mRNA_Ecto-sp9_F_contig945.17601.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig945.17601.1
Unique NamemRNA_Ecto-sp9_F_contig945.17601.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig945.17601.1 vs.
Match: Ubiquitinyl (hydrolase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDJ5_ECTSI)

HSP 1 Score: 545 bits (1404), Expect = 7.410e-188
Identity = 324/344 (94.19%), Postives = 327/344 (95.06%), Query Frame = 1 
Query:    1 QVLNTALKRLYGAYLVSAGSESVGKLSTTGYDVEDAFVLNRHAHWVAVRSIGGAYWDLNSMLDNPTRITTFALEAYLHQLREDGYSVFVLRGDDLPPPATEPREGSRDCWYRVKDLLEVSRGGKGSGGALNTAATDVWLNSGPGQRLDGGTTSKGSGKDGRDSGGAGMMSAEDMQLAMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGLYTPHPVPELQPNGPDVVRVQLRVGSSQRVVHSFRRSDPVTALFDVAAQALAKADGKALSSPFDVVAPGGRALLKAGVVVRGTDGGDAATAAKPAGAGVEEGDDGGPTIGSEQLGGASVIVRRA 1032
            QVLNTALKRLYGAYLVSAGSESVGKLSTTGYDVEDAFVLNRHAHWVAVRSIGGAYWDLNSMLDNPTRITTFALEAYLHQLREDGYSVFV+RGDDLPPPATEPREGSRDCWYRVKDLLEVSRGGKGSGGALNTAATDVWLNSGPGQRLDGGTTSKG GKDGRDSGGAGM SAEDMQLAMA  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   +GLYTP PVPELQPNGPDVVRVQLRVG  QRVVHSFRRSDP+TALFDVAAQALAKADGKAL SPFDVVAPGGRALLKAGVVV GTDGGD ATAAKPAGAG  E D GGPTIGSEQLGGASVIVRRA
Sbjct:   69 QVLNTALKRLYGAYLVSAGSESVGKLSTTGYDVEDAFVLNRHAHWVAVRSIGGAYWDLNSMLDNPTRITTFALEAYLHQLREDGYSVFVVRGDDLPPPATEPREGSRDCWYRVKDLLEVSRGGKGSGGALNTAATDVWLNSGPGQRLDGGTTSKGPGKDGRDSGGAGMTSAEDMQLAMAISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSPAGLYTPQPVPELQPNGPDVVRVQLRVGGGQRVVHSFRRSDPLTALFDVAAQALAKADGKALPSPFDVVAPGGRALLKAGVVVPGTDGGDVATAAKPAGAGGGESDGGGPTIGSEQLGGASVIVRRA 412
[Close]
BLAST of mRNA_Ecto-sp9_F_contig945.17601.1 vs.
Match: Ubiquitinyl (hydrolase 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ83_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.460e-33
Identity = 73/116 (62.93%), Postives = 82/116 (70.69%), Query Frame = 1 
Query:    1 QVLNTALKRLYGAYLVSAGSESV-GKLSTTGYDVEDAFVLNRHAHWVAVRSIGGAYWDLNSMLDNPTRITTFALEAYLHQLREDGYSVFVLRGDDLPPPATEPREGS----RDCWY 333
            QVL+ AL   YG  L SAGSE V GKLSTTGYD E  FV NR AHW AVRS+GG YW+LNS L+ P  IT++ALEA LHQ R DGYSVFV+RG  LPPP+TE   GS     + WY
Sbjct:   78 QVLSEALTLRYGLRLESAGSERVAGKLSTTGYDSEAGFVCNRQAHWFAVRSVGGRYWNLNSTLERPEWITSYALEATLHQYRLDGYSVFVVRGGTLPPPSTEGPYGSDAGNAEDWY 193
[Close]
BLAST of mRNA_Ecto-sp9_F_contig945.17601.1 vs.
Match: Ubiquitinyl (hydrolase 1 n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SLM5_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 4.480e-18
Identity = 61/155 (39.35%), Postives = 84/155 (54.19%), Query Frame = 1 
Query:    1 QVLNTALKRLYGAYLVSAGSESVGKLSTTGYDV--EDAFVLNRHAHWVAVRSIGGAYWDLNSMLDNPTRITTFALEAYLHQLREDGYSVFVLR-GDDLPPP---ATEPREGSRDCWYRVKDLLEVSRGGKGSGGALNTAAT--DVWLNSGPGQRL 441
            QVL  AL+R +   L     + VG  S  G D+   DAF+ N+  HW  VR + G YW+LNSML+ P +++ F L A+L QL+ DGY VF++  G +LP P     E   G+  C++ V  L   SR G  +G +   A    D W  +G GQRL
Sbjct:   90 QVLKRALERSHELVL-----DHVGATSLEGQDLLSHDAFICNKSNHWFTVRKLYGLYWNLNSMLERPEKVSDFYLSAFLMQLQADGYDVFIVSPGANLPDPPHGGPEAGMGAASCFHTVSSL---SRSGSTAGSSTAAAGEQKDPWAMAGEGQRL 236
[Close]
BLAST of mRNA_Ecto-sp9_F_contig945.17601.1 vs.
