mRNA_Ecto-sp9_F_contig98.17885.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig98.17885.1
Unique NamemRNA_Ecto-sp9_F_contig98.17885.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig98.17885.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWC3_ECTSI)

HSP 1 Score: 407 bits (1047), Expect = 2.470e-125
Identity = 205/210 (97.62%), Postives = 207/210 (98.57%), Query Frame = 1 
Query:    1 KVWEISSVEMDPVPVLELFDLETPAQALCIDGAGKALAAGGEDGMVAVWDIATGALSATFSGCADQSPIVSIRWAETGDGAHSIPGGGNTMACLVLASAVGEIWRVSPVGVPLGSLRLDSEVVSMDSDGRCTVVACRDGSLRLLGSLEDGGFTQTVVRESGHAGDITCLHVCAWDGGGSANNGAGNAAVVVTGSDGGAVRVWDVMHRYRV 630
            KVWEISSVEMDPVPVLELFDLETPAQALCIDGAGKALAAGGEDGMVAVWDIATGALSATFSGCADQSPIVSIRWAETGDGAHSIPGGG  MACLVLASAVGEIWRVSPVGVPLGSLRLDSEVV+MDSDGRCTVVACRDGSLRLLGSLEDGGFTQTVVRESGHAGDITCLHVCAWD GGSANNGAGNAAV+VTGSDGGAVRVWDVMHRYRV
Sbjct: 1070 KVWEISSVEMDPVPVLELFDLETPAQALCIDGAGKALAAGGEDGMVAVWDIATGALSATFSGCADQSPIVSIRWAETGDGAHSIPGGG--MACLVLASAVGEIWRVSPVGVPLGSLRLDSEVVAMDSDGRCTVVACRDGSLRLLGSLEDGGFTQTVVRESGHAGDITCLHVCAWDSGGSANNGAGNAAVIVTGSDGGAVRVWDVMHRYRV 1277
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BLAST of mRNA_Ecto-sp9_F_contig98.17885.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC57_9PHAE)

HSP 1 Score: 382 bits (981), Expect = 8.720e-116
Identity = 195/214 (91.12%), Postives = 200/214 (93.46%), Query Frame = 1 
Query:    1 KVWEISSVEMDPVPVLELFDLETPAQALCIDGAGKALAAGGEDGMVAVWDIATGALSATFSGCADQSPIVSIRWAETGDGAHSIPGGGNTMACLVLASAVGEIWRVSPVGVPLGSLRLDSEVVSMDSDGRCTVVACRDGSLRLLGSLEDGGFTQTVV----RESGHAGDITCLHVCAWDGGGSANNGAGNAAVVVTGSDGGAVRVWDVMHRYRV 630
            KVWEI SVEM+PVPVLELFDLETPAQALCIDGAGKALAAGGEDGMVAVWDIATGALSA FSGCADQSPIVSIRWAETGDG HSIPGGG   ACLVLASAVGEIWRVSPVGVPLGSLRLDSEVV+MDSDGRCTVVACRDGSLRLLGSLEDGGFTQ  +    RESGHAGDITCL VCAWD GG+ANNGAGNAAV+VTGSDGGAVRVWDVMHRYRV
Sbjct: 1075 KVWEIGSVEMNPVPVLELFDLETPAQALCIDGAGKALAAGGEDGMVAVWDIATGALSAAFSGCADQSPIVSIRWAETGDGTHSIPGGGT--ACLVLASAVGEIWRVSPVGVPLGSLRLDSEVVAMDSDGRCTVVACRDGSLRLLGSLEDGGFTQASLWFWLRESGHAGDITCLRVCAWDCGGNANNGAGNAAVIVTGSDGGAVRVWDVMHRYRV 1286
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BLAST of mRNA_Ecto-sp9_F_contig98.17885.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFP3_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 4.710e-16
Identity = 51/148 (34.46%), Postives = 81/148 (54.73%), Query Frame = 1 
