prot_Ecto-sp9_F_contig1077.672.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig1077.672.1
Unique Name	prot_Ecto-sp9_F_contig1077.672.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	225

Homology

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BLAST of mRNA_Ecto-sp9_F_contig1077.672.1 vs.
Match: Light (harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 427 bits (1098), Expect = 5.940e-151
Identity = 222/224 (99.11%), Postives = 223/224 (99.55%), Query Frame = 0

Query:    1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASSASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDILPNFFF 224
            MVASQMFLGTAAALIASSTAFVAPVAVRSAAPAS+ASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPD EAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDILPNFFF
Sbjct:    1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDILPNFFF 224

[Close]

BLAST of mRNA_Ecto-sp9_F_contig1077.672.1 vs.
Match: Light (harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 382 bits (980), Expect = 4.970e-133
Identity = 194/219 (88.58%), Postives = 209/219 (95.43%), Query Frame = 0

Query:    1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASSASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219
            MVA+Q+FLG+AA LIASSTAFVAP+AVRSAAPASS+SALKMSAGSDYVATLPGAPF DGKIFDPL+LSDGA P DIKKWREAEIKHGRVAMLASLG+LVAE+YHPLFMG D+IGPA+ HFQEISAQ+PEFW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLKEDY+PGDLGFDPLNLKP+DEAALDVMKTKELNNGRLAMIGIAGML QEL+N  DIL
Sbjct:    1 MVATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADIL 219

[Close]

BLAST of mRNA_Ecto-sp9_F_contig1077.672.1 vs.
Match: Light (harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 352 bits (903), Expect = 2.770e-121
Identity = 180/216 (83.33%), Postives = 196/216 (90.74%), Query Frame = 0

Query:    4 SQMFLGTAAALIASSTAFVAPVAVRSAAPASSASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219
            S MFLGTAA LIASSTAFVAP+AVRSAAPASSASALKMSAGSDYVATLPGAPF DGKIFDPL LSDGA PG+IK WREAEIKHGRVAMLA++G++VAE+YHPLFMG D+IGPA+ HFQEISAQFPEFWAFSLLGMAFIEYNTI  A+  PS VTGEGGL+++Y PGDLGFDPLNLKP D+A L+ M+TKELNNGRLAMIGIAGML QELVN  DIL
Sbjct:    5 SNMFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADIL 220

[Close]

BLAST of mRNA_Ecto-sp9_F_contig1077.672.1 vs.
Match: LHCP (protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 318 bits (815), Expect = 2.530e-108
Identity = 174/219 (79.45%), Postives = 180/219 (82.19%), Query Frame = 0

Query:    1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASSASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219
            MVASQMF+GTAA LIASSTAFVAP+AVRS     S+  LKMSAGSDYVATLPGAPFSDGKIFDPL LSDGAAPGDIKKWREAEIKHGRVAMLASLG++VAE                            FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDY+PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVN  DIL
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 191

[Close]

BLAST of mRNA_Ecto-sp9_F_contig1077.672.1 vs.
Match: Light (harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 319 bits (817), Expect = 3.110e-108
Identity = 163/216 (75.46%), Postives = 188/216 (87.04%), Query Frame = 0

Query:    4 SQMFLGTAAALIASSTAFVAPVAVRSAAPASSASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219
            S MFLGTAA LIASS AFV P+AVRSAAPASSASALKMSAG+DY+ATLPGA   +GKIFD L L+DGA PG+IK WREAEIKHGRVAMLA++G++VAE+YHP FMG D+IGPA+ HFQEI+A+FP+FWA+SLLGMAFIEYNTI  A+  PS VTGEGGL+++Y PGDLGFDP  +KP D+A L+ M+ KELNNGRLAMIGI GML QELVNGQDIL
Sbjct:    5 SNMFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDIL 217

[Close]

BLAST of mRNA_Ecto-sp9_F_contig1077.672.1 vs.
Match: Light (harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 305 bits (781), Expect = 4.380e-103
Identity = 147/160 (91.88%), Postives = 154/160 (96.25%), Query Frame = 0

Query:   60 KIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219
            +IFDPL LSDGAAPGDIKKWREAEIKHGRVAMLASLG++VAE+YHP FMG D+IGPA+ HFQEISAQFPEFWAFSLLGMAF+EYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVN  DIL
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 195

[Close]

BLAST of mRNA_Ecto-sp9_F_contig1077.672.1 vs.
Match: LHCP (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 310 bits (794), Expect = 3.180e-102
Identity = 198/391 (50.64%), Postives = 208/391 (53.20%), Query Frame = 0