Match: Ubiquitinyl (hydrolase 1 n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SUA2_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 8.170e-16
Identity = 47/119 (39.50%), Postives = 68/119 (57.14%), Query Frame = 1 
Query:    1 QVLNTALKRLYGAYLVSAGSESVGKLSTTGYDVEDAFVLNRHAHWVAVRSIGGAYWDLNSMLDNPTRITTFALEAYLHQLREDGYSVFVLRGDDLPPPATEPREGSRDC-WYRVKDLLE 354
            QVL  ALK L+   L+S  SE  G+L      +E+ F++N   HW  +R I   +W+LNS +  P +I+ F L A+L QL  +G SVFV RG  +PP  T     S +C WY + +L++
Sbjct:   79 QVLKEALKSLHNIDLISWTSEE-GRLDIIDPTIEEGFIINHSQHWYTIRKINDIWWNLNSTIQVPEKISPFYLSAFLSQLINEGSSVFVARGK-IPPQKTSRGITSDNCKWYHIDELIK 195
[Close]
BLAST of mRNA_Ecto-sp9_F_contig945.17601.1 vs.
Match: Ubiquitinyl (hydrolase 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GVD8_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 7.080e-15
Identity = 53/117 (45.30%), Postives = 69/117 (58.97%), Query Frame = 1 
Query:    1 QVLNTALKRLYGAYLVS---AGSESVGKLSTTGYDVED--AFVLNRHAHWVAVRSIGGAYWDLNSMLDNPTRITTFALEAYLHQLREDGYSVFVLRGDDLPPPATEPRE-GSRDCWY 333
            QVL+TAL R +G  LV    A +E +  L+    D+ +  AFV N   HW ++RSI G  WDLNS+   P  I+ F L AYL QLRE+GYS+FV+ G  LPP  T+    G R  W+
Sbjct:   74 QVLSTALDRSHGLKLVQDRRAVNELLEYLNGDNADLSEDVAFVCNLANHWFSIRSIRGELWDLNSLKKRPACISLFYLSAYLGQLREEGYSIFVVEGT-LPPLFTDMNAMGKRSDWF 189
[Close]
BLAST of mRNA_Ecto-sp9_F_contig945.17601.1 vs.
Match: Ubiquitinyl (hydrolase 1 (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZE0_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 3.680e-14
Identity = 57/154 (37.01%), Postives = 75/154 (48.70%), Query Frame = 1 
Query:    1 QVLNTALKRLYGAYLVSAGSESVGKLSTTGYDVEDAFVLNRHAHWVAVRSIGGAYWDLNSMLDNPTRITTFALEAYLHQLREDGYSVFVLRG----DDLPPPATEPREGSRDCWYRVKDLLEVSRGGKGSGGALNTAATDVWLNSGPGQRLDGG 450
            QVL  AL+R +   LV    +S G  S      +  FV+NR  HW  +R I   +W+LNS  + P  ++ F L A LHQLR+DGYSVF+ +G    +    P      G    WY   +LL  +     SG A   AA   +  SG G RL GG
Sbjct:   90 QVLRLALERYHNIDLVPWHFKSEGADSDPL--AQQGFVVNRSEHWFTIRKINNTWWNLNSTSELPEVVSQFYLSALLHQLRQDGYSVFIAKGKLNTNTTGKPFNSEVSGDNGHWYTEDELLNKTS--TASGVAAKPAAPPAF--SGVGNRLGGG 237
[Close]
BLAST of mRNA_Ecto-sp9_F_contig945.17601.1 vs.
Match: Ubiquitinyl (hydrolase 1 (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P0Z6_9EUKA)

HSP 1 Score: 76.3 bits (186), Expect = 1.850e-11
Identity = 38/98 (38.78%), Postives = 56/98 (57.14%), Query Frame = 1 
Query:    1 QVLNTALKRLYGAYLVSAGSESVGKLSTTGYDVEDAFVLNRHAHWVAVRSIGGAYWDLNSMLDNPTRITTFALEAYLHQLREDGYSVFVLRGDDLPPP 294
            QVL+ AL+R +   L    ++ +  + +   + +  FVLNRH+HW  VR + G +W LNS   NP  ++ F L A L  L  D +S+FV+RG  LP P
Sbjct:   89 QVLSEALRRAHSLTLEDTRNKELRDVISRP-EAQQGFVLNRHSHWYCVRKVHGRWWKLNSTEANPEALSEFGLSALLSNLVADQWSIFVVRGGQLPAP 185
[Close]
BLAST of mRNA_Ecto-sp9_F_contig945.17601.1 vs.
