prot_Ecto-sp9_F_contig945.17601.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig945.17601.1
Unique Nameprot_Ecto-sp9_F_contig945.17601.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length285
Homology
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BLAST of mRNA_Ecto-sp9_F_contig945.17601.1 vs.
Match: Ubiquitinyl (hydrolase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDJ5_ECTSI)

HSP 1 Score: 425 bits (1092), Expect = 4.030e-146
Identity = 264/284 (92.96%), Postives = 267/284 (94.01%), Query Frame = 0 
Query:    1 MLDNPTRITTFALEAYLHQLREDGYSVFVLRGDDLPPPATEPREGSRDCWYRVKDLLEVSRGGKGSGGALNTAATDVWLNSGPGQRLDGGTTSKGSGKDGRDSGGAGMMSAEDMQLAMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGLYTPHPVPELQPNGPDVVRVQLRVGSSQRVVHSFRRSDPVTALFDVAAQALAKADGKALSSPFDVVAPGGRALLKAGVVVRGTDGGDAATAAKPAGAGVEEGDDGGPTIGSEQLGGASVIVRRA 284
            MLDNPTRITTFALEAYLHQLREDGYSVFV+RGDDLPPPATEPREGSRDCWYRVKDLLEVSRGGKGSGGALNTAATDVWLNSGPGQRLDGGTTSKG GKDGRDSGGAGM SAEDMQLAMA  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   +GLYTP PVPELQPNGPDVVRVQLRVG  QRVVHSFRRSDP+TALFDVAAQALAKADGKAL SPFDVVAPGGRALLKAGVVV GTDGGD ATAAKPAGAG  E D GGPTIGSEQLGGASVIVRRA
Sbjct:  129 MLDNPTRITTFALEAYLHQLREDGYSVFVVRGDDLPPPATEPREGSRDCWYRVKDLLEVSRGGKGSGGALNTAATDVWLNSGPGQRLDGGTTSKGPGKDGRDSGGAGMTSAEDMQLAMAISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSPAGLYTPQPVPELQPNGPDVVRVQLRVGGGQRVVHSFRRSDPLTALFDVAAQALAKADGKALPSPFDVVAPGGRALLKAGVVVPGTDGGDVATAAKPAGAGGGESDGGGPTIGSEQLGGASVIVRRA 412
[Close]
BLAST of mRNA_Ecto-sp9_F_contig945.17601.1 vs.
Match: Ubiquitinyl (hydrolase 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ83_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.040e-7
Identity = 31/54 (57.41%), Postives = 37/54 (68.52%), Query Frame = 0 
Query:    2 LDNPTRITTFALEAYLHQLREDGYSVFVLRGDDLPPPATEPREGS----RDCWY 51
            L+ P  IT++ALEA LHQ R DGYSVFV+RG  LPPP+TE   GS     + WY
Sbjct:  140 LERPEWITSYALEATLHQYRLDGYSVFVVRGGTLPPPSTEGPYGSDAGNAEDWY 193
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig945.17601.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Ubiquitinyl4.030e-14692.96hydrolase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
Ubiquitinyl1.040e-757.41hydrolase 1 n=1 Tax=Tribonema minus TaxID=303371 R... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 282..284
NoneNo IPR availableGENE3D3.90.70.40coord: 1..45
e-value: 3.2E-5
score: 25.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig945contigEcto-sp9_F_contig945:23009..27441 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig945.17601.1mRNA_Ecto-sp9_F_contig945.17601.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig945 22136..28038 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig945.17601.1 ID=prot_Ecto-sp9_F_contig945.17601.1|Name=mRNA_Ecto-sp9_F_contig945.17601.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=285bp
MLDNPTRITTFALEAYLHQLREDGYSVFVLRGDDLPPPATEPREGSRDCW
YRVKDLLEVSRGGKGSGGALNTAATDVWLNSGPGQRLDGGTTSKGSGKDG
RDSGGAGMMSAEDMQLAMAISASMGGGGEGAEGGGEGEDEMARAIALSLS
QEKSASSSSGLYTPHPVPELQPNGPDVVRVQLRVGSSQRVVHSFRRSDPV
TALFDVAAQALAKADGKALSSPFDVVAPGGRALLKAGVVVRGTDGGDAAT
AAKPAGAGVEEGDDGGPTIGSEQLGGASVIVRRA*
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