prot_Ecto-sp9_F_contig8776.16952.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig8776.16952.1
Unique Nameprot_Ecto-sp9_F_contig8776.16952.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length103
Homology
BLAST of mRNA_Ecto-sp9_F_contig8776.16952.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC10_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 7.250e-54
Identity = 86/92 (93.48%), Postives = 91/92 (98.91%), Query Frame = 0
Query:   11 SLLSQVIIDQVFWAPIFSLIFFTWIGVTSGASPSEIVAKVKSDLVQGVVGSWTVWPLAHTINFKFVPTEQRLLYINSIQIFYNVFLSIIGSK 102
            +++ +VIIDQVFWAPIF+LIFFTWIGVTSGASPSEIVAKVKSDLVQGVVGSWTVWPLAHTINFKFVPTEQRLLYINSIQIFYNVFLSIIGSK
Sbjct:  204 TVIQKVIIDQVFWAPIFTLIFFTWIGVTSGASPSEIVAKVKSDLVQGVVGSWTVWPLAHTINFKFVPTEQRLLYINSIQIFYNVFLSIIGSK 295          
BLAST of mRNA_Ecto-sp9_F_contig8776.16952.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE62_9STRA)

HSP 1 Score: 135 bits (340), Expect = 5.850e-37
Identity = 60/88 (68.18%), Postives = 72/88 (81.82%), Query Frame = 0
Query:   15 QVIIDQVFWAPIFSLIFFTWIGVTSGASPSEIVAKVKSDLVQGVVGSWTVWPLAHTINFKFVPTEQRLLYINSIQIFYNVFLSIIGSK 102
            +V  DQV WAPIF+ ++ TW+GVTSG SP E+  K+K+DLV+GVVGSW+VWPL H I FKFVP EQRLLYIN IQI YNVFLS++GS 
Sbjct:  197 KVFTDQVLWAPIFTFVYLTWMGVTSGLSPPEVGEKIKTDLVKGVVGSWSVWPLVHAIGFKFVPLEQRLLYINCIQIGYNVFLSVLGSN 284          
BLAST of mRNA_Ecto-sp9_F_contig8776.16952.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FYX3_9STRA)

HSP 1 Score: 132 bits (331), Expect = 4.250e-36
Identity = 59/89 (66.29%), Postives = 74/89 (83.15%), Query Frame = 0
Query:   14 SQVIIDQVFWAPIFSLIFFTWIGVTSGASPSEIVAKVKSDLVQGVVGSWTVWPLAHTINFKFVPTEQRLLYINSIQIFYNVFLSIIGSK 102
            S+V IDQV W PIF ++FF+++G T+G  P+ + AKVK DL+  V GSWTVWP+AH INF+F+PT QRLLYIN+IQIFYNVFLSIIG+K
Sbjct:  166 SKVGIDQVLWNPIFGVMFFSYMGFTNGDGPAAVAAKVKRDLMTQVTGSWTVWPIAHAINFRFIPTSQRLLYINTIQIFYNVFLSIIGNK 254          
BLAST of mRNA_Ecto-sp9_F_contig8776.16952.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4A9_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.920e-33
Identity = 56/89 (62.92%), Postives = 70/89 (78.65%), Query Frame = 0
Query:   14 SQVIIDQVFWAPIFSLIFFTWIGVTSGASPSEIVAKVKSDLVQGVVGSWTVWPLAHTINFKFVPTEQRLLYINSIQIFYNVFLSIIGSK 102
            ++V IDQ+FW PIF  +FFT++G+  G S  EIV K+KSDL   V+GSWTVW  AH INFKFVP+ QRLLYIN+IQI YN+FLS +G+K
Sbjct:   86 TKVAIDQLFWNPIFGTVFFTYLGLAEGKSGGEIVNKIKSDLKTAVMGSWTVWVPAHIINFKFVPSSQRLLYINTIQIGYNIFLSFLGNK 174          
BLAST of mRNA_Ecto-sp9_F_contig8776.16952.1 vs.
Match: Peroxisomal (membrane protein-related n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5E2_9STRA)

HSP 1 Score: 123 bits (308), Expect = 2.030e-33
Identity = 56/89 (62.92%), Postives = 70/89 (78.65%), Query Frame = 0
Query:   14 SQVIIDQVFWAPIFSLIFFTWIGVTSGASPSEIVAKVKSDLVQGVVGSWTVWPLAHTINFKFVPTEQRLLYINSIQIFYNVFLSIIGSK 102
            ++V IDQ  W PIF ++FF+++G+T G S  +I  K+K+DL   V+GSWTVW  AHTINFKFVPT QRLLYINSIQI YNVFLS +G+K
Sbjct:   86 TKVAIDQTIWNPIFGIMFFSYLGLTEGKSVDQIYQKIKADLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINSIQIGYNVFLSFLGNK 174          
BLAST of mRNA_Ecto-sp9_F_contig8776.16952.1 vs.
Match: Peroxisomal (membrane protein-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB2_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 1.290e-32
Identity = 55/89 (61.80%), Postives = 69/89 (77.53%), Query Frame = 0
Query:   14 SQVIIDQVFWAPIFSLIFFTWIGVTSGASPSEIVAKVKSDLVQGVVGSWTVWPLAHTINFKFVPTEQRLLYINSIQIFYNVFLSIIGSK 102
            S+V IDQ  W PIF ++FFT++G+  G S  +I  K+K+DL   V+GSWTVW  AHTINFKFVPT QRLLYIN+IQI YN+FLS +G+K
Sbjct:   86 SKVAIDQTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQIGYNIFLSFLGNK 174          
BLAST of mRNA_Ecto-sp9_F_contig8776.16952.1 vs.
Match: Mpv17/PMP22 (n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZ10_9STRA)

