prot_Ecto-sp9_F_contig88.16980.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig88.16980.1
Unique Name	prot_Ecto-sp9_F_contig88.16980.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	1043

Homology

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BLAST of mRNA_Ecto-sp9_F_contig88.16980.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLH6_ECTSI)

HSP 1 Score: 1109 bits (2869), Expect = 0.000e+0
Identity = 705/992 (71.07%), Postives = 718/992 (72.38%), Query Frame = 0

Query:   57 MSRLSYSETRDGIVPGVSEEGVETKGPSTSGGKRKRARDDDIDGVAEADANDGSGGASSPGADSLSSYSLMGVADGNDGKDAAGGVCKVEAEAAVADGAPSSSADGXXXXXXXXPXXXXXXXXVVEIPPPSAAPAVMEVSEEADCDSGGFNSGPPGTAAAPISIESGEAPQKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGSGEQRPSKKTRKSAGAKAKDSDGGSEGGSXXXXXXXXXDTDESKGNGKDXXXXXXXXXDGLEGPVLFTVGQPMSKKMRKMAKGRLSKWALKFTGTRTYAPPVVPVIEPINDDYLASFGRSYAEAKSLTAQDKTENTATQDDXXXXXXGGDDGD------SQAGDENGXXXXXXXXXXXXXNGTAEKDAADREAAKTEGSGSPTKKNSLSGGRKKHGVFLVNLLYTLCDEEKLESLFSTFGRVTAVVLTRPPEGKKVSGSASVYFDTSEEAQKALAADGMDIRGRCVGIREVRLSVDKRYFVEPEQAAKATNKAKPLEETRCTLCGAIGHDDKNCPFNACSRCWEEGHLVDACPYVDVMEEGPEPYXXXXXXXXXXXXXXXTACKGKSQLKFSCITCRDDGHTQCGKETILVFGNERGDAMTCCNCGLERHDWRSCPHQTEAEILRECGYRFNSVAGGXXXXXXXXXXXKTYMMCYNCGKQGHGKSECPVPRQTQTPGRFGTSNNYNRNDQPRVPAADWKQEWSASNNNPLSSNSLSQNRGSGKFRNDPMGSGQQHQHQAQQPTHLPSAYLNDLAQPPSPLQSTRRDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERGGTHNRYQHQMATPTDSRSSFPRWGDNAAVSNGGSGSGTFQRAYHPGGNFGSDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRGQRGGYHSYSRDQHQPAXXXXXXXXHHGSGSHQRSSYSSGQPYSSGGQSYSAGRRGGGTRDSHANPRSYGY 1042
            MSRLSYSETRDGIV GVSEEGVETKGPS SGGKRKRARDDDIDGVAEA+AN GSGGA+SPGADSLSSYSLMGVADGNDGKDAAGGV KVE EAA ADGAPSSSADG        P   XXXXX VEIPPPSAAPAVME+SEEADCDSGGFNSGPPGTAAAPISIESGEAPQKK                               VGSGEQRPSKK RKSAGA             XXXXXXXXX           XXXXXXX  DGLEGPVLF VGQPMSKKMRKMAKGRLSKWALKFTGTRTYAPP VPVIEPINDDYLASFGRSYAEAKSLTAQDK ENTATQDD         DGD      SQAGDENG  X      XX  N TAEKDAA REAAKTEGSGSPTKKNSL GGRKKHGVF+VNLLYTLCDEEKLESLFS FGRVTAVVLTRPPEG+KVSG ASVYFDT+EEAQKALAADGMDIRGRCVGIREVRLSVDKRYFVEPEQAAKATNKAKPLEETRCTLCGAIGHDD            EEGHL DACPYVDVMEEGPEPY               TACKGKSQLKFSCITCRDDGHTQCGKETILVFGNERG AMTCCNCGLERHDWRSCPHQTEAEILRECGYRFNS A  XXXXXXXXXXXKTYM+CYNCGKQGHGKSECPVPRQTQTPGRFGT +N                                               G  HQHQ                                                             ERGGTHNRY+HQMA+PTDSRSSFPRWGDN AVSNGGS SGT  RAYHPGGNFGSDSXXXXXXXXX             XXXXXXXXXXXXXXXSSRGQ+GGYHSYSRDQHQPAXXXXXX  HH SGSHQ S YSSGQPYSSGGQSYSAGRRGGGTRD+HA+PRSYGY
Sbjct:    1 MSRLSYSETRDGIVLGVSEEGVETKGPSNSGGKRKRARDDDIDGVAEAEANGGSGGAASPGADSLSSYSLMGVADGNDGKDAAGGVSKVEVEAAAADGAPSSSADGNAGSGADAPAADXXXXXXVEIPPPSAAPAVMELSEEADCDSGGFNSGPPGTAAAPISIESGEAPQKKSKGRISKKKQKAVAKELEAQQEDGDDGSGS-VGSGEQRPSKKARKSAGAXXXXXXXX-----XXXXXXXXXXXXXXXXXXXXXXXXXXXEGDGLEGPVLFAVGQPMSKKMRKMAKGRLSKWALKFTGTRTYAPPAVPVIEPINDDYLASFGRSYAEAKSLTAQDKKENTATQDD---------DGDXXXXXXSQAGDENGGGXDKEGPSXXEKNSTAEKDAAGREAAKTEGSGSPTKKNSLRGGRKKHGVFVVNLLYTLCDEEKLESLFSAFGRVTAVVLTRPPEGQKVSGIASVYFDTAEEAQKALAADGMDIRGRCVGIREVRLSVDKRYFVEPEQAAKATNKAKPLEETRCTLCGAIGHDD------------EEGHLADACPYVDVMEEGPEPYCSVCGKAGHSIDACETACKGKSQLKFSCITCRDDGHTQCGKETILVFGNERGHAMTCCNCGLERHDWRSCPHQTEAEILRECGYRFNSSAXXXXXXXXXXXXXKTYMVCYNCGKQGHGKSECPVPRQTQTPGRFGTHHN----------------------------------------------GGGYHQHQQ------------------------------------------------------------ERGGTHNRYEHQMASPTDSRSSFPRWGDNGAVSNGGSSSGTLHRAYHPGGNFGSDSXXXXXXXXXEDRHRSSGHRGERXXXXXXXXXXXXXXXSSRGQKGGYHSYSRDQHQPAXXXXXXYSHHSSGSHQCSRYSSGQPYSSGGQSYSAGRRGGGTRDAHASPRSYGY 859

