mRNA_Ecto-sp9_F_contig9970.18036.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9970.18036.1
Unique NamemRNA_Ecto-sp9_F_contig9970.18036.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9970.18036.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1P9_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 2.500e-27
Identity = 59/69 (85.51%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:   37 ADKMHAEMKNQHPKLVVGVITLAVALPSALAGRRAFFRNGARALVLSSA--VVYGGAWMKRRGAATAVM 237
            A+KM AE+KNQHPKLVVG ITLAVALPSALAGRR FFRNGARALVLS    VVYGGAWMKRRGA TAVM
Sbjct:  104 ANKMRAEIKNQHPKLVVGGITLAVALPSALAGRRTFFRNGARALVLSPLPYVVYGGAWMKRRGATTAVM 172
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BLAST of mRNA_Ecto-sp9_F_contig9970.18036.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKU3_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 9.220e-25
Identity = 56/78 (71.79%), Postives = 63/78 (80.77%), Query Frame = 1 
Query:   31 SGADKMHAEMKNQHPKLVVGVITLAVALPSALAGRRAFFRNGARALVLSSAVVYGGAWMKRRGAATAVMRRSNNSHSP 264
            SGA    +E+K QHP+LVVG  TLAVALPSALAGRRAFFRNGARALVLSSAVVYGGAWMKRRG     +  S++S +P
Sbjct:  121 SGALTKCSEIKKQHPELVVGGFTLAVALPSALAGRRAFFRNGARALVLSSAVVYGGAWMKRRGLIPPQLVGSDDSEAP 198
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9970.18036.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.500e-2785.51protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized9.220e-2571.79protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9970contigEcto-sp9_F_contig9970:3468..4697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size268
Cds size264
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9970.18036.1prot_Ecto-sp9_F_contig9970.18036.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9970 3470..4697 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931093.979286-CDS-Ecto-sp9_F_contig9970:3469..36061622931093.979286-CDS-Ecto-sp9_F_contig9970:3469..3606Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9970 3470..3606 -
1692279030.3834534-CDS-Ecto-sp9_F_contig9970:3469..36061692279030.3834534-CDS-Ecto-sp9_F_contig9970:3469..3606Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9970 3470..3606 -
1622931094.0014067-CDS-Ecto-sp9_F_contig9970:4127..42191622931094.0014067-CDS-Ecto-sp9_F_contig9970:4127..4219Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9970 4128..4219 -
1692279030.3924534-CDS-Ecto-sp9_F_contig9970:4127..42191692279030.3924534-CDS-Ecto-sp9_F_contig9970:4127..4219Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9970 4128..4219 -
1622931094.0182393-CDS-Ecto-sp9_F_contig9970:4662..46971622931094.0182393-CDS-Ecto-sp9_F_contig9970:4662..4697Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9970 4663..4697 -
1692279030.4023435-CDS-Ecto-sp9_F_contig9970:4662..46971692279030.4023435-CDS-Ecto-sp9_F_contig9970:4662..4697Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9970 4663..4697 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9970.18036.1