Match: Ubiquitinyl (hydrolase 1 n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q609_9CHLO)

HSP 1 Score: 73.2 bits (178), Expect = 5.340e-10
Identity = 37/106 (34.91%), Postives = 55/106 (51.89%), Query Frame = 1 
Query:   73 KLSTTGYDV--EDAFVLNRHAHWVAVRSIGGAYWDLNSMLDNPTRITTFALEAYLHQLREDGYSVFVLRGDDLP--PPATEPREGSRDCWYRVKDLLEVSRGGKGS 378
            +L   G+D   E AF+ N   HW A+R + G +W+ NS+   P  ++ F L AYL  L+E GY++FV+RG  LP  P AT         W+   +     +  +GS
Sbjct:   89 ELREAGFDAQREQAFICNLQEHWFAIRQVDGEWWNFNSLYPAPEHLSAFYLTAYLDSLKEQGYTIFVVRGQ-LPASPAATGAELDGPGQWWNPDEARAAHKDAQGS 193
[Close]
BLAST of mRNA_Ecto-sp9_F_contig945.17601.1 vs.
Match: Ubiquitinyl (hydrolase 1 n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S2F0_OSTLU)

HSP 1 Score: 71.2 bits (173), Expect = 1.730e-9
Identity = 38/90 (42.22%), Postives = 53/90 (58.89%), Query Frame = 1 
Query:  100 EDAFVLNRHAHWVAVRSIGGAYWDLNSMLDNPTRITTFALEAYLHQLREDGYSVFVLRGDDLPPPATEP---REGSRDCWYRVKDLLEVS 360
            E AFV N   HW A+R +G A+WDLNSM   P +I TF L+A+L+QL  +GYS+FV+R  DL   A      + G    W   ++ L ++
Sbjct:  103 ELAFVCNLSEHWFALRRLGDAWWDLNSMHAAPKKIGTFYLDAFLNQLTAEGYSIFVVR--DLAAAALPEMLGQNGEYGEWLTEEECLRLT 190
[Close]
BLAST of mRNA_Ecto-sp9_F_contig945.17601.1 vs.
Match: Ubiquitinyl (hydrolase 1 n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090M439_OSTTA)

HSP 1 Score: 70.9 bits (172), Expect = 2.610e-9
Identity = 43/123 (34.96%), Postives = 67/123 (54.47%), Query Frame = 1 
Query:    1 QVLNTALKRLYGAYLVSAGSESVGKLSTTGYDVEDAFVLNRHAHWVAVRSIGGAYWDLNSMLDNPTRITTFALEAYLHQLREDGYSVFVLRGDDLPPPATEPREGSRDC---WYRVKDLLEVS 360
            QVL +AL  +YG  +    S    ++     D+E  F+ N   HW A+R +   +WDLNS+   P +I  F LEA+L QL+ +G+SVFV+R D    P T+ + GS      W+  ++ + +S
Sbjct:   73 QVLESALS-IYGLVMRPITSPKEREMRP---DLERGFLCNLSEHWFALRRVDSTWWDLNSIKRAPRKIGEFYLEAFLDQLKGEGWSVFVVR-DLEGVPITDEQRGSTTTYGKWFTEEEAIALS 190
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig945.17601.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Ubiquitinyl7.410e-18894.19hydrolase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
Ubiquitinyl1.460e-3362.93hydrolase 1 n=1 Tax=Tribonema minus TaxID=303371 R... [more]
Ubiquitinyl4.480e-1839.35hydrolase 1 n=2 Tax=Rhizochromulina marina TaxID=1... [more]
Ubiquitinyl8.170e-1639.50hydrolase 1 n=1 Tax=Chromulina nebulosa TaxID=9678... [more]
Ubiquitinyl7.080e-1545.30hydrolase 1 n=1 Tax=Hondaea fermentalgiana TaxID=2... [more]
Ubiquitinyl3.680e-1437.01hydrolase 1 (Fragment) n=1 Tax=Spumella elongata T... [more]
Ubiquitinyl1.850e-1138.78hydrolase 1 (Fragment) n=1 Tax=Calcidiscus leptopo... [more]
Ubiquitinyl5.340e-1034.91hydrolase 1 n=1 Tax=Scenedesmus sp. NREL 46B-D3 Ta... [more]
Ubiquitinyl1.730e-942.22hydrolase 1 n=1 Tax=Ostreococcus lucimarinus (stra... [more]