Query:    1 KVWEISSVEMDPVPVLELFDLETPAQALCIDGAGKALAAGGEDGMVAVWDIATGALSATFSGCADQSPIVSIRWAETGDGAHSIPGGGNTMACLVLASAVGEIWRVSPVGVPLGSLRLDSEVVSMDSDGRCTVVACRDGSLRLLGSLE 444
            KVW +    ++P P ++ FDLETP  ++ ID +G+ +AAG EDG VAVW++ +GA+  ++      + + ++ W   GD             C++ A   G I R S  G   G L L   + +M SDG  T+VAC +G++R+L S +
Sbjct:  740 KVWGLQETGLEPAPAMDFFDLETPIHSVAIDPSGRLVAAGAEDGKVAVWEVHSGAMVFSYEAPTAHA-VCAVLWVRRGDA-----------LCVMTALTSGYICRHSESGTLEGCLDLSVGITTMLSDGYTTIVACANGNVRILASCD 875
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig98.17885.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized2.470e-12597.62protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized8.720e-11691.12protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.710e-1634.46protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig98contigEcto-sp9_F_contig98:125..3584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score392.5
Seed ortholog evalue1.2e-106
Seed eggNOG ortholog2880.D7FWC3
KEGG koko:K18953,ko:K22262
KEGG Pathwayko04071,map04071
EggNOG free text desc.aggrephagy
EggNOG OGsKOG1786@1,KOG1786@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons4
Model size1726
Cds size606
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig98.17885.1prot_Ecto-sp9_F_contig98.17885.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig98 152..2491 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931071.4065733-UTR-Ecto-sp9_F_contig98:124..1511622931071.4065733-UTR-Ecto-sp9_F_contig98:124..151Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig98 125..151 +
1692279019.4023488-UTR-Ecto-sp9_F_contig98:124..1511692279019.4023488-UTR-Ecto-sp9_F_contig98:124..151Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig98 125..151 +
1622931071.5018988-UTR-Ecto-sp9_F_contig98:2491..35841622931071.5018988-UTR-Ecto-sp9_F_contig98:2491..3584Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig98 2492..3584 +
1692279019.4814286-UTR-Ecto-sp9_F_contig98:2491..35841692279019.4814286-UTR-Ecto-sp9_F_contig98:2491..3584Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig98 2492..3584 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931071.4224663-CDS-Ecto-sp9_F_contig98:151..3001622931071.4224663-CDS-Ecto-sp9_F_contig98:151..300Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig98 152..300 +
1692279019.4253979-CDS-Ecto-sp9_F_contig98:151..3001692279019.4253979-CDS-Ecto-sp9_F_contig98:151..300Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig98 152..300 +
