mRNA_Ecto-sp9_F_contig8776.16952.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8776.16952.1
Unique NamemRNA_Ecto-sp9_F_contig8776.16952.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig8776.16952.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC10_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 7.250e-54
Identity = 86/92 (93.48%), Postives = 91/92 (98.91%), Query Frame = 1
Query:   31 SLLSQVIIDQVFWAPIFSLIFFTWIGVTSGASPSEIVAKVKSDLVQGVVGSWTVWPLAHTINFKFVPTEQRLLYINSIQIFYNVFLSIIGSK 306
            +++ +VIIDQVFWAPIF+LIFFTWIGVTSGASPSEIVAKVKSDLVQGVVGSWTVWPLAHTINFKFVPTEQRLLYINSIQIFYNVFLSIIGSK
Sbjct:  204 TVIQKVIIDQVFWAPIFTLIFFTWIGVTSGASPSEIVAKVKSDLVQGVVGSWTVWPLAHTINFKFVPTEQRLLYINSIQIFYNVFLSIIGSK 295          
BLAST of mRNA_Ecto-sp9_F_contig8776.16952.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE62_9STRA)

HSP 1 Score: 135 bits (340), Expect = 5.850e-37
Identity = 60/88 (68.18%), Postives = 72/88 (81.82%), Query Frame = 1
Query:   43 QVIIDQVFWAPIFSLIFFTWIGVTSGASPSEIVAKVKSDLVQGVVGSWTVWPLAHTINFKFVPTEQRLLYINSIQIFYNVFLSIIGSK 306
            +V  DQV WAPIF+ ++ TW+GVTSG SP E+  K+K+DLV+GVVGSW+VWPL H I FKFVP EQRLLYIN IQI YNVFLS++GS 
Sbjct:  197 KVFTDQVLWAPIFTFVYLTWMGVTSGLSPPEVGEKIKTDLVKGVVGSWSVWPLVHAIGFKFVPLEQRLLYINCIQIGYNVFLSVLGSN 284          
BLAST of mRNA_Ecto-sp9_F_contig8776.16952.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FYX3_9STRA)

HSP 1 Score: 132 bits (331), Expect = 4.250e-36
Identity = 59/89 (66.29%), Postives = 74/89 (83.15%), Query Frame = 1
Query:   40 SQVIIDQVFWAPIFSLIFFTWIGVTSGASPSEIVAKVKSDLVQGVVGSWTVWPLAHTINFKFVPTEQRLLYINSIQIFYNVFLSIIGSK 306
            S+V IDQV W PIF ++FF+++G T+G  P+ + AKVK DL+  V GSWTVWP+AH INF+F+PT QRLLYIN+IQIFYNVFLSIIG+K
Sbjct:  166 SKVGIDQVLWNPIFGVMFFSYMGFTNGDGPAAVAAKVKRDLMTQVTGSWTVWPIAHAINFRFIPTSQRLLYINTIQIFYNVFLSIIGNK 254          
BLAST of mRNA_Ecto-sp9_F_contig8776.16952.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4A9_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.920e-33
Identity = 56/89 (62.92%), Postives = 70/89 (78.65%), Query Frame = 1
Query:   40 SQVIIDQVFWAPIFSLIFFTWIGVTSGASPSEIVAKVKSDLVQGVVGSWTVWPLAHTINFKFVPTEQRLLYINSIQIFYNVFLSIIGSK 306
            ++V IDQ+FW PIF  +FFT++G+  G S  EIV K+KSDL   V+GSWTVW  AH INFKFVP+ QRLLYIN+IQI YN+FLS +G+K
Sbjct:   86 TKVAIDQLFWNPIFGTVFFTYLGLAEGKSGGEIVNKIKSDLKTAVMGSWTVWVPAHIINFKFVPSSQRLLYINTIQIGYNIFLSFLGNK 174          
BLAST of mRNA_Ecto-sp9_F_contig8776.16952.1 vs.
Match: Peroxisomal (membrane protein-related n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5E2_9STRA)