Ubiquitinyl2.610e-934.96hydrolase 1 n=1 Tax=Ostreococcus tauri TaxID=70448... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig945contigEcto-sp9_F_contig945:22136..28038 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score428.7
Seed ortholog evalue2.1e-117
Seed eggNOG ortholog2880.D8LDJ5
Preferred nameATXN3
KEGG koko:K11863
KEGG Pathwayko04141,map04141
GOsGO:0000226,GO:0001012,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005759,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006325,GO:0006464,GO:0006476,GO:0006508,GO:0006511,GO:0006515,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007267,GO:0007268,GO:0007275,GO:0007399,GO:0007610,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010604,GO:0010810,GO:0016020,GO:0016043,GO:0016234,GO:0016569,GO:0016570,GO:0016575,GO:0016579,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0019899,GO:0019941,GO:0023052,GO:0030029,GO:0030036,GO:0030155,GO:0030162,GO:0030163,GO:0031090,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031625,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0033036,GO:0033554,GO:0034605,GO:0034641,GO:0034976,GO:0035520,GO:0035601,GO:0035640,GO:0035966,GO:0035967,GO:0036211,GO:0036459,GO:0036503,GO:0042176,GO:0042221,GO:0042405,GO:0042802,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0044212,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045103,GO:0045104,GO:0045732,GO:0045862,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051117,GO:0051171,GO:0051173,GO:0051179,GO:0051246,GO:0051247,GO:0051276,GO:0051603,GO:0051716,GO:0051788,GO:0060255,GO:0061136,GO:0061578,GO:0065007,GO:0070011,GO:0070013,GO:0070536,GO:0070646,GO:0070647,GO:0070887,GO:0070932,GO:0071108,GO:0071218,GO:0071310,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097159,GO:0098732,GO:0098916,GO:0099536,GO:0099537,GO:0101005,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1904292,GO:1904294,GO:1904327,GO:1904379,GO:1905897,GO:1905898,GO:1990380
EggNOG free text desc.protein localization to cytosolic proteasome complex
EggNOG OGsKOG2935@1,KOG2935@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquitin-related domain
Ec32 orthologEc-15_000320.1
Exons6
Model size1908
Cds size855
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig945.17601.1prot_Ecto-sp9_F_contig945.17601.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig945 23009..27441 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931028.0493412-UTR-Ecto-sp9_F_contig945:22135..230081622931028.0493412-UTR-Ecto-sp9_F_contig945:22135..23008Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig945 22136..23008 -
1692278999.3701255-UTR-Ecto-sp9_F_contig945:22135..230081692278999.3701255-UTR-Ecto-sp9_F_contig945:22135..23008Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig945 22136..23008 -
1622931028.1595669-UTR-Ecto-sp9_F_contig945:27441..275321622931028.1595669-UTR-Ecto-sp9_F_contig945:27441..27532Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig945 27442..27532 -
