mRNA_Ecto-sp9_F_contig8778.16956.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8778.16956.1
Unique NamemRNA_Ecto-sp9_F_contig8778.16956.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig8778.16956.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHI8_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 4.120e-7
Identity = 34/50 (68.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:  319 PPTALREPLQKVSSSGPALARQPARRR-SRRPWAAGSWCLPAACCLLGLL 465
            PPT L+EPLQ    +G     QPARRR SRR W AGSW LPAACCLLGLL
Sbjct:   27 PPTTLQEPLQVSRMAG-----QPARRRGSRRAWEAGSWRLPAACCLLGLL 71
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8778.16956.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized4.120e-768.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8778contigEcto-sp9_F_contig8778:2671..5434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size467
Cds size225
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8778.16956.1prot_Ecto-sp9_F_contig8778.16956.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8778 2911..5434 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930926.95266-UTR-Ecto-sp9_F_contig8778:2670..29101622930926.95266-UTR-Ecto-sp9_F_contig8778:2670..2910Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8778 2671..2910 +
1692278952.1836538-UTR-Ecto-sp9_F_contig8778:2670..29101692278952.1836538-UTR-Ecto-sp9_F_contig8778:2670..2910Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig8778 2671..2910 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930926.9782665-CDS-Ecto-sp9_F_contig8778:2910..30881622930926.9782665-CDS-Ecto-sp9_F_contig8778:2910..3088Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8778 2911..3088 +
1692278952.1970294-CDS-Ecto-sp9_F_contig8778:2910..30881692278952.1970294-CDS-Ecto-sp9_F_contig8778:2910..3088Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8778 2911..3088 +
1622930927.0001943-CDS-Ecto-sp9_F_contig8778:5387..54341622930927.0001943-CDS-Ecto-sp9_F_contig8778:5387..5434Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8778 5388..5434 +
1692278952.211791-CDS-Ecto-sp9_F_contig8778:5387..54341692278952.211791-CDS-Ecto-sp9_F_contig8778:5387..5434Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8778 5388..5434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8778.16956.1

>prot_Ecto-sp9_F_contig8778.16956.1 ID=prot_Ecto-sp9_F_contig8778.16956.1|Name=mRNA_Ecto-sp9_F_contig8778.16956.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=75bp
MMNSSAPAGCCSPLLLQQRRQQAEVLPPTALREPLQKVSSSGPALARQPA
RRRSRRPWAAGSWCLPAACCLLGLL
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mRNA from alignment at Ecto-sp9_F_contig8778:2671..5434+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8778.16956.1 ID=mRNA_Ecto-sp9_F_contig8778.16956.1|Name=mRNA_Ecto-sp9_F_contig8778.16956.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2764bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8778:2671..5434+ (Ectocarpus species9 EcSCA_722f female)
GCCACGCCACACCAAACCTCGTCTGTCTCAACATCCAGTTAGCGTGGCAA
TTCCTCGCCGCTTTCGACAAGAGCAACGAAGTGCTGGGTCTCCGTCGAGT
GGTTGGCAACAGCACCTCATCGGAGGGGGATTGCTCTGTCGGGAGTCCAC
GCACAACCGCCGCTCCCTGCCCCTCTCTTGTATACGTTGCTGGTTGAGGA
AACGACGCGTGAGGGTGGCTTCACACACTGACTCGCGATCATGATGAATA
GCTCTGCGCCTGCTGGCTGCTGCTCTCCCCTGCTACTCCAACAGCGACGA
CAGCAAGCAGAAGTATTACCACCAACTGCTCTGCGAGAACCGCTTCAAAA