1622931071.4375732-CDS-Ecto-sp9_F_contig98:637..8111622931071.4375732-CDS-Ecto-sp9_F_contig98:637..811Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig98 638..811 +
1692279019.439477-CDS-Ecto-sp9_F_contig98:637..8111692279019.439477-CDS-Ecto-sp9_F_contig98:637..811Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig98 638..811 +
1622931071.4601443-CDS-Ecto-sp9_F_contig98:1408..15201622931071.4601443-CDS-Ecto-sp9_F_contig98:1408..1520Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig98 1409..1520 +
1692279019.450178-CDS-Ecto-sp9_F_contig98:1408..15201692279019.450178-CDS-Ecto-sp9_F_contig98:1408..1520Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig98 1409..1520 +
1622931071.4811687-CDS-Ecto-sp9_F_contig98:2320..24911622931071.4811687-CDS-Ecto-sp9_F_contig98:2320..2491Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig98 2321..2491 +
1692279019.4682775-CDS-Ecto-sp9_F_contig98:2320..24911692279019.4682775-CDS-Ecto-sp9_F_contig98:2320..2491Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig98 2321..2491 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig98.17885.1

>prot_Ecto-sp9_F_contig98.17885.1 ID=prot_Ecto-sp9_F_contig98.17885.1|Name=mRNA_Ecto-sp9_F_contig98.17885.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=202bp
MDPVPVLELFDLETPAQALCIDGAGKALAAGGEDGMVAVWDIATGALSAT
FSGCADQSPIVSIRWAETGDGAHSIPGGGNTMACLVLASAVGEIWRVSPV
GVPLGSLRLDSEVVSMDSDGRCTVVACRDGSLRLLGSLEDGGFTQTVVRE
SGHAGDITCLHVCAWDGGGSANNGAGNAAVVVTGSDGGAVRVWDVMHRYR
V*
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mRNA from alignment at Ecto-sp9_F_contig98:125..3584+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig98.17885.1 ID=mRNA_Ecto-sp9_F_contig98.17885.1|Name=mRNA_Ecto-sp9_F_contig98.17885.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3460bp|location=Sequence derived from alignment at Ecto-sp9_F_contig98:125..3584+ (Ectocarpus species9 EcSCA_722f female)
AAGGTATGGGAGATCAGTTCCGTGGAGATGGACCCCGTCCCCGTGCTCGA
GCTCTTCGACCTGGAAACCCCCGCACAGGCGCTATGCATCGACGGGGCCG
GGAAAGCTCTCGCCGCCGGCGGGGAGGACGGGATGGTTGCGGTCTGGGAC
ATCGCCACCGGCGCCCTATCAGCCACGTAAGTCGTTTGTTTGTTACGGGA
GGAGGCGTGGGTTGGCGGGTCAAGCCCCCCTCTACCCTGTTAAGATGATA
TCAAACGGAATGACTGGCGCCACACCATCGCAGTAGCGGCAATATCCACG
TACAACAACGACGGTGACCATAACGACAGTTTCTCGTGACAATGTACAAC
AACGACCGTTTCTTGTGACAATGTACAACAACGACCGTTTCTCGTGACAA