1692278999.4617286-UTR-Ecto-sp9_F_contig945:27441..275321692278999.4617286-UTR-Ecto-sp9_F_contig945:27441..27532Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig945 27442..27532 -
1622931028.1782284-UTR-Ecto-sp9_F_contig945:27949..280381622931028.1782284-UTR-Ecto-sp9_F_contig945:27949..28038Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig945 27950..28038 -
1692278999.4729867-UTR-Ecto-sp9_F_contig945:27949..280381692278999.4729867-UTR-Ecto-sp9_F_contig945:27949..28038Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig945 27950..28038 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931028.082168-CDS-Ecto-sp9_F_contig945:23008..233201622931028.082168-CDS-Ecto-sp9_F_contig945:23008..23320Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig945 23009..23320 -
1692278999.3885021-CDS-Ecto-sp9_F_contig945:23008..233201692278999.3885021-CDS-Ecto-sp9_F_contig945:23008..23320Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig945 23009..23320 -
1622931028.0974252-CDS-Ecto-sp9_F_contig945:23980..240451622931028.0974252-CDS-Ecto-sp9_F_contig945:23980..24045Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig945 23981..24045 -
1692278999.4036252-CDS-Ecto-sp9_F_contig945:23980..240451692278999.4036252-CDS-Ecto-sp9_F_contig945:23980..24045Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig945 23981..24045 -
1622931028.10965-CDS-Ecto-sp9_F_contig945:24912..252031622931028.10965-CDS-Ecto-sp9_F_contig945:24912..25203Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig945 24913..25203 -
1692278999.4201753-CDS-Ecto-sp9_F_contig945:24912..252031692278999.4201753-CDS-Ecto-sp9_F_contig945:24912..25203Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig945 24913..25203 -
1622931028.1256351-CDS-Ecto-sp9_F_contig945:25856..260271622931028.1256351-CDS-Ecto-sp9_F_contig945:25856..26027Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig945 25857..26027 -
1692278999.4354837-CDS-Ecto-sp9_F_contig945:25856..260271692278999.4354837-CDS-Ecto-sp9_F_contig945:25856..26027Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig945 25857..26027 -
1622931028.13839-CDS-Ecto-sp9_F_contig945:27425..274411622931028.13839-CDS-Ecto-sp9_F_contig945:27425..27441Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig945 27426..27441 -
1692278999.4508646-CDS-Ecto-sp9_F_contig945:27425..274411692278999.4508646-CDS-Ecto-sp9_F_contig945:27425..27441Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig945 27426..27441 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig945.17601.1

>prot_Ecto-sp9_F_contig945.17601.1 ID=prot_Ecto-sp9_F_contig945.17601.1|Name=mRNA_Ecto-sp9_F_contig945.17601.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=285bp
MLDNPTRITTFALEAYLHQLREDGYSVFVLRGDDLPPPATEPREGSRDCW
YRVKDLLEVSRGGKGSGGALNTAATDVWLNSGPGQRLDGGTTSKGSGKDG
RDSGGAGMMSAEDMQLAMAISASMGGGGEGAEGGGEGEDEMARAIALSLS
QEKSASSSSGLYTPHPVPELQPNGPDVVRVQLRVGSSQRVVHSFRRSDPV
TALFDVAAQALAKADGKALSSPFDVVAPGGRALLKAGVVVRGTDGGDAAT
AAKPAGAGVEEGDDGGPTIGSEQLGGASVIVRRA*
back to top

mRNA from alignment at Ecto-sp9_F_contig945:22136..28038-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig945.17601.1 ID=mRNA_Ecto-sp9_F_contig945.17601.1|Name=mRNA_Ecto-sp9_F_contig945.17601.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=5903bp|location=Sequence derived from alignment at Ecto-sp9_F_contig945:22136..28038- (Ectocarpus species9 EcSCA_722f female)
CAGGTCCTAAACACGGCCCTGAAGCGACTGTATGGGGCGTACCTTGTATC
GGCGGGCAGCGAGAGCGTAGGAAAGCTCAGCACCACGGGGTGAGAAGAGA
TAAGGCAAGAGCAGCGAAGCATCGAGCGTGGGATGGGAGGGGGAGGCGTG
GTGGTGAAGGGCGGGTTGGGGGGGGTGACGAGTCGGCTTTGAGGGAAAGT
GACAGCAATGATATGCTTTCCCTTGCCGCTTGGGTAGAAGTAGCCCCAGC
ACGGTATTTGGTGACTTTTCTTTGAGGGATTTCAACGGCGTGAAATCGCT
TAGTCTTGGAGCCGGCAATACTATTATGGTGTGTTGCGGTTCGTGTACAA
CCGATTCGGTGAGCTTGTTGGTGTTTTGGGCAAGACAGGGGTCGGCTCTC
TAGAGGCACCTACGGTATATATTCAAGTATTTTCCCTTGGTTTCTTCACG
GAGGTACTTCCGCATTGGTACTTTCGCTGTCTCCTCTTGCGTACGTATGT
GAGCAGATACGATGTCGAGGACGCCTTCGTTTTGAACCGACACGCACATT
GGGTGGCCGTGCGCTCTATCGGAGGGGCATATTGGGACCTCAACTCTATG
CTGGACAATCCAAGTAAGAGGAATGCTGGATAGTCTTATGTGAGAGGATT
GCTGGATAACCCAAGTACAGTCGAGGGACCTGTAAGTGCCGGTTGAATAG
TGCCAGGTGCCCGGTATACTGCCGGTAAAATCTCTGAACACAGGCGGAGC
TCTCAATAGTGCCAGAGCTTGCCCCGTATAGTGCCGGTTGGGCGCCGCCG
TAACCCCCGATAGTGTCCGTTCACCCGCGCGCGCATACACACACAAGACG
CAGGGCCAAATAATTGCTGTCAGCATGATGATGAGAATGATGGTAGCAGT
GAAAGCAAAAGGATGATGGTCAAAGCACTCCAAAACGAACTAGAGCGCAA
GGTAGCAGCCTTCGTAGACGTGTTCAGTTTTCTTCTGTTGCTACCGTTTC
TGTCTTTGATGCGGAGAATAGCTTAGCCTCCCCCATGCCGCCCCATCACG
GGGTCCCAGTTTAATGGCATTTAGAAGTGTTTTGTGCTGTCAACCGCACT
GAGAGTGACGTCTCTTCATTGGTCAGCCGGTTAGCGCGGTCGATGCTACT
TAAAACACACACACGCAGACACAACCAGGCAGAAGACAGACTTCACAGAG
AAATAGGGTACACGTGCTGCTGCAGACCCGAAACGCTTTGTACGAACGGG
GGCTTTTCAAGCAGTTTTTTCCGTCACCGGGTAATCGGGTGCATGACGCG
TGTCTTCCTTTCGCCGTCGACTAGTGCTAGTGAGGTACTGTAGCCCGAAA
TGCAACTATTTTTTTTTTCAACAAACTCTTGTGGGTTCGACACATTCGAC
AGAGGGTGGAGAAAGTCTGCCCACGCCCACGCTAGAACTTCACTAAATAA
TGTCGATCCATTTCGTATTCTGTTGGCCCCACAAGCGTGAGCGCCACACC
ATAAAGTCAAACACGTCCTCAATAGTGCCAGACCGGCACTATTGAGGGAT
TGAGCTGCCCTCAGCCGTGTTGGCACTATTCGCAATAGTGCCGGGTGCCC
GCTTTAGTGCCGGTGAACGTTATGTGCACGTACCGGCACTATACAGGTCC
CTCGACTGAATGAGGAACGCTGGATATCCAAGTGAGAGGAACGAAGGCCA
ACCACTCCCCCCTCATTGATGGACGTCTCCGGCTATATAACATCTCATCT
GCGGAATGCTCGACTGCTGTTTCGACCGAGACTTTACGTGCACCGCCGTC
TCAACGGACGTGTTGTAGTCGCTTTGGAACGCTCGGGCACGGAGAGACTT
GAAGGGGCACCCACCCTCTCAGAGCGAGTTGTTGGCGTGGGTGTTTTGGC
TTTTCCATATACGTAGCAACAATAGAAATGATGCGGGGCTTGTATTGGCG
CACACACGACCCCCCCCCCTCGACGGTTACGCCTTCTCTCGTCTCGTGAA
AACCCTTGCAGCGCGAATCACGACCTTCGCTCTTGAAGCTTACCTGCACC
AGCTGCGAGAAGACGGGTACTCGGTCTTCGTTCTAAGGGGGGACGACCTG
CCGCCTCCAGCCACGGAGCCCCGCGAGGGATCGAGGGACTGCTGGTACCG
CGTAAAGGACTTGCTCGAGGTGTCAAGAGGAGGTATGAGACGGTGTTAGA
AGAGATGCAGGGGGGGGGGTGATGTGTGATATATTAGGCGTTCCCTGCAA
TTGTGTAACATTCTGCCGTGTCATGATGCATCTCGAGGAGTCTGTTGGTT
GTTGTTTCTCGAACATTCCCGCAATCAACGGCGAGTGAAGTCACGCCGTC