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig88.16980.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig88.16980.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
Uncharacterized	0.000e+0	71.07	protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLH6...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 594..610 e-value: 0.45 score: 13.3 coord: 729..745 e-value: 0.0081 score: 24.1 coord: 677..693 e-value: 11.0 score: 4.8 coord: 576..592 e-value: 0.9 score: 11.5 coord: 621..637 e-value: 1.4 score: 10.3
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 730..744 score: 10.427
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 473..545 e-value: 7.5E-7 score: 38.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 479..542 e-value: 3.1E-10 score: 39.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 471..549 score: 12.663
None	No IPR available	GENE3D	4.10.60.10		coord: 674..762 e-value: 2.3E-5 score: 26.4
None	No IPR available	GENE3D	4.10.60.10		coord: 572..611 e-value: 3.3E-6 score: 28.9
None	No IPR available	PANTHER	PTHR46978:SF1	ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN	coord: 464..904
None	No IPR available	PANTHER	PTHR46978	FAMILY NOT NAMED	coord: 464..904
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 388..554 e-value: 1.3E-14 score: 56.4
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 710..749
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 567..610
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 458..549

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig88	contig	Ecto-sp9_F_contig88:19259..27037 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig88.16980.1	mRNA_Ecto-sp9_F_contig88.16980.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig88 19259..29155 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig88.16980.1 ID=prot_Ecto-sp9_F_contig88.16980.1|Name=mRNA_Ecto-sp9_F_contig88.16980.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=1043bp
MPLRGYAESTTLNVYHTPNSDLRWSPMPHAQATRLESREGTPRGALLPPV
LSTIQAMSRLSYSETRDGIVPGVSEEGVETKGPSTSGGKRKRARDDDIDG
VAEADANDGSGGASSPGADSLSSYSLMGVADGNDGKDAAGGVCKVEAEAA
VADGAPSSSADGNAGAGADAPAADDDDDEVVEIPPPSAAPAVMEVSEEAD
CDSGGFNSGPPGTAAAPISIESGEAPQKKKSKGRKSKKKQKASAKDLEAQ
QEDGGDGSGSVGSGEQRPSKKTRKSAGAKAKDSDGGSEGGSDDDDASGGA
DTDESKGNGKDGDGGDSGGGDGLEGPVLFTVGQPMSKKMRKMAKGRLSKW
ALKFTGTRTYAPPVVPVIEPINDDYLASFGRSYAEAKSLTAQDKTENTAT
QDDDDGDGDGGDDGDSQAGDENGGGGDKEGPSDDEKNGTAEKDAADREAA
KTEGSGSPTKKNSLSGGRKKHGVFLVNLLYTLCDEEKLESLFSTFGRVTA
VVLTRPPEGKKVSGSASVYFDTSEEAQKALAADGMDIRGRCVGIREVRLS
VDKRYFVEPEQAAKATNKAKPLEETRCTLCGAIGHDDKNCPFNACSRCWE
EGHLVDACPYVDVMEEGPEPYCSVCGKAGHSIDACETACKGKSQLKFSCI
TCRDDGHTQCGKETILVFGNERGDAMTCCNCGLERHDWRSCPHQTEAEIL
RECGYRFNSVAGGGNRRKSTGGGGKTYMMCYNCGKQGHGKSECPVPRQTQ
TPGRFGTSNNYNRNDQPRVPAADWKQEWSASNNNPLSSNSLSQNRGSGKF
RNDPMGSGQQHQHQAQQPTHLPSAYLNDLAQPPSPLQSTRRDGGAAAFSG
PPSPPYHHRNHDSHHNGGGYHQHQQERGGTHNRYQHQMATPTDSRSSFPR
WGDNAAVSNGGSGSGTFQRAYHPGGNFGSDSSGGGGGRRVEDRHRSSGHR
EERYSSSRGGGDRYSGGGSSRGQRGGYHSYSRDQHQPAPTPSPSYSHHGS
GSHQRSSYSSGQPYSSGGQSYSAGRRGGGTRDSHANPRSYGY*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001878	Znf_CCHC
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR036875	Znf_CCHC_sf
IPR035979	RBD_domain_sf