prot_Ecto-sp9_F_contig9970.18036.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig9970.18036.1
Unique Nameprot_Ecto-sp9_F_contig9970.18036.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length88
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9970.18036.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1P9_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 2.500e-27
Identity = 59/69 (85.51%), Postives = 61/69 (88.41%), Query Frame = 0 
Query:   13 ADKMHAEMKNQHPKLVVGVITLAVALPSALAGRRAFFRNGARALVLSSA--VVYGGAWMKRRGAATAVM 79
            A+KM AE+KNQHPKLVVG ITLAVALPSALAGRR FFRNGARALVLS    VVYGGAWMKRRGA TAVM
Sbjct:  104 ANKMRAEIKNQHPKLVVGGITLAVALPSALAGRRTFFRNGARALVLSPLPYVVYGGAWMKRRGATTAVM 172
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BLAST of mRNA_Ecto-sp9_F_contig9970.18036.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKU3_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 9.220e-25
Identity = 56/78 (71.79%), Postives = 63/78 (80.77%), Query Frame = 0 
Query:   11 SGADKMHAEMKNQHPKLVVGVITLAVALPSALAGRRAFFRNGARALVLSSAVVYGGAWMKRRGAATAVMRRSNNSHSP 88
            SGA    +E+K QHP+LVVG  TLAVALPSALAGRRAFFRNGARALVLSSAVVYGGAWMKRRG     +  S++S +P
Sbjct:  121 SGALTKCSEIKKQHPELVVGGFTLAVALPSALAGRRAFFRNGARALVLSSAVVYGGAWMKRRGLIPPQLVGSDDSEAP 198
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9970.18036.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.500e-2785.51protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized9.220e-2571.79protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 53..69
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 39..43
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..43
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 70..88
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 27..38
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..26
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 44..52
NoneNo IPR availableTMHMMTMhelixcoord: 27..49

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9970contigEcto-sp9_F_contig9970:3470..4697 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9970.18036.1mRNA_Ecto-sp9_F_contig9970.18036.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig9970 3468..4697 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig9970.18036.1 ID=prot_Ecto-sp9_F_contig9970.18036.1|Name=mRNA_Ecto-sp9_F_contig9970.18036.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=88bp
RVSTVGVRQVSGADKMHAEMKNQHPKLVVGVITLAVALPSALAGRRAFFR
NGARALVLSSAVVYGGAWMKRRGAATAVMRRSNNSHSP
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