GCACTGAAAGTCAGTTTTTGTTGTTGTTTCATGCCTTGTTGTTATTGCTC
CCGCTGTCATTGAAAAGACTGCAACCACATTTGTCCCTTGCGCCTTGTTT
TCCGCATTGTTGTTGTTGTTGTTGTCTTCACATTAAAAACCGTTCCGTTC
TCTCTGCCCGTACCTTCTTCTGTCCGTACTAGTCCGCATTGCTTACGCGA
TAATAGAGGGGTAGACAGCGCACCGAAACAAACCTCCCCATCTGTTTTGC
GGAATCGTATCCTTACGCGTCATCAGAAAACACTACCAACCACCCGCGCT
TTCTCTTGGTTGATGAATGGTATGTTTTTGCTGTTGTTAGTCTCTTTTAA
TGTCGTTGGATGTTGTTGTTGTTTTATGTCTTCACCGTAAGAACCACTTC
GATCTCTGCTCGAAACCTTTCAACCTCCGAACTGAAGCACAGGGAACTTG
ATTTTTTCTTTCTCTCTTTCTGCAAAATGGTACAGGAAAAGGATCTGGCG
GCGCATTGAACACGGCGGCTACAGACGTGTGGCTCAACTCCGGTCCCGGG
CAGCGCCTAGACGGGGGAACAACCTCCAAGGGTTCGGGAAAAGACGGGCG
GGATAGCGGCGGGGCGGGCATGATGTCCGCCGAAGACATGCAGCTCGCGA
TGGCGATCAGCGCTAGCATGGGCGGCGGCGGGGAGGGTGCTGAGGGGGGG
GGGGAGGGGGAGGATGAGATGGCTCGTGCCATCGCATTGTCGTTGTCGCA
AGAAAAGTCAGCATCGTCATCGTCAGGTGAAAGGAGGGTCGTGGCGGTGT
GGTAGATATTTTTTCATGTCGTTTCATTTTCTTGTGGGTCTCTTGTCGCA
GGCTGTTTGATCAAGGTGGAAGTTTTCCTTTTTATCTGGGGGTGGCACCG
CCACATGTTTTTCGCATGTGTGATCAAACCCTTGGGTATCGTCCCTACAC
ATAGTAGCTGAGAGCTCCTGTGTCGCCTACCGTGCACATTTTCTTAGCGA
AGAGTTCTTCTCTTCTGTCTGCTTTTTCATCCACATCGAACGCAGAGCAC
AATTGTTCCCTGTATTGGCTATTGTATCCACCTGCACTATTTTCACTGTG
CTTATACCTATTTTTTTGTACGGAAAGTTGAAAACTCCTGTCTGAATTCT
GCACATCTACGGTTTTTATCTCCTGTCGTAATTTTCATATTGAAAGAGAT
GCCATTACTTTTGGTGTTCTGGTCATCGACGTGCCGGCGGTGTGTCGCTT
GGAGGTACTTGGCATTATTTTTTTTTCAAGATCCATGATGAGTTTTTTTG
GGAATAGTTCGTGCATGTTCGAGTCGAAGACGCACATGCCGGACAACATC
TGAAACGAAGATCGAGTTCTTCTCCCACCTTCGCTCCGAAGGCTGATACT
GCCCTAGCTGATTGCGTCACACGTTCTGCCGTATCAGCCGAGACCATGCA
TCTGAAAAGGACACCGCTTGCCTTCCTACAACCAAAAGTGTGTGTCCATG
CGTGTACGTGCTTTAGGGAAGAACAGTAAATAGGGGTACGGTAGGGTTTC
CCTGTTCTCTGGTGTCGCTCAGACGAGAGGGATTACGTCGTGTTGAGTCC
TGCGACTGCTTTCTGCTTTCGTTGCCGTCGCTGCTGTCACCAGGCTTGTA
CACGCCACACCCGGTACCGGAGCTCCAACCGAATGGCCCGGACGTAGTGC
GAGTTCAGGTAAGCGGCTAAGAATGTGTGTTCCCTGCAAGACTCGTACGT
TTCTCATTGGAATTGCAGGTGTAATACCGCCTCTTGAGGAATTGGCGGCC
AAGAAATCGAGGTTCGAGGTTTTAAAATATTGAAGAAAATGTGCACGCAA
GCAGTTGTGATGTTTTGGTTCAAAGCCCCCTCGATACAACCATTTAATAT
GCTCCTACTAGCTCACAAACGGCGAAAGAAACCGAGGCTCTGGGCAATGA
GAATATGTCCAAGTTTGGCCCTATGAATATTATTCCGATTACATGGCGGA
AGCTAGCTGCGGTGTGCGTGTCACCGGTGAAGGGTGTCTTGTACGAGGTA
CCTATTTTTGATAGGGGTTTGGGGGGGGCATCTGGCATTCTTGGTTAAGT
CTTCGTGCTGCCATGCAACGGTTTATCCGGTTATTGACGACACAAGAAAA
AACAACTTTACATGTCGGTGTCACGCCGCCGCTGCGCGTTTTACCACTCT
GTCTAAAAGATGTTAGTGTACGTTGAGCATGCGTTCCTCGCATACACGAA
TACCGGTGCTGCAGGTGACATGAAGCACGCGTACACAATGCATAGCATGA
CCCCACTCCGTAATACCACCGTTGTCTCGTCTGCCCCCTCACCGCCGTGA
AAAAAAACAATGTTAAAGCTCCGAGTCGGGAGCAGCCAGAGAGTCGTCCA
TAGCTTCAGACGGTCCGATCCCGTCACGGCGCTTTTTGACGTGGCGGCTC
AAGCCCTCGCCAAAGCCGACGGTAAGGCGCTGTCTTCTCCCTTCGACGTG
GTAGCGCCAGGAGGACGGGCGCTGCTCAAGGCCGGGGTAGTTGTACGGGG
GACCGATGGGGGTGATGCAGCAACAGCAGCAAAGCCGGCGGGGGCGGGTG
TTGAGGAGGGTGATGACGGTGGCCCCACGATAGGGTCGGAACAGCTGGGC
GGGGCGAGCGTGATCGTGCGCAGGGCTTAGTTTTTTGGGTGTGTGTTTTT
GTTTGGCGTGACTGTCACTAGGCAGTTCCGTCCATGTCTTTGCGGTGTCT
CTGTGACACCGTCATCGCCGCATGTTTGTTGACAGTCCGGGCATCACGGG
