mRNA_Ecto-sp9_F_contig106.545.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig106.545.1
Unique NamemRNA_Ecto-sp9_F_contig106.545.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig106.545.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPM9_ECTSI)

HSP 1 Score: 336 bits (862), Expect = 7.000e-115
Identity = 177/194 (91.24%), Postives = 179/194 (92.27%), Query Frame = 1 
Query:    1 MVLRSLFLVALPTSLNLGSAFLLPSVQQVVLPDTSTAIVRHQHDTGSRSMLLAXXXXXXXXXXXXATAKKSFLRNLERKRAGEEVASSALNADLHVLRSTPTQSSTTTVDDTRSWKGTWEICYAPHIQTLAKVILTEFPSVLYNFVSDDGRMVSHSRYESKVFGSGWFNADGRVVVLPASEGGTNEAPRQTVQV 582
            MVLRSLFLVALP SLNLGSAFLLPSVQQVVLPDTSTAI+RHQHDTGSRSML A            ATAKKSFLRNLERKRAGEEVASSALNADLHVL STPTQSSTTTVD+TRSWKGTWEICYAPHIQTLAKVILTEFPSVLYNFVSDDGRMVSHSRYESKVFGSGWFNADGRVVVLPASEGGTNEAPRQTVQV
Sbjct:    1 MVLRSLFLVALPISLNLGSAFLLPSVQQVVLPDTSTAIIRHQHDTGSRSMLSAAAPTAAGGSSSTATAKKSFLRNLERKRAGEEVASSALNADLHVLGSTPTQSSTTTVDNTRSWKGTWEICYAPHIQTLAKVILTEFPSVLYNFVSDDGRMVSHSRYESKVFGSGWFNADGRVVVLPASEGGTNEAPRQTVQV 194
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig106.545.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized7.000e-11591.24protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig106contigEcto-sp9_F_contig106:56754..57828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score337.4
Seed ortholog evalue4.4e-90
Seed eggNOG ortholog2880.D7FPM9
EggNOG OGs2E057@1,2S7KT@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-16_001370.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Exons2
Model size582
Cds size582
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928278.1584535-CDS-Ecto-sp9_F_contig106:56753..571491622928278.1584535-CDS-Ecto-sp9_F_contig106:56753..57149Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig106 56754..57149 +
1692277818.3950257-CDS-Ecto-sp9_F_contig106:56753..571491692277818.3950257-CDS-Ecto-sp9_F_contig106:56753..57149Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig106 56754..57149 +
1622928278.1772718-CDS-Ecto-sp9_F_contig106:57642..578281622928278.1772718-CDS-Ecto-sp9_F_contig106:57642..57828Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig106 57643..57828 +
1692277818.404234-CDS-Ecto-sp9_F_contig106:57642..578281692277818.404234-CDS-Ecto-sp9_F_contig106:57642..57828Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig106 57643..57828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig106.545.1prot_Ecto-sp9_F_contig106.545.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig106 56754..57828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig106.545.1

>prot_Ecto-sp9_F_contig106.545.1 ID=prot_Ecto-sp9_F_contig106.545.1|Name=mRNA_Ecto-sp9_F_contig106.545.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=194bp
MVLRSLFLVALPTSLNLGSAFLLPSVQQVVLPDTSTAIVRHQHDTGSRSM
LLAAAPTAAGGSSSTATAKKSFLRNLERKRAGEEVASSALNADLHVLRST
PTQSSTTTVDDTRSWKGTWEICYAPHIQTLAKVILTEFPSVLYNFVSDDG
RMVSHSRYESKVFGSGWFNADGRVVVLPASEGGTNEAPRQTVQV
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mRNA from alignment at Ecto-sp9_F_contig106:56754..57828+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig106.545.1 ID=mRNA_Ecto-sp9_F_contig106.545.1|Name=mRNA_Ecto-sp9_F_contig106.545.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1075bp|location=Sequence derived from alignment at Ecto-sp9_F_contig106:56754..57828+ (Ectocarpus species9 EcSCA_722f female)
ATGGTGCTGCGCAGCCTGTTCCTGGTTGCTTTGCCAACATCGTTGAACCT
CGGGAGTGCGTTCCTCCTTCCTTCCGTGCAGCAAGTAGTGCTGCCTGACA
CTTCAACTGCGATCGTACGGCATCAACATGACACAGGCAGCAGATCCATG
CTGTTGGCGGCAGCGCCCACGGCTGCTGGGGGAAGCAGCAGTACAGCAAC
GGCCAAGAAAAGTTTCCTCCGAAATCTGGAGCGCAAGCGAGCGGGGGAGG
AAGTGGCCTCCTCGGCATTGAATGCTGATCTCCACGTGCTTCGGTCAACA
CCGACTCAGTCATCAACCACCACCGTGGACGACACACGGAGTTGGAAGGG
AACGTGGGAAATCTGCTACGCTCCTCACATCCAGACCCTCGCGAAGGTGA
GTGTTGCAATTGCCGTGATTTCTATATAGAACGAAGGCGTGCTTGAGGAG
CCGATCACGTTCCAAACGCTGAAAATAATTACGAGTTAAGGTGTAGCATT
GTTGGTAACACCGTCGGGACGGAATTGGGGAGTGTACAAGTACGATGTGG
TGGTGCGAGCCGATCGCCCCCCCCCCCCCCCCCCCCCCCCCCGGGTGGGG
GGGGGGGGGGGGGCCCCCGGGCGCGCGGGCAGTGGCAGAGAGCAAGGCNN
NNNNNNNNTGTAAAGTTTGTTGGGAAACCCGGGGGGGGGGAATTGGGGAG
GGGTCAAGTACGACGTGTGGGTGGGAGCCGCACGCCCCCCCCCCCCCCCT
GGCCCTCGCACGTGTAGGTGGCTGGCGGAGCGACCTACGGACGTTCGGTA
GTTGACAGAGCCAAAGCCTGACGCACATCACCATGTACTTAAGCCGCGCT
TCCCAGTAACTCCCCAGTCACACTCAAAACTCGCGACAGGTGATTTTGAC
CGAGTTTCCGAGCGTCTTGTACAACTTCGTGTCCGACGACGGTAGGATGG
TGTCGCACTCCCGGTACGAGAGCAAGGTGTTTGGGTCGGGTTGGTTCAAC
GCCGATGGCAGGGTCGTTGTGCTGCCGGCGTCGGAGGGGGGTACCAATGA
AGCTCCGCGACAGACCGTACAGGTA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig106:56754..57828+