TGTACAACAACGACCGTTTCTCGTGACAATGTACAACAACGACCGTTTCT
TGTGACAATGTACAAGAACCGGATTTGATCTGTCGGCACCTCTGTTCGTT
TCGAAAAAAACAGGTTTAGCGGCTGTGCCGACCAGAGCCCCATCGTGTCA
ATACGATGGGCGGAAACCGGGGACGGTGCACATTCAATCCCCGGCGGTGG
CAATACGATGGCGTGTTTGGTGTTGGCATCAGCTGTCGGCGAGATCTGGC
GCGTGTCTCCGGTCGGTGTGCCCCTGGGGTCCCTAAGGTATCTATCATGC
GTGTGTTCTGCTGTCATGTTACAAGCGTTGTTGGGTCTTTCAGTTTCTGC
TGATGTGCGTGCATCTGGTGTTGCTTGTGACTGGCGTGTCGTCGCTTTCT
ATTCCCTTTGCTTCTCGGCCGTGGGCAACATATCTGATTTTTGCGCGTGT
ATCGTGGTTGTTGGCGTGACCCTCGTGATGCCAACTCGGGGAAGATGGGT
TTCGCGTTTGTATTTTTGTTCTTCTTTCGGTGGATGGAGGAAGAATGGGT
ACGGTTCGGCTTGCTTACCGGCCGATTGGGCCTTTTTCCTTATCCTTGCG
ACACGCTCACCGTCTGATGCACACTCTCACGCTCACCAGGGATGTTGCCG
AAACGTCGTAGGACGTGACACCGCCGCGTGTATGTCGTGACAAGTTCTCG
CGAGTTTGGCACTGCGCCGAAGAACCTCGCAGGAGGGGCACAAGACGTCG
CTGCGTCTCTGCGACGTCCCCCATGTTTTCGACGAGCGTGTACAGGACTC
CTTAGAGTTTGATCTCGTGGTGTCCGTCTTACCGGCTACCCGTGTGTGCC
TTGAATTGACCTATCCCTTAACTGTCGGCTGCAGGCTTGACTCAGAAGTG
GTGTCCATGGACAGCGACGGGCGCTGTACCGTGGTGGCGTGCCGGGACGG
GTCTTTGCGGCTGCTCGGCTCCCTCGAAGACGGGGGCTTCACGCAGGCAA
GCTTGTGGTTTTGGTGTAGTATGGTGTGAGTGTGTGATGGCACACGAAAA
ATATTAATTTTTTACGTATGCGTCCGTGTTGGCTGATGAAGCGATTTGAT
GAGAAGGTGGTGGGCCACGGCTGCTACGCCTGGCTCTAATTTCGACCGCG
GGCATCTAGCTGATGCGAGCCTCCGCTGGCTGTTGATCACCCCAATCGTT
GGCTTTCTCTCAGAGGCGAGAGGAAGAGGGGACGAATCAGAACATGGCGT
TAGCTGTGTGTGAGATTACTTGTTGATCATGTGAAGGCTGTTGTAGGAGC
CGCCCCGTGCGTCTTGCCTGCGTTTGCAACGAACACACCGAAGCGCCTTC
GGCACCTCTGTTTTTAACATGGTCTGCAGAAGCCGTGTTTTTCGCGAGGA
GCACGACGCGATTAGCCTTGCGCTGAGGCTCGCGACTGCATGTTTAGCCG
TCGTTGTTTCATTGGACGGCAGCGAGCGGCAGTCTCCGAACGTATTATTC
CACCGGTGCTTCTCTCGAGACTACATCCGGCAGGGTAGCTCGACGACGAC
ACTTGAAACCCCCGCCACCACCCGAACCCATTGGCTAGCTCTTCCTTGTC
TCTATACGGGTCAAAACTGCTGCTCTTTTCTCCTTTTGGGTAATAGTCAC
GCGCAGGCGATTCGACGCTCTCCTTTTTTGTCCCAGACTGCCGCACGGAG
AGCCGCAAACAAAGGATTTTTCAACGTGCTTTTTTCTCTTCGCGCGTCTC
GCTTCTAATTTCGAGCATCGCGTCACTCTCCCCTTCTTTAATGCAGACTG
TAGTGAGAGAGTCTGGCCACGCTGGAGATATCACCTGCCTCCATGTGTGC
GCCTGGGATGGCGGCGGTAGCGCTAACAATGGCGCCGGCAACGCTGCTGT
TGTCGTGACCGGTTCGGACGGCGGGGCCGTGAGGGTTTGGGACGTGATGC
ATAGATATCGGGTGTAACTGGCTTTCCTTTCGACAGCGACCGTTTAATAT
CGTAGAGTGTGTATTGTAGTTAGCAATGACCGCGTTAACCGACTGACCAA
TGAAAATACGTCAGTCTGAGAGCTGGACGAGCCAAGTATGCAAGCGTCCT
AGTCAGCGGGACTCCCCCGTTTTTAGTTTTTTCTCCGGTTTTGCCTTAAA
TTCTGGACTTGGGCGGGCAGTCAAGGGTGTTGAAGGCTTCACAGACTCTA
CACTTGTAGGTGGCCGTTTCAAGCTGCTGTTCACAACCATGCCGCCGTTT
AATCCGTCGGTTCACAAGAGCTTGGCCGGGCGTCCTGGGCGTAAGGACGT
GATCATTTGTAGAAGACAAGAAAAACTGGCATGTTTACGGTTGATGTTCG