GGTCGCATCACGTGGGCGGATGGCGCAAGACGGGTAAATTAGGTAGGATC
CATAACGTGTGCAAGATGTTGCGGCATTGCTGCGGCTGGTCTTTAGGAAC
ACCGGTATGGGAATGCTCGCGAATCATGGCGGACCATAGTTCCAGTTCCA
GTTGAAGGCTTGCCCAGTAGTGATTTTGTTACCGAGGGTATACCAAGTAC
AAACGCGCCTCCACTGAAAAAGAACTTAATTTACGCATCCCTCGCTCCTT
ATCTGATGGGTGGGGAAAACAATTGGGATTATTCATAGGTTTTAGTGCGG
GTAGGGCTGAAATTATTGTCGCTCGAGAAAAATAGAACCATGATTTCTTT
TTTCTCACCTATAACACCAAACACATCGGTGGTGAGGCGTTCTGTAGCAA
TAGACTTTGGCATGGCCGTTCTCTCTGCGACAGTGGTGTTCCCATGTACA
AATTCAAATTGTTGATGTTGCGGGGTGGCTTTCTGGGCGTGATAGGTGTC
CTCGCCTGCCTTGCTGCATGGTATCGGAGATTTTTTTAGTGTTATAGTAT
TTAGTATACCACGTTTGGGGCGGCGCCTGGTGGGTCTCACATGTTCCAGC
CGTAGTGACCTAAGATAGTCAGGTTGTACTGCTTGTTGTTTTCCGCAGAT
GGTGGAATGCATCGCTGCTTGCCTCGTGCAAACCGCGTTGTTATAAATCG
AACGCAAGCCGTGTGAGCGCTTAATTTCAAGTCACGGGAAAAAAAAAGTG
GAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig945:22136..28038-

>mRNA_Ecto-sp9_F_contig945.17601.1 ID=mRNA_Ecto-sp9_F_contig945.17601.1|Name=mRNA_Ecto-sp9_F_contig945.17601.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1710bp|location=Sequence derived from alignment at Ecto-sp9_F_contig945:22136..28038- (Ectocarpus species9 EcSCA_722f female)
ATGCTGGACAATCCAAATGCTGGACAATCCAACGCGAATCACGACCTTCG
CTCTTGAAGCTTACCTGCACCAGCTGCGAGAAGACGGGTACTCGGTCTTC
GTTCTAAGGGGGGACGACCTGCCGCCTCCAGCCACGGAGCCCCGCGAGGG
ATCGAGGGACTGCTGGTACCGCGTAAAGGACTTGCTCGAGGTGTCAAGAG
GAGCGCGAATCACGACCTTCGCTCTTGAAGCTTACCTGCACCAGCTGCGA
GAAGACGGGTACTCGGTCTTCGTTCTAAGGGGGGACGACCTGCCGCCTCC
AGCCACGGAGCCCCGCGAGGGATCGAGGGACTGCTGGTACCGCGTAAAGG
ACTTGCTCGAGGTGTCAAGAGGAGGAAAAGGATCTGGCGGCGCATTGAAC
ACGGCGGCTACAGACGTGTGGCTCAACTCCGGTCCCGGGCAGCGCCTAGA
CGGGGGAACAACCTCCAAGGGTTCGGGAAAAGACGGGCGGGATAGCGGCG
GGGCGGGCATGATGTCCGCCGAAGACATGCAGCTCGCGATGGCGATCAGC
GCTAGCATGGGCGGCGGCGGGGAGGGTGCTGAGGGGGGGGGGGAGGGGGA
GGATGAGATGGCTCGTGCCATCGCATTGTCGTTGTCGCAAGAAAAGTCAG
CATCGTCATCGTCAGGAAAAGGATCTGGCGGCGCATTGAACACGGCGGCT
ACAGACGTGTGGCTCAACTCCGGTCCCGGGCAGCGCCTAGACGGGGGAAC
AACCTCCAAGGGTTCGGGAAAAGACGGGCGGGATAGCGGCGGGGCGGGCA
TGATGTCCGCCGAAGACATGCAGCTCGCGATGGCGATCAGCGCTAGCATG
GGCGGCGGCGGGGAGGGTGCTGAGGGGGGGGGGGAGGGGGAGGATGAGAT
GGCTCGTGCCATCGCATTGTCGTTGTCGCAAGAAAAGTCAGCATCGTCAT
CGTCAGGCTTGTACACGCCACACCCGGTACCGGAGCTCCAACCGAATGGC
CCGGACGTAGTGCGAGTTCAGGCTTGTACACGCCACACCCGGTACCGGAG
CTCCAACCGAATGGCCCGGACGTAGTGCGAGTTCAGCTCCGAGTCGGGAG
CAGCCAGAGAGTCGTCCATAGCTTCAGACGGTCCGATCCCGTCACGGCGC
TTTTTGACGTGGCGGCTCAAGCCCTCGCCAAAGCCGACGGTAAGGCGCTG
TCTTCTCCCTTCGACGTGGTAGCGCCAGGAGGACGGGCGCTGCTCAAGGC
CGGGGTAGTTGTACGGGGGACCGATGGGGGTGATGCAGCAACAGCAGCAA
AGCCGGCGGGGGCGGGTGTTGAGGAGGGTGATGACGGTGGCCCCACGATA
GGGTCGGAACAGCTGGGCGGGGCGAGCGTGATCGTGCGCAGGGCTTAGCT
CCGAGTCGGGAGCAGCCAGAGAGTCGTCCATAGCTTCAGACGGTCCGATC
CCGTCACGGCGCTTTTTGACGTGGCGGCTCAAGCCCTCGCCAAAGCCGAC
GGTAAGGCGCTGTCTTCTCCCTTCGACGTGGTAGCGCCAGGAGGACGGGC
GCTGCTCAAGGCCGGGGTAGTTGTACGGGGGACCGATGGGGGTGATGCAG
CAACAGCAGCAAAGCCGGCGGGGGCGGGTGTTGAGGAGGGTGATGACGGT
GGCCCCACGATAGGGTCGGAACAGCTGGGCGGGGCGAGCGTGATCGTGCG
CAGGGCTTAG
back to top