prot_Ecto-sp9_F_contig8778.16956.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig8778.16956.1
Unique Nameprot_Ecto-sp9_F_contig8778.16956.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length75
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig8778.16956.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI8_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 4.020e-8
Identity = 34/50 (68.00%), Postives = 36/50 (72.00%), Query Frame = 0 
Query:   27 PPTALREPLQKVSSSGPALARQPARRR-SRRPWAAGSWCLPAACCLLGLL 75
            PPT L+EPLQ    +G     QPARRR SRR W AGSW LPAACCLLGLL
Sbjct:   27 PPTTLQEPLQVSRMAG-----QPARRRGSRRAWEAGSWRLPAACCLLGLL 71
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8778.16956.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized4.020e-868.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..16
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..75
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8778contigEcto-sp9_F_contig8778:2911..5434 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8778.16956.1mRNA_Ecto-sp9_F_contig8778.16956.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig8778 2671..5434 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig8778.16956.1 ID=prot_Ecto-sp9_F_contig8778.16956.1|Name=mRNA_Ecto-sp9_F_contig8778.16956.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=75bp
MMNSSAPAGCCSPLLLQQRRQQAEVLPPTALREPLQKVSSSGPALARQPA
RRRSRRPWAAGSWCLPAACCLLGLL
back to top