>mRNA_Ecto-sp9_F_contig106.545.1 ID=mRNA_Ecto-sp9_F_contig106.545.1|Name=mRNA_Ecto-sp9_F_contig106.545.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1164bp|location=Sequence derived from alignment at Ecto-sp9_F_contig106:56754..57828+ (Ectocarpus species9 EcSCA_722f female)
ATGGTGCTGCGCAGCCTGTTCCTGGTTGCTTTGCCAACATCGTTGAACCT
CGGGAGTGCGTTCCTCCTTCCTTCCGTGCAGCAAGTAGTGCTGCCTGACA
CTTCAACTGCGATCGTACGGCATCAACATGACACAGGCAGCAGATCCATG
CTGTTGGCGGCAGCGCCCACGGCTGCTGGGGGAAGCAGCAGTACAGCAAC
GGCCAAGAAAAGTTTCCTCCGAAATCTGGAGCGCAAGCGAGCGGGGGAGG
AAGTGGCCTCCTCGGCATTGAATGCTGATCTCCACGTGCTTCGGTCAACA
CCGACTCAGTCATCAACCACCACCGTGGACGACACACGGAGTTGGAAGGG
AACGTGGGAAATCTGCTACGCTCCTCACATCCAGACCCTCGCGAAGATGG
TGCTGCGCAGCCTGTTCCTGGTTGCTTTGCCAACATCGTTGAACCTCGGG
AGTGCGTTCCTCCTTCCTTCCGTGCAGCAAGTAGTGCTGCCTGACACTTC
AACTGCGATCGTACGGCATCAACATGACACAGGCAGCAGATCCATGCTGT
TGGCGGCAGCGCCCACGGCTGCTGGGGGAAGCAGCAGTACAGCAACGGCC
AAGAAAAGTTTCCTCCGAAATCTGGAGCGCAAGCGAGCGGGGGAGGAAGT
GGCCTCCTCGGCATTGAATGCTGATCTCCACGTGCTTCGGTCAACACCGA
CTCAGTCATCAACCACCACCGTGGACGACACACGGAGTTGGAAGGGAACG
TGGGAAATCTGCTACGCTCCTCACATCCAGACCCTCGCGAAGGTGATTTT
GACCGAGTTTCCGAGCGTCTTGTACAACTTCGTGTCCGACGACGGTAGGA
TGGTGTCGCACTCCCGGTACGAGAGCAAGGTGTTTGGGTCGGGTTGGTTC
AACGCCGATGGCAGGGTCGTTGTGCTGCCGGCGTCGGAGGGGGGTACCAA
TGAAGCTCCGCGACAGACCGTACAGGTAGTGATTTTGACCGAGTTTCCGA
GCGTCTTGTACAACTTCGTGTCCGACGACGGTAGGATGGTGTCGCACTCC
CGGTACGAGAGCAAGGTGTTTGGGTCGGGTTGGTTCAACGCCGATGGCAG
GGTCGTTGTGCTGCCGGCGTCGGAGGGGGGTACCAATGAAGCTCCGCGAC
AGACCGTACAGGTA
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