08914
KEGG Pathwayko00196,ko01100,map00196,map01100
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2BEWM@1,2S15M@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-06_000710.1
Exons4
Model size1545
Cds size675
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1077.672.1prot_Ecto-sp9_F_contig1077.672.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1077 13485..15824 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928296.7872317-UTR-Ecto-sp9_F_contig1077:12617..134841622928296.7872317-UTR-Ecto-sp9_F_contig1077:12617..13484Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1077 12618..13484 -
1692277825.8292246-UTR-Ecto-sp9_F_contig1077:12617..134841692277825.8292246-UTR-Ecto-sp9_F_contig1077:12617..13484Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1077 12618..13484 -
1622928296.853115-UTR-Ecto-sp9_F_contig1077:15824..158271622928296.853115-UTR-Ecto-sp9_F_contig1077:15824..15827Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1077 15825..15827 -
1692277825.8799257-UTR-Ecto-sp9_F_contig1077:15824..158271692277825.8799257-UTR-Ecto-sp9_F_contig1077:15824..15827Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1077 15825..15827 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928296.802502-CDS-Ecto-sp9_F_contig1077:13484..137721622928296.802502-CDS-Ecto-sp9_F_contig1077:13484..13772Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1077 13485..13772 -
1692277825.8412979-CDS-Ecto-sp9_F_contig1077:13484..137721692277825.8412979-CDS-Ecto-sp9_F_contig1077:13484..13772Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1077 13485..13772 -
1622928296.8153303-CDS-Ecto-sp9_F_contig1077:14096..141801622928296.8153303-CDS-Ecto-sp9_F_contig1077:14096..14180Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1077 14097..14180 -
1692277825.8508682-CDS-Ecto-sp9_F_contig1077:14096..141801692277825.8508682-CDS-Ecto-sp9_F_contig1077:14096..14180Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1077 14097..14180 -
1622928296.8278933-CDS-Ecto-sp9_F_contig1077:14719..148421622928296.8278933-CDS-Ecto-sp9_F_contig1077:14719..14842Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1077 14720..14842 -
1692277825.8607807-CDS-Ecto-sp9_F_contig1077:14719..148421692277825.8607807-CDS-Ecto-sp9_F_contig1077:14719..14842Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1077 14720..14842 -
1622928296.8391342-CDS-Ecto-sp9_F_contig1077:15644..158241622928296.8391342-CDS-Ecto-sp9_F_contig1077:15644..15824Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1077 15645..15824 -
1692277825.8705971-CDS-Ecto-sp9_F_contig1077:15644..158241692277825.8705971-CDS-Ecto-sp9_F_contig1077:15644..15824Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1077 15645..15824 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1077.672.1

>prot_Ecto-sp9_F_contig1077.672.1 ID=prot_Ecto-sp9_F_contig1077.672.1|Name=mRNA_Ecto-sp9_F_contig1077.672.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=225bp
MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASSASALKMSAGSDYVAT
LPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVA
EEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAF
DTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLA
MIGIAGMLAQELVNGQDILPNFFF*
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mRNA from alignment at Ecto-sp9_F_contig1077:12618..15827-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1077.672.1 ID=mRNA_Ecto-sp9_F_contig1077.672.1|Name=mRNA_Ecto-sp9_F_contig1077.672.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3210bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1077:12618..15827- (Ectocarpus species9 EcSCA_722f female)
AAGATGGTCGCCTCCCAGATGTTCCTCGGCACTGCCGCTGCCCTCATCGC
CTCCTCGACTGCCTTCGTCGCACCCGTGGCCGTGCGATCTGCGGCACCAG
CGTCCTCTGCTTCGGCCCTCAAGATGAGCGCTGGGTCCGACTACGTCGCA
ACCCTGCCAGGTGCTCCCTTCTCGGATGGAAAGGTGAAACATAACCAGCC
ATGCCCGACGAAGTAGCAACATCAATGTCTGATCTGCATCGAGATGTGGA
AGGTCGTGCGCCGTGTCATTTTTTTTTACCCTAGGAGCTCGGTCGCACAC
GGTGTCCGCACAAGAAAAATCGGCGACATGCCCAGCTTTGGGTTTGGATA
GTGTGGCGTGGCTTTGGACGTGGTGCCGGTACTGTTTACGTCTCTGCTCT
CCGCCTGGGGTCCGGATCTGCTGTACATGTTGCACTCAGTCTGCATCTGA
CTCATGAAAATGATGAACTCGCACTGCCTGTGATGTAGTCTATGAAGTAC
GCACGAGTACGTGTTCTGTTTTTGCCCCCGGTGACTGTATCTACGTATCT
ACGGCTACCCTCGGTACCCAGCCCCTTTGTTTACGGCTGCTGACTTCCTA
GAGAATAGTTCTTTGCTGGTGTCGGGGAGGCGTGTATTCCGCTCTGACTG
AGTACCTACACACCTGGCGAGATGACGAATGCAACTCAAAACAACTCGCT
CTTTTTTTAGTACCTGCGGTGGGTGCCGCTCACGACAACGGTTTCACACC
CCGTTCGCAGCTCGTACCTGTCAGCGGATCGTGCGCATGGCATACTCCGA
CCGGGGTAGACATGGCATACTCCGACCGGGGTAGACATAGAGGGAGACTA
CGCGACCAGCCTGATCACGACAAAAAGCTGCCCGATGTACGTACGTAGAT
CCCGACATATGGGAGTATTTCCATGTTTGTTTCTGACTGTTTCACCCGCT
CGCAACGCGTCCTGCCGTTGTTGTTGTGTTTCAAGATTTTCGACCCCCTC
AGCTTGTCGGATGGCGCTGCCCCCGGCGACATCAAGAAGTGGCGCGAGGC
CGAGATCAAGCACGGGCGCGTGGCCATGCTTGCGTCCCTCGGGATTCTTG
TCGCAGAGGTAAGCTCCCATTCGAAGTAATCTTGAGAGCGGAAGGGATGT
TTGGTGTTAAGAACTCAAGTGTGATGGGTTGTTTGAGCTTGTACCCGTTG
AAATAGTTGCAACTTGCCATTGATCCTTCTTGGATACTACTGTGGTTTCA
AGTGAGAATGAGCGTGGACATTGGGGAGGTGATATCTTGTGAATTTGAGG
CTCGACAACGAGAAATTCGACTTTATTGTCTCATGCTTTCTCAAGACTCG
CTGAAAAATCTCGCGTAGAATATGACCACTCACTGGTGTAAATAAGGACG
CAGTGTAGTCTATACGTGCTATCCATCGTGTCGATGCAGTCTGTTTTTCG
CTATGACGTCAAGCAAATCGAGGTATGCTGGTTCAACCGACAGTTGAAAA
GTGCATTTTTCTCCTTCCTGCAAAATCATGTACTGCTATATCTACCTGGT
ACACTTTTGTGACGAGATCATCCACCCGTTGACTAGGCATGTGACAGAAT
ATGTGCTTACCCCTCCTGCTTGCCTCGACGCCCCGTGCCGCCCGCAGGAG
TACCACCCTCTGTTCATGGGTAAAGATTTCATCGGCCCGGCCATCATCCA
CTTTCAGGAGATCTCTGCGCAGTTCCCCGAGGTATGAGAACGTTTGATGT
TACACGTTTGCCAGCAACACCGACGCGTTTCGACAAGGTACACGAGAATA
TATGCATAGTATTTTGCTGTTCTCACTCAAAAGTGATTGATGTTGGTGGC
AATCTCCCGTGTCCCATCACAGTGGCGCAGACCGATCAGCACGTACGGCA
GTACATAGGTGATGCGTTTTTGGTGCAATGCCGCCATCTACGGCTCCCGT
GCCGCTGTTCCCGCTGCACCATGCAGTACAACCGAACATCTCTTTTCGCC
TCTCTGTTCCTCACTTCCCCGCCACCCATACTACCTCATGTCTCCCAAAC
CTCAGTTCTGGGCGTTCTCCCTCCTGGGCATGGCCTTCATCGAGTACAAC
ACCATCATGACCGCCTTCGACACCCCCAGCGCTGTGACCGGCGAGGGCGG
CCTGAAGGAGGACTACATCCCGGGAGACCTCGGCTTCGACCCCCTCAACC
TCAAACCCGACGACGAGGCGGCTCTGGACGTGATGAAGACCAAGGAGCTC
AACAACGGCCGTTTGGCCATGATCGGCATCGCCGGCATGTTGGCGCAGGA
GCTGGTTAACGGGCAGGACATCCTCCCCAACTTTTTCTTCTAAATGCTTG
GGCCTCATGGATTTCCTGCAGACGTTGTTGTGCGTGAACGTTTTTCGGCG
GCTGCCTTCGAATGGAGTTTCTGCTTTGAACCGCGCAGAAGCACCGCAGT
TTACCTCCGACGGCGATAAAGAAATGCGTGTAAGAACCTGGTGGTCCTTT
TGGGCTATAGAGGAGATCTTTGGCAAAACAAAATGTTTTTCGTTCTACGC
CGGCTAGCGGTTCTTTCCCAGGGTCAGTTGTGTGGGCAGTCACAAGGTTT
CCTCTCAGGAAGGCGAGCAAGCTACAAGTACCTGCGGAGTGTTTTAACAG
TTTGAGCTTTGTTATCTATGTAAGTGAGTCGCTTTTGTTGTGTCGCCTGT
GTGACATCACCACAGAAGGGTGGTCGGCGTTAAATATTCCCACACGGAGG
TACCATGAGATTCGCGTGCTACGCTCCAAGGTGCTCATCATGATTTTTTG
ATGAAATTTTGGTATTCAAATTCAACACCATTCAAATCGAAGCGTGTGTG
TGGTGCAGTAGTGGACAGGTGCGGTGTCTTTCAGTCCAGCGGAAGAGTCT
ACCGTAGGAACGTGGTGATGCAGTTCAGTATGTCAGCAAACCCGCACGGT
TTGTTGGAGATTGCGAATTCCCGCTTCGTCTTTGATTCAATGTCTGGGCA
ACCGTCACCCACCGCTATTTGGCACTGGGTATTATAATGGTGTTTTCTGT
ATGCCCGTTTCTATACATGCACACCCTCGGATAGAGAAAGAACGATCTTG
TCGCAGGCATCTCAGCTCAAGCCGCTCAACGATTGGACCTCTTTCACAAC
CATTATATAGAAAGATCGCTAGGGTGCTTCCCATGGCATTTCTCGCACCG
TCTTGACGAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1077:12618..15827-

>mRNA_Ecto-sp9_F_contig1077.672.1 ID=mRNA_Ecto-sp9_F_contig1077.672.1|Name=mRNA_Ecto-sp9_F_contig1077.672.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1350bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1077:12618..15827- (Ectocarpus species9 EcSCA_722f female)
ATGGTCGCCTCCCAGATGTTCCTCGGCACTGCCGCTGCCCTCATCGCCTC
CTCGACTGCCTTCGTCGCACCCGTGGCCGTGCGATCTGCGGCACCAGCGT
CCTCTGCTTCGGCCCTCAAGATGAGCGCTGGGTCCGACTACGTCGCAACC
CTGCCAGGTGCTCCCTTCTCGGATGGAAAGATGGTCGCCTCCCAGATGTT
CCTCGGCACTGCCGCTGCCCTCATCGCCTCCTCGACTGCCTTCGTCGCAC
CCGTGGCCGTGCGATCTGCGGCACCAGCGTCCTCTGCTTCGGCCCTCAAG
ATGAGCGCTGGGTCCGACTACGTCGCAACCCTGCCAGGTGCTCCCTTCTC
GGATGGAAAGATTTTCGACCCCCTCAGCTTGTCGGATGGCGCTGCCCCCG
GCGACATCAAGAAGTGGCGCGAGGCCGAGATCAAGCACGGGCGCGTGGCC
ATGCTTGCGTCCCTCGGGATTCTTGTCGCAGAGATTTTCGACCCCCTCAG
CTTGTCGGATGGCGCTGCCCCCGGCGACATCAAGAAGTGGCGCGAGGCCG
AGATCAAGCACGGGCGCGTGGCCATGCTTGCGTCCCTCGGGATTCTTGTC
GCAGAGGAGTACCACCCTCTGTTCATGGGTAAAGATTTCATCGGCCCGGC
CATCATCCACTTTCAGGAGATCTCTGCGCAGTTCCCCGAGGAGTACCACC
CTCTGTTCATGGGTAAAGATTTCATCGGCCCGGCCATCATCCACTTTCAG
GAGATCTCTGCGCAGTTCCCCGAGTTCTGGGCGTTCTCCCTCCTGGGCAT
GGCCTTCATCGAGTACAACACCATCATGACCGCCTTCGACACCCCCAGCG
CTGTGACCGGCGAGGGCGGCCTGAAGGAGGACTACATCCCGGGAGACCTC
GGCTTCGACCCCCTCAACCTCAAACCCGACGACGAGGCGGCTCTGGACGT
GATGAAGACCAAGGAGCTCAACAACGGCCGTTTGGCCATGATCGGCATCG
CCGGCATGTTGGCGCAGGAGCTGGTTAACGGGCAGGACATCCTCCCCAAC
TTTTTCTTCTAATTCTGGGCGTTCTCCCTCCTGGGCATGGCCTTCATCGA
GTACAACACCATCATGACCGCCTTCGACACCCCCAGCGCTGTGACCGGCG
AGGGCGGCCTGAAGGAGGACTACATCCCGGGAGACCTCGGCTTCGACCCC
CTCAACCTCAAACCCGACGACGAGGCGGCTCTGGACGTGATGAAGACCAA
GGAGCTCAACAACGGCCGTTTGGCCATGATCGGCATCGCCGGCATGTTGG
CGCAGGAGCTGGTTAACGGGCAGGACATCCTCCCCAACTTTTTCTTCTAA
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