HSP 1 Score: 123 bits (308), Expect = 2.030e-33
Identity = 56/89 (62.92%), Postives = 70/89 (78.65%), Query Frame = 1
Query:   40 SQVIIDQVFWAPIFSLIFFTWIGVTSGASPSEIVAKVKSDLVQGVVGSWTVWPLAHTINFKFVPTEQRLLYINSIQIFYNVFLSIIGSK 306
            ++V IDQ  W PIF ++FF+++G+T G S  +I  K+K+DL   V+GSWTVW  AHTINFKFVPT QRLLYINSIQI YNVFLS +G+K
Sbjct:   86 TKVAIDQTIWNPIFGIMFFSYLGLTEGKSVDQIYQKIKADLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINSIQIGYNVFLSFLGNK 174          
BLAST of mRNA_Ecto-sp9_F_contig8776.16952.1 vs.
Match: Peroxisomal (membrane protein-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGB2_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 1.290e-32
Identity = 55/89 (61.80%), Postives = 69/89 (77.53%), Query Frame = 1
Query:   40 SQVIIDQVFWAPIFSLIFFTWIGVTSGASPSEIVAKVKSDLVQGVVGSWTVWPLAHTINFKFVPTEQRLLYINSIQIFYNVFLSIIGSK 306
            S+V IDQ  W PIF ++FFT++G+  G S  +I  K+K+DL   V+GSWTVW  AHTINFKFVPT QRLLYIN+IQI YN+FLS +G+K
Sbjct:   86 SKVAIDQTIWNPIFGVMFFTYLGLAEGKSVDDIQKKIKNDLATAVMGSWTVWIPAHTINFKFVPTSQRLLYINTIQIGYNIFLSFLGNK 174          
BLAST of mRNA_Ecto-sp9_F_contig8776.16952.1 vs.
Match: Mpv17/PMP22 (n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZ10_9STRA)

HSP 1 Score: 121 bits (304), Expect = 4.660e-32
Identity = 53/88 (60.23%), Postives = 68/88 (77.27%), Query Frame = 1
Query:   43 QVIIDQVFWAPIFSLIFFTWIGVTSGASPSEIVAKVKSDLVQGVVGSWTVWPLAHTINFKFVPTEQRLLYINSIQIFYNVFLSIIGSK 306
            +V+IDQV WAP+F++IFF WI V  GA   +I  K+  DLV+GV  SW VWPL H INF+F+P +QRLLYIN+IQI YNVFLS++ S+
Sbjct:  165 KVLIDQVLWAPVFTVIFFAWIEVLQGAGLQKIKQKINQDLVRGVTASWKVWPLVHVINFRFIPPQQRLLYINTIQIGYNVFLSMLASR 252          
BLAST of mRNA_Ecto-sp9_F_contig8776.16952.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RA66_9STRA)

HSP 1 Score: 119 bits (299), Expect = 5.200e-32
Identity = 53/89 (59.55%), Postives = 70/89 (78.65%), Query Frame = 1
Query:   40 SQVIIDQVFWAPIFSLIFFTWIGVTSGASPSEIVAKVKSDLVQGVVGSWTVWPLAHTINFKFVPTEQRLLYINSIQIFYNVFLSIIGSK 306
            S+V+IDQVFW P F ++FFT++G+  G S ++I+ K+K+DL   V+GSW VW  AHTINF F+P  QRLLYINSIQI YN+FLS +G+K
Sbjct:   95 SKVLIDQVFWNPCFGIMFFTYLGLAEGKSFADIMKKIKADLKTAVMGSWAVWVPAHTINFAFIPPSQRLLYINSIQIGYNIFLSFLGNK 183          
BLAST of mRNA_Ecto-sp9_F_contig8776.16952.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BQD5_9RHOD)

HSP 1 Score: 121 bits (303), Expect = 8.700e-32
Identity = 57/89 (64.04%), Postives = 69/89 (77.53%), Query Frame = 1
Query:   37 LSQVIIDQVFWAPIFSLIFFTWIGVTSGASPSEIVAKVKSDLVQGVVGSWTVWPLAHTINFKFVPTEQRLLYINSIQIFYNVFLSIIGS 303
            +S+V IDQ+ WAPIF + FF  +G   G S  EI AK+++DLV  V  SW VWPLAH INF+F+PTEQRLLYIN+IQI YNVFLSIIG+
Sbjct:  169 ISKVAIDQLLWAPIFGVAFFGILGAMEGKSVKEIKAKIENDLVTAVTTSWKVWPLAHAINFRFIPTEQRLLYINAIQIGYNVFLSIIGN 257          
BLAST of mRNA_Ecto-sp9_F_contig8776.16952.1 vs.
Match: Hypothetical (protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y4X3_9STRA)