>prot_Ecto-sp9_F_contig9970.18036.1 ID=prot_Ecto-sp9_F_contig9970.18036.1|Name=mRNA_Ecto-sp9_F_contig9970.18036.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=88bp
RVSTVGVRQVSGADKMHAEMKNQHPKLVVGVITLAVALPSALAGRRAFFR
NGARALVLSSAVVYGGAWMKRRGAATAVMRRSNNSHSP
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mRNA from alignment at Ecto-sp9_F_contig9970:3468..4697-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9970.18036.1 ID=mRNA_Ecto-sp9_F_contig9970.18036.1|Name=mRNA_Ecto-sp9_F_contig9970.18036.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1230bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9970:3468..4697- (Ectocarpus species9 EcSCA_722f female)
CGCGTTTCTACTGTAGGAGTTCGACAAGTCAGCGGGTGAGAGCAGAGAGA
GAGAGAGGCACACGCGTGTTGTTGTTGTTGTTGTTGTTGTTGTGGTAGTG
GTAGTGGTGCCGTTGTTTGGGGTAGAAATGATATTGGTGTTGGTAGTGTG
TGGTGGGATGCTTGGAGCCCATTTCTCAAAGGGCAACAACTATTTACCTG
AGTTTGGGGTATCTACATACTTCTCTGGTACCCAAATTGAGGTACAGAGT
CCCCTGCTTGCTTCCACATCCTTTTTGTGAAATGCGGCTACTGCACGCAG
CGTGGAGCTTGCTCACTAGTGATGAACTGTCTGCTATGGCTCTCTCCTCC
TCCTCATCATCATCGCCTTTTGCCTGTTGTCGGCGTCGATTGTCACTGGA
GGTTCATCGATTTTTGTCGGTGGCTGTGTCACGCCTCCCTGTTGTTTTTA
TGCATGTACACTGCTGTCGGTCTGTCAGCGCTGACAAGATGCACGCGGAG
ATGAAGAACCAACACCCCAAGCTCGTGGTCGGGGTAATCACGCTCGCAGT
GGCCCTGCCTTCGGCTCTCGGTGAGCAAGCTATCTCAGGCACCGACCTAC
CTGCAAGTGCTGTGTAATAGTCATGTGGAGACGGCTCAGTGTTGTGTCAT
CTACGGATTGTATAATCGTTTTCGAGCTGGAGATGGAGGACGATGCGCTT
GCTTGCGGTGGCTCCGCCTTCCACGCGGGATGGGTAAGCAAGGGGTTTAA
GGGGGTATAGCTCGCCACTGCTGTTGCATTTATTGGGGAATGTTATCATT
TTTTGCGGCGCTTCTCGAACGGTAGAAAACCTAGTACTTTGCCGCTGCGC
GCCGGCGTTGGGTGCGCTTCTGGTCACCACTGCTGCTACGTGGGCCGGAA
TACGACACGTGTGAAGGACCTACCTTTCTTTGGCCGGATGTGGACAACAG
CCTCGCCTGCTTCGTTTATTACTTTGAACAATACCGTTCCTCGTCAGCAT
GCTTGTGTGGGTGGCTGCCTCTGCCACACAGCAGTAACCGACAAAAATAA
CGGACGTGTTCTTTCTGTTTTTTTCGTGAATTGTTTTCCAGCCGGACGGC
GGGCGTTCTTCAGGAACGGCGCGAGAGCTTTGGTGCTGTCGTCTGCCGTG
GTCTACGGGGGAGCATGGATGAAGCGGCGAGGCGCCGCGACCGCAGTGAT
GCGTCGGTCGAACAATTCACATAGCCCACG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9970:3468..4697-

>mRNA_Ecto-sp9_F_contig9970.18036.1 ID=mRNA_Ecto-sp9_F_contig9970.18036.1|Name=mRNA_Ecto-sp9_F_contig9970.18036.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=528bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9970:3468..4697- (Ectocarpus species9 EcSCA_722f female)
CGCGTTTCTACTGTAGGAGTTCGACAAGTCAGCGGCGCGTTTCTACTGTA
GGAGTTCGACAAGTCAGCGGCGCTGACAAGATGCACGCGGAGATGAAGAA
CCAACACCCCAAGCTCGTGGTCGGGGTAATCACGCTCGCAGTGGCCCTGC
CTTCGGCTCTCGCGCTGACAAGATGCACGCGGAGATGAAGAACCAACACC
CCAAGCTCGTGGTCGGGGTAATCACGCTCGCAGTGGCCCTGCCTTCGGCT
CTCGCCGGACGGCGGGCGTTCTTCAGGAACGGCGCGAGAGCTTTGGTGCT
GTCGTCTGCCGTGGTCTACGGGGGAGCATGGATGAAGCGGCGAGGCGCCG
CGACCGCAGTGATGCGTCGGTCGAACAATTCACATAGCCCACCGGACGGC
GGGCGTTCTTCAGGAACGGCGCGAGAGCTTTGGTGCTGTCGTCTGCCGTG
GTCTACGGGGGAGCATGGATGAAGCGGCGAGGCGCCGCGACCGCAGTGAT
GCGTCGGTCGAACAATTCACATAGCCCA
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