AGTCAGCAGCAGTGGCCCGGCGTTGGCGAGGCAGCCTGCGCGCCGCCGAT
CAAGGCGGCCGTGGGCAGGTGAGAAGAGAAGCAAATAGAATGCTGTTCGG
TGACCTCAAAGAACGTCTGTGACCTCAAGTCCAGCGTGCTGGGACTGCAG
GGCTGCACAACGAGGGTTCTATGGATGATGTCTATAATAACTCGGGGTCG
GGGCGGGAACGCATGGCGCCCAATTCGGGTTAAGACCCACCACGACTGTT
GTTATGTGTGTGTTTGTGCTTGCAGCCCTGCCTTTCGTTGCACGCACGTG
CACCCACGGCTGCTGGAGTGTACGATTTCCAAATGGGACCACCATATCCT
GCCTTAGACTGGGCTTGAAATCAACCTTTTTTGCTGTCATCCCCTATTTG
CATCGTGGCTTCCTAAATAGGTTCGGGCGAGGGCATGTGTGGAGCTGTGG
TTAGTGTCTCTGTGAAAGAATATGTACTCCTAGAGAGAGTCATACATAGA
CTATTTGCATTCGCTGAAACACGTCTTTTCATTGGTCAGTCGTACGCGAT
CGATGCTAATGATAAACACACACATACGGTGAGCACTATATGCATACGTA
CACGGAGCGCGACATACATCGACATCAACACCAAATGATGGCCGCGAGGT
TTGGTTTCAAGGATGCCAATCTTTCGCGAACTTGTTCACCATATATCAGC
GCGAGGAAAGATTCACGAAATTTCCGGCTAGAATTCCGCGAGACTGTCAC
CGCCACCCAGCTTGTTGTGTCGTTGCCGTGTGTGCGTTGTGCCATGTGTT
CCATGTGCGGGCTGCCTTACGGTGAATGAGTTGATGATGTGTTCAACGCC
TGTTGTATATTGTAGGAGTATGACATATGGTACGACCAACGGCAGAGACA
GTCGTCGCCGCATGCTGTCAAATCACACTGACAGTTTTGCTTGAAAACCG
CCCATGGGACACTCATGGGTCACCCATGGGCGGCCCATGAAGTGCCCATC
GTGGGCACTTCAACCTAGAACTTCGCCACCGGCATATCAACCTAGAACTT
AGCCACCTTCACATCAACCTACAGCAGTAGAACTTAGCCACCAGCGCTAA
CCTAGCACGTATCGTGTGGGCTTGGGGTTAGTGTTAGGGTTAGCGTTAGG
TTTATTAGCGGCTATAGCGCCCGTTCCAAAGCAGATAATATATTGTTTAG
GAATACACTGGTCCGGTTGAAGGGCTCTCATTGGCCGCCCATGGGCTTCC
CATGGGTTAACCATGGGCACCCATGGGCACCCATGGGAGTCCCATGAGTC
GTTTGGGAAAACTGTAGAAAGTGTGGGAGACCCCATGCTGTGAACGTGCG
CTCGTGGTTTGTGTGCAGGGCCCAGCTTGATGTGTGGTCACGGTGTGGCC
CCTAATACTGCTACGTGCACATGCGTACACTGTACGCCTTCCGCAGTTGC
GGGCTAACTACTATCCAGATGGGTGTACGCATAGTCTAAACGGACCAAGA
GAACACAAACCGCGATATATTACACTAATGACGTCAGATCCCCGTCAAAC
TTGGCAGCAGGAGACACGTCGGACAAGGAAGACCGACAAGGACATTGACA
CACTGAGCCGATTTCTCACACTCGACACGCGAGGCCAAGCAGCATTAACA
CAAACTAGCCAATAGAAGCAAAGGTCACCAATCAAGTGCATTTCACCGCC
GCCGACGGTTTGCACCGGCCATGCGATGTCCCCAAACGTATACCACCCAC
ATAGGGGCTCAAGTCAAGCCACACAGGGGGTACCTGTATGCTCCATTCGA
AAACGATACAATCGAGAGTGTATTACCCGCACCCTCGACTTGTTCTTTTT
CCCTGCGACCCCTTGTTTTAGAGATTGCCTATCATAGCAATACCGATGTG
GTGAAGGCGTAACTTGACCAGATTCACTCCGACGTGGGGGAGCAGAAGAA
GAGGAACTTGTTGCCCCACCCTTGCGCGAACTTGGAGGGGGGTTGTTCCT
GGGTGCGGGCGTGGGCAGGCCTTCTTGACGTTTCCTCCTCAGCGATCTCA
CCAGTTGACGATCTCAAGTAGAATAATGCACCTCGTGTGTGTATGTTGTG
TGACACTGAATTCTTCGTTGGAAAGTACCCTCCTCGTGGTTAAACCTCCT
GGAGAAATAGGATGAGAATAAATATCAACAGTGCTCTGCCTGCCCCCCCC
CCCCCCCCCCGGGCGGCGGCCCCCCCCACCTGGCGCCCCCCCCCCGGGCC
CCGCCTGCCCCCGCGCCGCGCGTGCGCGTCTCCCTCCAACGTGCGACCTC
TCTCTCGGCGCCTGCTTACCTCGGCGAATCGCAATAAACATGCAACCTCC
ATCAAAATCAAACTCAGCGGGAAGCTGGTGTCTCCCTGCTGCGTGTTGTC
TGTTGGGCCTCCTG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8778:2671..5434+

>mRNA_Ecto-sp9_F_contig8778.16956.1 ID=mRNA_Ecto-sp9_F_contig8778.16956.1|Name=mRNA_Ecto-sp9_F_contig8778.16956.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=450bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8778:2671..5434+ (Ectocarpus species9 EcSCA_722f female)
ATGATGAATAGCTCTGCGCCTGCTGGCTGCTGCTCTCCCCTGCTACTCCA
ACAGCGACGACAGCAAGCAGAAGTATTACCACCAACTGCTCTGCGAGAAC
CGCTTCAAAAAGTCAGCAGCAGTGGCCCGGCGTTGGCGAGGCAGCCTGCG
CGCCGCCGATCAAGGCGGCCGTGGGCAGATGATGAATAGCTCTGCGCCTG
CTGGCTGCTGCTCTCCCCTGCTACTCCAACAGCGACGACAGCAAGCAGAA
GTATTACCACCAACTGCTCTGCGAGAACCGCTTCAAAAAGTCAGCAGCAG
TGGCCCGGCGTTGGCGAGGCAGCCTGCGCGCCGCCGATCAAGGCGGCCGT
GGGCAGCGGGAAGCTGGTGTCTCCCTGCTGCGTGTTGTCTGTTGGGCCTC
CTGCGGGAAGCTGGTGTCTCCCTGCTGCGTGTTGTCTGTTGGGCCTCCTG
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