HSP 1 Score: 118 bits (296), Expect = 3.840e-31
Identity = 53/92 (57.61%), Postives = 72/92 (78.26%), Query Frame = 1
Query:   31 SLLSQVIIDQVFWAPIFSLIFFTWIGVTSGASPSEIVAKVKSDLVQGVVGSWTVWPLAHTINFKFVPTEQRLLYINSIQIFYNVFLSIIGSK 306
            +++++V+IDQ+ W PIF L+FF ++  T G S  + +AK+K+DL   V+GSW VW  AHTINF+FVP  QRLLYIN+IQIFYNVFLS +G+K
Sbjct:  125 TVVTKVMIDQLLWNPIFGLMFFGYLNFTEGKSMDDYIAKLKADLQTAVMGSWAVWVPAHTINFRFVPPSQRLLYINTIQIFYNVFLSFLGNK 216          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8776.16952.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized7.250e-5493.48protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC10... [more]
Uncharacterized5.850e-3768.18protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Hypothetical4.250e-3666.29protein n=1 Tax=Florenciella parvula TaxID=236787 ... [more]
Hypothetical1.920e-3362.92protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Peroxisomal2.030e-3362.92membrane protein-related n=1 Tax=Tribonema minus T... [more]
Peroxisomal1.290e-3261.80membrane protein-related n=1 Tax=Ectocarpus silicu... [more]
Mpv17/PMP224.660e-3260.23n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZ10_... [more]
Hypothetical5.200e-3259.55protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Hypothetical8.700e-3264.04protein n=1 Tax=Rhodosorus marinus TaxID=101924 Re... [more]
Hypothetical3.840e-3157.61protein n=1 Tax=Amphiprora paludosa TaxID=265537 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8776contigEcto-sp9_F_contig8776:1121..1429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.5
Seed ortholog evalue8.1e-43
Seed eggNOG ortholog2880.D8LC10
KEGG koko:K13348
KEGG Pathwayko04146,map04146
EggNOG free text desc.Belongs to the peroxisomal membrane protein PXMP2 4 family
EggNOG OGsKOG1944@1,KOG1944@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categorysignal peptide
Exons1
Model size309
Cds size309
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930926.735724-CDS-Ecto-sp9_F_contig8776:1120..14291622930926.735724-CDS-Ecto-sp9_F_contig8776:1120..1429Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8776 1121..1429 +
1692278952.1011267-CDS-Ecto-sp9_F_contig8776:1120..14291692278952.1011267-CDS-Ecto-sp9_F_contig8776:1120..1429Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8776 1121..1429 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8776.16952.1prot_Ecto-sp9_F_contig8776.16952.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8776 1121..1429 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8776.16952.1

>prot_Ecto-sp9_F_contig8776.16952.1 ID=prot_Ecto-sp9_F_contig8776.16952.1|Name=mRNA_Ecto-sp9_F_contig8776.16952.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=103bp
MFYKHRRSVFSLLSQVIIDQVFWAPIFSLIFFTWIGVTSGASPSEIVAKV
KSDLVQGVVGSWTVWPLAHTINFKFVPTEQRLLYINSIQIFYNVFLSIIG
SK*
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mRNA from alignment at Ecto-sp9_F_contig8776:1121..1429+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8776.16952.1 ID=mRNA_Ecto-sp9_F_contig8776.16952.1|Name=mRNA_Ecto-sp9_F_contig8776.16952.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=309bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8776:1121..1429+ (Ectocarpus species9 EcSCA_722f female)
ATGTTTTACAAGCACCGACGTTCCGTGTTTTCCTTGCTCTCGCAGGTGAT CATCGACCAGGTCTTCTGGGCCCCTATCTTCTCCCTCATCTTCTTCACGT GGATCGGGGTGACGTCCGGCGCCTCCCCCAGCGAGATCGTGGCCAAGGTC AAGAGCGACTTGGTCCAGGGGGTGGTGGGGTCGTGGACGGTGTGGCCGCT AGCGCACACCATCAACTTCAAGTTCGTCCCCACCGAGCAGCGCCTGCTGT ACATCAACTCCATCCAGATCTTCTACAACGTGTTCCTGTCCATCATCGGA TCCAAGTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8776:1121..1429+

>mRNA_Ecto-sp9_F_contig8776.16952.1 ID=mRNA_Ecto-sp9_F_contig8776.16952.1|Name=mRNA_Ecto-sp9_F_contig8776.16952.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=618bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8776:1121..1429+ (Ectocarpus species9 EcSCA_722f female)
ATGTTTTACAAGCACCGACGTTCCGTGTTTTCCTTGCTCTCGCAGGTGAT
CATCGACCAGGTCTTCTGGGCCCCTATCTTCTCCCTCATCTTCTTCACGT
GGATCGGGGTGACGTCCGGCGCCTCCCCCAGCGAGATCGTGGCCAAGGTC
AAGAGCGACTTGGTCCAGGGGGTGGTGGGGTCGTGGACGGTGTGGCCGCT
AGCGCACACCATCAACTTCAAGTTCGTCCCCACCGAGCAGCGCCTGCTGT
ACATCAACTCCATCCAGATCTTCTACAACGTGTTCCTGTCCATCATCGGA
TCCAAGTAAATGTTTTACAAGCACCGACGTTCCGTGTTTTCCTTGCTCTC
GCAGGTGATCATCGACCAGGTCTTCTGGGCCCCTATCTTCTCCCTCATCT
TCTTCACGTGGATCGGGGTGACGTCCGGCGCCTCCCCCAGCGAGATCGTG
GCCAAGGTCAAGAGCGACTTGGTCCAGGGGGTGGTGGGGTCGTGGACGGT
GTGGCCGCTAGCGCACACCATCAACTTCAAGTTCGTCCCCACCGAGCAGC
GCCTGCTGTACATCAACTCCATCCAGATCTTCTACAACGTGTTCCTGTCC
ATCATCGGATCCAAGTAA
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