ACCTACGCAGGGAACCAAAACAATAGAAGGACAACACGAACGCAGGAGTA
AAAGCTTGAGGGTTAATTCCTGTTTTGTTGTATGGGTTCCAAAAGGGTAT
TGGGGCATATGGGGCGGTTTCTACGCTTTGTTTTATACTGTGGAAGGCGG
TGTCATTGGCAATATCTGGGTTCTCACTATGATACAGTGTTTTCCTGCTG
CAGGTTGCAGTCTAGCCCGAACAGAGATAGGTTTACCACGTATACTAGTG
TTGTAGGGGGGAAGGGAGACTTGCAAATATTACGAGTGATGCGAGGTTGT
TAGTGGCGTTTATTTGTCCGCTCTTTTTTTTCTGGTGCACGGCCGTCAGT
TTTTGAAGGTGGCCTTCAATTGACAGCGCGGACAGTTGAGCTACAGGTCA
CCGTCCCCGAAGCACCATCGTCGCCCCCGTTTTTTTGTTGTGTCGAGGCT
GAAAGTGTTAATAGAATAGGGCTTGGGTCGTCCGAATGAGCTGACTTCCA
CAAGTGTATCGGAGTCTGGTCGCTTCACGTGAACGTTTTTTGACGCCGAG
GTGCCAACAAATGCAAGAAAGGCGGTTCCATTGCCTAAGATAGCTTGAAC
CATGTGCGCAACTGCCGGCGGCATGTAGGTATTGCTGCTACGACCCTGTG
GCGATGCTTTCCGAGAGTTGACGGGTTGAGCGCTACGGGGGTTGCCATGA
CTTTCCCGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig98:125..3584+

>mRNA_Ecto-sp9_F_contig98.17885.1 ID=mRNA_Ecto-sp9_F_contig98.17885.1|Name=mRNA_Ecto-sp9_F_contig98.17885.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1212bp|location=Sequence derived from alignment at Ecto-sp9_F_contig98:125..3584+ (Ectocarpus species9 EcSCA_722f female)
ATGGACCCCGTCCCCGTGCTCGAGCTCTTCGACCTGGAAACCCCCGCACA
GGCGCTATGCATCGACGGGGCCGGGAAAGCTCTCGCCGCCGGCGGGGAGG
ACGGGATGGTTGCGGTCTGGGACATCGCCACCGGCGCCCTATCAGCCACA
TGGACCCCGTCCCCGTGCTCGAGCTCTTCGACCTGGAAACCCCCGCACAG
GCGCTATGCATCGACGGGGCCGGGAAAGCTCTCGCCGCCGGCGGGGAGGA
CGGGATGGTTGCGGTCTGGGACATCGCCACCGGCGCCCTATCAGCCACGT
TTAGCGGCTGTGCCGACCAGAGCCCCATCGTGTCAATACGATGGGCGGAA
ACCGGGGACGGTGCACATTCAATCCCCGGCGGTGGCAATACGATGGCGTG
TTTGGTGTTGGCATCAGCTGTCGGCGAGATCTGGCGCGTGTCTCCGGTCG
GTGTGCCCCTGGGGTCCCTAAGGTTTAGCGGCTGTGCCGACCAGAGCCCC
ATCGTGTCAATACGATGGGCGGAAACCGGGGACGGTGCACATTCAATCCC
CGGCGGTGGCAATACGATGGCGTGTTTGGTGTTGGCATCAGCTGTCGGCG
AGATCTGGCGCGTGTCTCCGGTCGGTGTGCCCCTGGGGTCCCTAAGGCTT
GACTCAGAAGTGGTGTCCATGGACAGCGACGGGCGCTGTACCGTGGTGGC
GTGCCGGGACGGGTCTTTGCGGCTGCTCGGCTCCCTCGAAGACGGGGGCT
TCACGCAGGCTTGACTCAGAAGTGGTGTCCATGGACAGCGACGGGCGCTG
TACCGTGGTGGCGTGCCGGGACGGGTCTTTGCGGCTGCTCGGCTCCCTCG
AAGACGGGGGCTTCACGCAGACTGTAGTGAGAGAGTCTGGCCACGCTGGA
GATATCACCTGCCTCCATGTGTGCGCCTGGGATGGCGGCGGTAGCGCTAA
CAATGGCGCCGGCAACGCTGCTGTTGTCGTGACCGGTTCGGACGGCGGGG
CCGTGAGGGTTTGGGACGTGATGCATAGATATCGGGTGTAAACTGTAGTG
AGAGAGTCTGGCCACGCTGGAGATATCACCTGCCTCCATGTGTGCGCCTG
GGATGGCGGCGGTAGCGCTAACAATGGCGCCGGCAACGCTGCTGTTGTCG
TGACCGGTTCGGACGGCGGGGCCGTGAGGGTTTGGGACGTGATGCATAGA
TATCGGGTGTAA
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