HSP 1 Score: 121 bits (304), Expect = 4.660e-32
Identity = 53/88 (60.23%), Postives = 68/88 (77.27%), Query Frame = 0
Query:   15 QVIIDQVFWAPIFSLIFFTWIGVTSGASPSEIVAKVKSDLVQGVVGSWTVWPLAHTINFKFVPTEQRLLYINSIQIFYNVFLSIIGSK 102
            +V+IDQV WAP+F++IFF WI V  GA   +I  K+  DLV+GV  SW VWPL H INF+F+P +QRLLYIN+IQI YNVFLS++ S+
Sbjct:  165 KVLIDQVLWAPVFTVIFFAWIEVLQGAGLQKIKQKINQDLVRGVTASWKVWPLVHVINFRFIPPQQRLLYINTIQIGYNVFLSMLASR 252          
BLAST of mRNA_Ecto-sp9_F_contig8776.16952.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RA66_9STRA)

HSP 1 Score: 119 bits (299), Expect = 5.200e-32
Identity = 53/89 (59.55%), Postives = 70/89 (78.65%), Query Frame = 0
Query:   14 SQVIIDQVFWAPIFSLIFFTWIGVTSGASPSEIVAKVKSDLVQGVVGSWTVWPLAHTINFKFVPTEQRLLYINSIQIFYNVFLSIIGSK 102
            S+V+IDQVFW P F ++FFT++G+  G S ++I+ K+K+DL   V+GSW VW  AHTINF F+P  QRLLYINSIQI YN+FLS +G+K
Sbjct:   95 SKVLIDQVFWNPCFGIMFFTYLGLAEGKSFADIMKKIKADLKTAVMGSWAVWVPAHTINFAFIPPSQRLLYINSIQIGYNIFLSFLGNK 183          
BLAST of mRNA_Ecto-sp9_F_contig8776.16952.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BQD5_9RHOD)

HSP 1 Score: 121 bits (303), Expect = 8.700e-32
Identity = 57/89 (64.04%), Postives = 69/89 (77.53%), Query Frame = 0
Query:   13 LSQVIIDQVFWAPIFSLIFFTWIGVTSGASPSEIVAKVKSDLVQGVVGSWTVWPLAHTINFKFVPTEQRLLYINSIQIFYNVFLSIIGS 101
            +S+V IDQ+ WAPIF + FF  +G   G S  EI AK+++DLV  V  SW VWPLAH INF+F+PTEQRLLYIN+IQI YNVFLSIIG+
Sbjct:  169 ISKVAIDQLLWAPIFGVAFFGILGAMEGKSVKEIKAKIENDLVTAVTTSWKVWPLAHAINFRFIPTEQRLLYINAIQIGYNVFLSIIGN 257          
BLAST of mRNA_Ecto-sp9_F_contig8776.16952.1 vs.
Match: Hypothetical (protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y4X3_9STRA)

HSP 1 Score: 118 bits (296), Expect = 3.840e-31
Identity = 53/92 (57.61%), Postives = 72/92 (78.26%), Query Frame = 0
Query:   11 SLLSQVIIDQVFWAPIFSLIFFTWIGVTSGASPSEIVAKVKSDLVQGVVGSWTVWPLAHTINFKFVPTEQRLLYINSIQIFYNVFLSIIGSK 102
            +++++V+IDQ+ W PIF L+FF ++  T G S  + +AK+K+DL   V+GSW VW  AHTINF+FVP  QRLLYIN+IQIFYNVFLS +G+K
Sbjct:  125 TVVTKVMIDQLLWNPIFGLMFFGYLNFTEGKSMDDYIAKLKADLQTAVMGSWAVWVPAHTINFRFVPPSQRLLYINTIQIFYNVFLSFLGNK 216          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8776.16952.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized7.250e-5493.48protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC10... [more]
Uncharacterized5.850e-3768.18protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical4.250e-3666.29protein n=1 Tax=Florenciella parvula TaxID=236787 ... [more]
Hypothetical1.920e-3362.92protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Peroxisomal2.030e-3362.92membrane protein-related n=1 Tax=Tribonema minus T... [more]
Peroxisomal1.290e-3261.80membrane protein-related n=1 Tax=Ectocarpus silicu... [more]
Mpv17/PMP224.660e-3260.23n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZ10_... [more]
Hypothetical5.200e-3259.55protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Hypothetical8.700e-3264.04protein n=1 Tax=Rhodosorus marinus TaxID=101924 Re... [more]
Hypothetical3.840e-3157.61protein n=1 Tax=Amphiprora paludosa TaxID=265537 R... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007248Mpv17/PMP22PFAMPF04117Mpv17_PMP22coord: 36..97
e-value: 6.8E-20
score: 71.1
IPR007248Mpv17/PMP22PANTHERPTHR11266PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17coord: 9..100
NoneNo IPR availablePANTHERPTHR11266:SF80PEROXISOMAL MEMBRANE PROTEIN 2coord: 9..100
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..35
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 101..102
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 82..100
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 36..81
NoneNo IPR availableTMHMMTMhelixcoord: 82..101
NoneNo IPR availableTMHMMTMhelixcoord: 21..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8776contigEcto-sp9_F_contig8776:1121..1429 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8776.16952.1mRNA_Ecto-sp9_F_contig8776.16952.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig8776 1121..1429 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig8776.16952.1 ID=prot_Ecto-sp9_F_contig8776.16952.1|Name=mRNA_Ecto-sp9_F_contig8776.16952.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=103bp
MFYKHRRSVFSLLSQVIIDQVFWAPIFSLIFFTWIGVTSGASPSEIVAKV
KSDLVQGVVGSWTVWPLAHTINFKFVPTEQRLLYINSIQIFYNVFLSIIG
SK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007248Mpv17_PMP22