prot_Ecto-sp9_F_contig98.17885.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig98.17885.1
Unique Nameprot_Ecto-sp9_F_contig98.17885.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length202
Homology
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BLAST of mRNA_Ecto-sp9_F_contig98.17885.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWC3_ECTSI)

HSP 1 Score: 390 bits (1001), Expect = 1.370e-124
Identity = 196/201 (97.51%), Postives = 198/201 (98.51%), Query Frame = 0 
Query:    1 MDPVPVLELFDLETPAQALCIDGAGKALAAGGEDGMVAVWDIATGALSATFSGCADQSPIVSIRWAETGDGAHSIPGGGNTMACLVLASAVGEIWRVSPVGVPLGSLRLDSEVVSMDSDGRCTVVACRDGSLRLLGSLEDGGFTQTVVRESGHAGDITCLHVCAWDGGGSANNGAGNAAVVVTGSDGGAVRVWDVMHRYRV 201
            MDPVPVLELFDLETPAQALCIDGAGKALAAGGEDGMVAVWDIATGALSATFSGCADQSPIVSIRWAETGDGAHSIPGGG  MACLVLASAVGEIWRVSPVGVPLGSLRLDSEVV+MDSDGRCTVVACRDGSLRLLGSLEDGGFTQTVVRESGHAGDITCLHVCAWD GGSANNGAGNAAV+VTGSDGGAVRVWDVMHRYRV
Sbjct: 1079 MDPVPVLELFDLETPAQALCIDGAGKALAAGGEDGMVAVWDIATGALSATFSGCADQSPIVSIRWAETGDGAHSIPGGG--MACLVLASAVGEIWRVSPVGVPLGSLRLDSEVVAMDSDGRCTVVACRDGSLRLLGSLEDGGFTQTVVRESGHAGDITCLHVCAWDSGGSANNGAGNAAVIVTGSDGGAVRVWDVMHRYRV 1277
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BLAST of mRNA_Ecto-sp9_F_contig98.17885.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC57_9PHAE)

HSP 1 Score: 366 bits (939), Expect = 1.390e-115
Identity = 187/205 (91.22%), Postives = 192/205 (93.66%), Query Frame = 0 
Query:    1 MDPVPVLELFDLETPAQALCIDGAGKALAAGGEDGMVAVWDIATGALSATFSGCADQSPIVSIRWAETGDGAHSIPGGGNTMACLVLASAVGEIWRVSPVGVPLGSLRLDSEVVSMDSDGRCTVVACRDGSLRLLGSLEDGGFTQTVV----RESGHAGDITCLHVCAWDGGGSANNGAGNAAVVVTGSDGGAVRVWDVMHRYRV 201
            M+PVPVLELFDLETPAQALCIDGAGKALAAGGEDGMVAVWDIATGALSA FSGCADQSPIVSIRWAETGDG HSIPGGG   ACLVLASAVGEIWRVSPVGVPLGSLRLDSEVV+MDSDGRCTVVACRDGSLRLLGSLEDGGFTQ  +    RESGHAGDITCL VCAWD GG+ANNGAGNAAV+VTGSDGGAVRVWDVMHRYRV
Sbjct: 1084 MNPVPVLELFDLETPAQALCIDGAGKALAAGGEDGMVAVWDIATGALSAAFSGCADQSPIVSIRWAETGDGTHSIPGGGT--ACLVLASAVGEIWRVSPVGVPLGSLRLDSEVVAMDSDGRCTVVACRDGSLRLLGSLEDGGFTQASLWFWLRESGHAGDITCLRVCAWDCGGNANNGAGNAAVIVTGSDGGAVRVWDVMHRYRV 1286
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BLAST of mRNA_Ecto-sp9_F_contig98.17885.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFP3_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 3.200e-16
Identity = 48/139 (34.53%), Postives = 77/139 (55.40%), Query Frame = 0 
Query:    1 MDPVPVLELFDLETPAQALCIDGAGKALAAGGEDGMVAVWDIATGALSATFSGCADQSPIVSIRWAETGDGAHSIPGGGNTMACLVLASAVGEIWRVSPVGVPLGSLRLDSEVVSMDSDGRCTVVACRDGSLRLLGSLE 139
            ++P P ++ FDLETP  ++ ID +G+ +AAG EDG VAVW++ +GA+  ++      + + ++ W   GD             C++ A   G I R S  G   G L L   + +M SDG  T+VAC +G++R+L S +
Sbjct:  749 LEPAPAMDFFDLETPIHSVAIDPSGRLVAAGAEDGKVAVWEVHSGAMVFSYEAPTAHA-VCAVLWVRRGDA-----------LCVMTALTSGYICRHSESGTLEGCLDLSVGITTMLSDGYTTIVACANGNVRILASCD 875
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig98.17885.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized1.370e-12497.51protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.390e-11591.22protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.200e-1634.53protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 144..194
e-value: 0.089
score: 21.9
coord: 100..136
e-value: 380.0
score: 0.7
coord: 2..41
e-value: 0.67
score: 18.1
IPR001680WD40 repeatPFAMPF00400WD40coord: 151..194
e-value: 0.039
score: 14.8
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 25..50
score: 9.506
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 5..200
e-value: 3.7E-19
score: 70.5
NoneNo IPR availablePANTHERPTHR44156FAMILY NOT NAMEDcoord: 17..196
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 28..42
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 9..50
score: 9.019
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 13..195

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig98contigEcto-sp9_F_contig98:152..2491 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig98.17885.1mRNA_Ecto-sp9_F_contig98.17885.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig98 125..3584 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig98.17885.1 ID=prot_Ecto-sp9_F_contig98.17885.1|Name=mRNA_Ecto-sp9_F_contig98.17885.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=202bp
MDPVPVLELFDLETPAQALCIDGAGKALAAGGEDGMVAVWDIATGALSAT
FSGCADQSPIVSIRWAETGDGAHSIPGGGNTMACLVLASAVGEIWRVSPV
GVPLGSLRLDSEVVSMDSDGRCTVVACRDGSLRLLGSLEDGGFTQTVVRE
SGHAGDITCLHVCAWDGGGSANNGAGNAAVVVTGSDGGAVRVWDVMHRYR
V*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf