prot_Ecto-sp9_F_contig106.545.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig106.545.1
Unique Nameprot_Ecto-sp9_F_contig106.545.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length194
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig106.545.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPM9_ECTSI)

HSP 1 Score: 336 bits (862), Expect = 7.000e-115
Identity = 177/194 (91.24%), Postives = 179/194 (92.27%), Query Frame = 0 
Query:    1 MVLRSLFLVALPTSLNLGSAFLLPSVQQVVLPDTSTAIVRHQHDTGSRSMLLAXXXXXXXXXXXXATAKKSFLRNLERKRAGEEVASSALNADLHVLRSTPTQSSTTTVDDTRSWKGTWEICYAPHIQTLAKVILTEFPSVLYNFVSDDGRMVSHSRYESKVFGSGWFNADGRVVVLPASEGGTNEAPRQTVQV 194
            MVLRSLFLVALP SLNLGSAFLLPSVQQVVLPDTSTAI+RHQHDTGSRSML A            ATAKKSFLRNLERKRAGEEVASSALNADLHVL STPTQSSTTTVD+TRSWKGTWEICYAPHIQTLAKVILTEFPSVLYNFVSDDGRMVSHSRYESKVFGSGWFNADGRVVVLPASEGGTNEAPRQTVQV
Sbjct:    1 MVLRSLFLVALPISLNLGSAFLLPSVQQVVLPDTSTAIIRHQHDTGSRSMLSAAAPTAAGGSSSTATAKKSFLRNLERKRAGEEVASSALNADLHVLGSTPTQSSTTTVDNTRSWKGTWEICYAPHIQTLAKVILTEFPSVLYNFVSDDGRMVSHSRYESKVFGSGWFNADGRVVVLPASEGGTNEAPRQTVQV 194
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig106.545.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized7.000e-11591.24protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..194
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..15
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.706

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig106contigEcto-sp9_F_contig106:56754..57828 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig106.545.1mRNA_Ecto-sp9_F_contig106.545.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig106 56754..57828 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig106.545.1 ID=prot_Ecto-sp9_F_contig106.545.1|Name=mRNA_Ecto-sp9_F_contig106.545.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=194bp
MVLRSLFLVALPTSLNLGSAFLLPSVQQVVLPDTSTAIVRHQHDTGSRSM
LLAAAPTAAGGSSSTATAKKSFLRNLERKRAGEEVASSALNADLHVLRST
PTQSSTTTVDDTRSWKGTWEICYAPHIQTLAKVILTEFPSVLYNFVSDDG
RMVSHSRYESKVFGSGWFNADGRVVVLPASEGGTNEAPRQTVQV
back to top