Query:    1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPAS-SASALKMSAGSDYVATLPGAPFSDGK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------IFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219
            MVASQMF+GTAA LIASSTAFVAPVAVRS A  + S+S+L MSAGSDYVATLPGAPFSDGK                                                                                                                                                                           IFDPL LSDGAAPGDIKKWREAEIKHGRVAMLASLG++VAE+YHP FMG D+IGPA+ HFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDY+PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVN  DIL
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPVAVRSVAITTPSSSSLMMSAGSDYVATLPGAPFSDGKQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQSFPSRLMKSIKFINNEYPIHDGEIGNGQMNFSRCHICVRSYPLGQIVSPVAVFDHRCPNALVPQIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 391

[Close]

BLAST of mRNA_Ecto-sp9_F_contig1077.672.1 vs.
Match: Light (harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 257 bits (656), Expect = 2.480e-84
Identity = 124/160 (77.50%), Postives = 138/160 (86.25%), Query Frame = 0

Query:   60 KIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219
            KIFDPL L+DGA  GDIK WREAEIKHGRVAMLASLG+LVAEEYHP FMG D+IGPA+ HFQEISA+FPEFWAFSLL +A IEYNTI  A+  PS VTGEGGL+++Y PGDLGFDPLNLKP D+ AL+ M+TKELNNGRLAMIGIAG L QELVN  +IL
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174

[Close]

BLAST of mRNA_Ecto-sp9_F_contig1077.672.1 vs.
Match: Light (harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 258 bits (660), Expect = 1.350e-83
Identity = 133/207 (64.25%), Postives = 164/207 (79.23%), Query Frame = 0

Query:    8 LGTAAALIASSTAFVAPVAVR-SAAPASSASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELV 213
            +G A+   AS  AF+ P     SA P S+A+  +MSAGSDYV+TLPGAPF+DGK++DP+ LS  A P DIKKWREAEIKHGRVAMLAS+G+LVAE +HPLF+G D+IGPAI HF+EI+A+FP+FWA +LL +A++EY  I   F     VTGEGG++ DY+PGDLGFDPL L P+DE  L+VMKTKELN+GRLAMIGI GM+ QELV
Sbjct:   60 VGMASWCFASCEAFIVPTPTTLSARPTSTAA--RMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELV 264

[Close]

BLAST of mRNA_Ecto-sp9_F_contig1077.672.1 vs.
Match: LHCP (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYI8_9PHAE)

HSP 1 Score: 236 bits (602), Expect = 2.050e-76
Identity = 139/219 (63.47%), Postives = 146/219 (66.67%), Query Frame = 0

Query:    1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASSASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219
            MVASQMF+GTAA LIASSTAFV P+A+RS A   S+S  KMSAGSDYVATLPGAPFSDGKIFDPL LSDGAAPGDIKKWREAEIKHGRVAMLASLG++VAEE                                                              DY+PGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVN  DIL
Sbjct:    1 MVASQMFIGTAATLIASSTAFVGPMAMRSVASTPSSSGFKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEE--------------------------------------------------------------DYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 157

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig1077.672.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig1077.672.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Light	5.940e-151	99.11	harvesting complex protein n=2 Tax=Ectocarpus TaxI...	[more]
Light	4.970e-133	88.58	harvesting complex protein n=2 Tax=Ectocarpus TaxI...	[more]
Light	2.770e-121	83.33	harvesting complex protein n=1 Tax=Ectocarpus sili...	[more]
LHCP	2.530e-108	79.45	protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5...	[more]
Light	3.110e-108	75.46	harvesting complex protein n=1 Tax=Ectocarpus sili...	[more]
Light	4.380e-103	91.88	harvesting complex protein n=1 Tax=Ectocarpus sili...	[more]
LHCP	3.180e-102	50.64	protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Light	2.480e-84	77.50	harvesting complex protein n=1 Tax=Ectocarpus sili...	[more]
Light	1.350e-83	64.25	harvesting complex protein n=1 Tax=Ectocarpus sili...	[more]
LHCP	2.050e-76	63.47	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]

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InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 37..223 e-value: 1.9E-37 score: 130.8
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 51..211 e-value: 4.3E-37 score: 128.1
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 9..215
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 9..215
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..6
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 7..17
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..35
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 18..35
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 36..224
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..20 score: 0.593
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 58..223

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig1077	contig	Ecto-sp9_F_contig1077:13485..15824 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig1077.672.1	mRNA_Ecto-sp9_F_contig1077.672.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig1077 12618..15827 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig1077.672.1 ID=prot_Ecto-sp9_F_contig1077.672.1|Name=mRNA_Ecto-sp9_F_contig1077.672.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=225bp
MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASSASALKMSAGSDYVAT
LPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVA
EEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAF
DTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLA
MIGIAGMLAQELVNGQDILPNFFF*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln